BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146705.10 - phase: 0
(146 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC225319 similar to UP|P93486 (P93486) Glycine-rich RNA-binding ... 210 2e-55
TC225318 similar to UP|P93486 (P93486) Glycine-rich RNA-binding ... 203 3e-53
TC215891 similar to GB|AAM78058.1|21928059|AY125548 AT5g61030/ma... 155 9e-39
TC217707 similar to UP|Q941H8 (Q941H8) RNA-binding protein precu... 148 1e-36
TC204083 similar to UP|O48567 (O48567) Glycine-rich RNA-binding ... 133 3e-32
TC204079 similar to UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding ... 129 5e-31
TC204084 UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein, co... 129 7e-31
TC204085 similar to UP|Q8VX74 (Q8VX74) Glycine-rich RNA-binding ... 119 5e-28
TC204105 similar to UP|Q8VX74 (Q8VX74) Glycine-rich RNA-binding ... 112 6e-26
CD393416 weakly similar to GP|15822703|gb| RNA-binding protein p... 99 9e-22
TC204097 homologue to UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-bindin... 96 5e-21
TC230531 weakly similar to UP|Q941H9 (Q941H9) RNA-binding protei... 94 3e-20
TC204095 similar to UP|Q9MBF3 (Q9MBF3) Glycine-rich RNA-binding ... 88 1e-18
TC210743 similar to UP|Q42412 (Q42412) RNA-binding protein RZ-1,... 86 8e-18
TC223521 weakly similar to UP|Q84ZB9 (Q84ZB9) RNA recognition mo... 84 2e-17
TC225640 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, part... 83 5e-17
TC204093 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprot... 83 5e-17
AI460427 similar to GP|5726567|gb|A glycine-rich RNA-binding pro... 82 7e-17
TC204822 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, part... 82 1e-16
BM086366 80 3e-16
>TC225319 similar to UP|P93486 (P93486) Glycine-rich RNA-binding protein
PsGRBP, partial (88%)
Length = 1167
Score = 210 bits (535), Expect = 2e-55
Identities = 108/147 (73%), Positives = 128/147 (86%), Gaps = 1/147 (0%)
Frame = +3
Query: 1 MAFCNKIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYG 60
MAFCNK+GN+LRQGA +STQAPVSSMLNY+R MSSSKLFIGGLSY VDDQSL+DAF+ +G
Sbjct: 261 MAFCNKVGNVLRQGAARSTQAPVSSMLNYIRCMSSSKLFIGGLSYGVDDQSLKDAFSGFG 440
Query: 61 DVVEARVITDRETGRSRGFGFVNFTSEESATSALS-MDGQDLNGRNIRVSYANDRQAGGP 119
DVV+A+VITDR++GRSRGFGFVNF+++ESA+SALS MDG+DL+GR+IRVSYANDR + GP
Sbjct: 441 DVVDAKVITDRDSGRSRGFGFVNFSNDESASSALSAMDGKDLDGRSIRVSYANDRPS-GP 617
Query: 120 RPGGGYGGGGGYSGGGGGYSGGGGGGW 146
+ GGG GGGG SGG GGGW
Sbjct: 618 QSGGG--------GGGGYRSGGFGGGW 674
>TC225318 similar to UP|P93486 (P93486) Glycine-rich RNA-binding protein
PsGRBP, partial (86%)
Length = 749
Score = 203 bits (516), Expect = 3e-53
Identities = 104/143 (72%), Positives = 124/143 (85%), Gaps = 2/143 (1%)
Frame = +2
Query: 1 MAFCNKIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYG 60
MAFCNK+GN+LRQGA +ST APV+SMLNY+R MSSSKLFIGGLSY VDDQSL+DAF+ +G
Sbjct: 65 MAFCNKVGNVLRQGAARSTHAPVASMLNYIRCMSSSKLFIGGLSYGVDDQSLKDAFSGFG 244
Query: 61 DVVEARVITDRETGRSRGFGFVNFTSEESATSALS-MDGQDLNGRNIRVSYANDRQAGGP 119
DVV+A+VITDR++GRSRGFGFVNF+++ESA+SALS MDG+DLNGR+IRVSYAND+ + P
Sbjct: 245 DVVDAKVITDRDSGRSRGFGFVNFSNDESASSALSAMDGKDLNGRSIRVSYANDKPS-AP 421
Query: 120 RPGGGYG-GGGGYSGGGGGYSGG 141
RPGGG G GG Y G SGG
Sbjct: 422 RPGGGGGYRGGDYDGDFASRSGG 490
>TC215891 similar to GB|AAM78058.1|21928059|AY125548 AT5g61030/maf19_30
{Arabidopsis thaliana;} , partial (41%)
Length = 782
Score = 155 bits (391), Expect = 9e-39
Identities = 87/156 (55%), Positives = 114/156 (72%), Gaps = 12/156 (7%)
Frame = +2
Query: 1 MAFCNKIGNLLRQGATQSTQAPVSSMLNY---LRHMSSS---KLFIGGLSYNVDDQSLRD 54
MAF +IGNLLRQ A++ + + S ++ +R MSS+ KLFIGG+SY+ D+QSLR+
Sbjct: 50 MAFFGRIGNLLRQTASRQVSSKLRSSPSFFQAIRSMSSAPSTKLFIGGVSYSTDEQSLRE 229
Query: 55 AFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-SMDGQDLNGRNIRVSYAND 113
AF+ YG+VV+AR+I DRETGRSRGFGF+ +TS E A+SA+ ++DGQDL+GR IRV+YAN+
Sbjct: 230 AFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQALDGQDLHGRPIRVNYANE 409
Query: 114 RQAGGPRPGGGYG-----GGGGYSGGGGGYSGGGGG 144
R G GGG+G GGGGY GG Y GG GG
Sbjct: 410 RPRG--YGGGGFGSYGAVGGGGYE-GGSSYRGGYGG 508
>TC217707 similar to UP|Q941H8 (Q941H8) RNA-binding protein precursor,
partial (35%)
Length = 1008
Score = 148 bits (373), Expect = 1e-36
Identities = 81/155 (52%), Positives = 105/155 (67%), Gaps = 9/155 (5%)
Frame = +1
Query: 1 MAFCNKIGNLLRQGAT----QSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAF 56
MAF NKIGNL++ A Q S+ +R MSS+KLF+GG+SY+ DD SLR++
Sbjct: 46 MAFLNKIGNLVKNSAVKHINQDFSVSTPSLFQAIRSMSSAKLFVGGISYSTDDMSLRESP 225
Query: 57 TTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-SMDGQDLNGRNIRVSYANDRQ 115
YG+V++ +VI DRETGRSRGFGF+ F + E A+ A+ MDGQDL+GR IRV+YA +R
Sbjct: 226 ARYGEVIDVKVIMDRETGRSRGFGFITFATSEDASYAIQGMDGQDLHGRRIRVNYATERS 405
Query: 116 AGGPRPGGGYGGGGGYSGGGG--GYSGGG--GGGW 146
RP G+GG GGY G GG GY+ GG GGG+
Sbjct: 406 ----RP--GFGGDGGYRGSGGSDGYNRGGNYGGGY 492
>TC204083 similar to UP|O48567 (O48567) Glycine-rich RNA-binding protein,
partial (95%)
Length = 1019
Score = 133 bits (334), Expect = 3e-32
Identities = 63/110 (57%), Positives = 82/110 (74%), Gaps = 1/110 (0%)
Frame = +2
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS- 95
+ F+GGL++ + +L AF+ YGD+VE++VI DRETGRSRGFGFV F SE+S A++
Sbjct: 62 RCFVGGLAWVTGNDALEKAFSIYGDIVESKVINDRETGRSRGFGFVTFASEQSMKDAIAG 241
Query: 96 MDGQDLNGRNIRVSYANDRQAGGPRPGGGYGGGGGYSGGGGGYSGGGGGG 145
M+GQDL+GRNI V+ A R + G GGG+G GGGY+ G GGY GGGGGG
Sbjct: 242 MNGQDLDGRNITVNEAQTRASRGGGGGGGFGSGGGYNRGSGGYGGGGGGG 391
>TC204079 similar to UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein,
complete
Length = 748
Score = 129 bits (324), Expect = 5e-31
Identities = 65/111 (58%), Positives = 81/111 (72%), Gaps = 2/111 (1%)
Frame = +1
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-S 95
+ F+GGL++ DDQ+L AF+ YG++VE ++I DRETGRSRGFGFV F SE+S A+
Sbjct: 91 RCFVGGLAWATDDQALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQSMKDAIEG 270
Query: 96 MDGQDLNGRNIRVSYANDRQAGGPRPGGGYGGGGGYSGG-GGGYSGGGGGG 145
M+GQ+L+GRNI V+ A R G GGG GGGGGY GG GGGY GGG GG
Sbjct: 271 MNGQNLDGRNITVNEAQSRGGG----GGGGGGGGGYGGGRGGGYGGGGRGG 411
>TC204084 UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein, complete
Length = 1937
Score = 129 bits (323), Expect = 7e-31
Identities = 65/113 (57%), Positives = 83/113 (72%), Gaps = 4/113 (3%)
Frame = +2
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-S 95
+ F+GGL++ DD +L AF+ YG++VE ++I DRETGRSRGFGFV F SE+S A+ +
Sbjct: 1244 RCFVGGLAWATDDHALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQSMKDAIGA 1423
Query: 96 MDGQDLNGRNIRVSYANDRQAGGPRPGGGYGGGGGYSGGGGGY---SGGGGGG 145
M+GQ+L+GRNI V+ A R G GGG GGGGGY+ GGGGY SGGGGGG
Sbjct: 1424 MNGQNLDGRNITVNEAQSRGGG----GGGGGGGGGYNRGGGGYGGRSGGGGGG 1570
Score = 80.5 bits (197), Expect = 3e-16
Identities = 44/83 (53%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Frame = -1
Query: 34 SSSKLFIGGLSYNVDDQSLRDAFTTYGD-VVEARVITDRETGRSRGFGFVNFTSEESATS 92
S +++ +G L++ VDD +L F G V+EARVI DRE+GRSRGFGFV F S + S
Sbjct: 569 SENRVHVGNLAWGVDDVALESLFREQGKKVLEARVIYDRESGRSRGFGFVTFGSPDEVKS 390
Query: 93 AL-SMDGQDLNGRNIRVSYANDR 114
A+ S+DG DLNGR IRVS A+ +
Sbjct: 389 AIQSLDGVDLNGRAIRVSLADSK 321
Score = 73.6 bits (179), Expect = 3e-14
Identities = 43/106 (40%), Positives = 61/106 (56%), Gaps = 3/106 (2%)
Frame = -1
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTS-EESATSALS 95
KLF+G L ++VD L + F + G+V VI D+ TGRSRGFGFV +S EE+ +A
Sbjct: 878 KLFVGNLPFSVDSARLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAKQ 699
Query: 96 MDGQDLNGRNIRVSYAND--RQAGGPRPGGGYGGGGGYSGGGGGYS 139
+G +L+GR++RV+ R PR + GG + GGG S
Sbjct: 698 FNGYELDGRSLRVNSGPPPARNESAPR----FRGGSSFGSRGGGPS 573
>TC204085 similar to UP|Q8VX74 (Q8VX74) Glycine-rich RNA-binding protein,
partial (87%)
Length = 628
Score = 119 bits (298), Expect = 5e-28
Identities = 62/113 (54%), Positives = 79/113 (69%), Gaps = 3/113 (2%)
Frame = +3
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-S 95
+ F+GGL++ D+ L AF+ YGDVVE+++I DRETGRSRGFGFV F SE+S A+
Sbjct: 30 RCFVGGLAWATDNYDLEKAFSQYGDVVESKIINDRETGRSRGFGFVTFASEDSMRDAIEG 209
Query: 96 MDGQDLNGRNIRVSYANDRQAGGPRPGGGYGGGGGY--SGGGGGYSGGGGGGW 146
M+GQ+L+GRNI V+ A R + G GGGYG GGGY SGG GGY G G +
Sbjct: 210 MNGQNLDGRNITVNEAQSRGSRG-GGGGGYGSGGGYNRSGGAGGYGGRREGAY 365
>TC204105 similar to UP|Q8VX74 (Q8VX74) Glycine-rich RNA-binding protein,
partial (61%)
Length = 313
Score = 112 bits (280), Expect = 6e-26
Identities = 59/107 (55%), Positives = 77/107 (71%), Gaps = 3/107 (2%)
Frame = +1
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-S 95
+ F+GGL++ DD +L AF+ YG++VE+++I DRETGRSRGFGFV F SE S A+
Sbjct: 7 RCFVGGLAWATDDHALEKAFSHYGNIVESKIINDRETGRSRGFGFVTFASENSMKDAIEG 186
Query: 96 MDGQDLNGRNIRVSYANDRQAGGPRPGGGYGG--GGGYSGGGGGYSG 140
M+GQ+L+GRNI V N+ Q+ G R GGYGG GGY+ GGGGY G
Sbjct: 187 MNGQNLDGRNITV---NEAQSRGSR--GGYGGRREGGYNRGGGGYGG 312
>CD393416 weakly similar to GP|15822703|gb| RNA-binding protein precursor
{Nicotiana tabacum}, partial (29%)
Length = 733
Score = 98.6 bits (244), Expect = 9e-22
Identities = 47/83 (56%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
Frame = -2
Query: 21 APVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFG 80
A S+ +R MSS+KLF+GG+SY+ DD SLR++F YG+V++ +VI DRETGRSRGFG
Sbjct: 726 ASTPSLFQAIRSMSSAKLFVGGISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFG 547
Query: 81 FVNFTSEESATSAL-SMDGQDLN 102
FV F + E A+SA+ MDGQ L+
Sbjct: 546 FVTFATSEDASSAIQGMDGQVLS 478
>TC204097 homologue to UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein,
partial (82%)
Length = 764
Score = 96.3 bits (238), Expect = 5e-21
Identities = 49/80 (61%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Frame = +1
Query: 67 VITDRETGRSRGFGFVNFTSEESATSAL-SMDGQDLNGRNIRVSYANDRQAGGPRPGGGY 125
+I DRETGRSRGFGFV F SE+S A+ +M+GQ+L+GRNI V+ A R G GGG
Sbjct: 328 IINDRETGRSRGFGFVTFASEQSMKDAIGAMNGQNLDGRNITVNEAQSRGGG----GGGG 495
Query: 126 GGGGGYSGGGGGYSGGGGGG 145
GGGGGY+ GGGGY G GGG
Sbjct: 496 GGGGGYNRGGGGYGGRSGGG 555
Score = 37.4 bits (85), Expect = 0.003
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +3
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARV 67
+ F+GGL++ DD +L AF+ YG++VE +V
Sbjct: 84 RCFVGGLAWATDDHALERAFSQYGEIVETKV 176
>TC230531 weakly similar to UP|Q941H9 (Q941H9) RNA-binding protein precursor,
partial (29%)
Length = 851
Score = 93.6 bits (231), Expect = 3e-20
Identities = 46/84 (54%), Positives = 64/84 (75%), Gaps = 1/84 (1%)
Frame = +3
Query: 30 LRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEES 89
+RH SS+KLF+ GLSY+ ++ LRDAF +G+++E +VI D TG+SRG+GFV F SE +
Sbjct: 396 VRHHSSTKLFVTGLSYDTNEPILRDAFGQHGEIIEVKVICDHVTGKSRGYGFVRFVSETT 575
Query: 90 ATSA-LSMDGQDLNGRNIRVSYAN 112
A +A M+GQ L+GR IRVSYA+
Sbjct: 576 AAAARKEMNGQILDGRRIRVSYAH 647
>TC204095 similar to UP|Q9MBF3 (Q9MBF3) Glycine-rich RNA-binding protein,
partial (80%)
Length = 758
Score = 88.2 bits (217), Expect = 1e-18
Identities = 48/83 (57%), Positives = 57/83 (67%), Gaps = 3/83 (3%)
Frame = +3
Query: 67 VITDRETGRSRGFGFVNFTSEESATSAL-SMDGQDLNGRNIRVSYANDRQAGGPRPGGGY 125
+I DRETGRSRGFGFV F SE+S A+ M+GQ+L+GRNI V+ A R + G GGGY
Sbjct: 396 IINDRETGRSRGFGFVTFASEDSMRDAIEGMNGQNLDGRNITVNEAQSRGSRG-GGGGGY 572
Query: 126 GGGGGY--SGGGGGYSGGGGGGW 146
G GGGY SGG GGY G G +
Sbjct: 573 GSGGGYNRSGGAGGYGGRREGAY 641
Score = 37.4 bits (85), Expect = 0.003
Identities = 15/31 (48%), Positives = 23/31 (73%)
Frame = +3
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARV 67
+ F+GGL++ D+ L AF+ YGDVVE++V
Sbjct: 33 RCFVGGLAWATDNYDLEKAFSQYGDVVESKV 125
>TC210743 similar to UP|Q42412 (Q42412) RNA-binding protein RZ-1, partial
(53%)
Length = 452
Score = 85.5 bits (210), Expect = 8e-18
Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 6/112 (5%)
Frame = +3
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-S 95
+ FIGGL+++ D+ L+D F +G ++EA+V+ D+ +GRSRGFGFV F +++ A+ +
Sbjct: 84 RCFIGGLAWSTSDRKLKDTFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAIDA 263
Query: 96 MDGQDLNGRNIRVSYANDRQAGGPRPGGGYGGGG-----GYSGGGGGYSGGG 142
M+G DL+GR I V A +Q G Y G + GGGG S GG
Sbjct: 264 MNGMDLDGRTITVDRAQPQQGSTRDDGDRYRERGRDRDRDHGGGGGRGSNGG 419
>TC223521 weakly similar to UP|Q84ZB9 (Q84ZB9) RNA recognition motif
(RRM)-containing protein-like, partial (57%)
Length = 651
Score = 84.0 bits (206), Expect = 2e-17
Identities = 42/88 (47%), Positives = 64/88 (72%), Gaps = 1/88 (1%)
Frame = +1
Query: 25 SMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNF 84
S+L++ R ++ KLF+GGLS+ + +L +AF+ YG V+EA+++TDR + RS+GFGFV F
Sbjct: 49 SLLSFRRGIAY-KLFVGGLSFYTTENALSEAFSNYGQVIEAKIVTDRVSDRSKGFGFVTF 225
Query: 85 TSEESATSAL-SMDGQDLNGRNIRVSYA 111
S++ A +A+ M G+ LNGR I V YA
Sbjct: 226 ASQDEAENAIEDMKGKTLNGRVIFVDYA 309
>TC225640 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, partial (66%)
Length = 1290
Score = 82.8 bits (203), Expect = 5e-17
Identities = 41/82 (50%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Frame = +3
Query: 34 SSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSA 93
S ++++G L + VDD L F+ +G V +ARV+ DRETGRSRGFGFV +SE A
Sbjct: 726 SGLRVYVGNLPWEVDDARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDA 905
Query: 94 L-SMDGQDLNGRNIRVSYANDR 114
+ ++DGQ L+GR IRV+ A DR
Sbjct: 906 IAALDGQSLDGRAIRVNVAQDR 971
Score = 62.8 bits (151), Expect = 6e-11
Identities = 35/86 (40%), Positives = 50/86 (57%), Gaps = 1/86 (1%)
Frame = +3
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALSM 96
K+F+G L +++D ++L F G V A VI +R T RSRGFGFV ++ E A+ M
Sbjct: 444 KIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAVEM 623
Query: 97 -DGQDLNGRNIRVSYANDRQAGGPRP 121
G +LNGR + V+ A + A RP
Sbjct: 624 FSGYELNGRVLTVNKAAPKGAQPERP 701
>TC204093 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A,
chloroplast precursor (CP29A), partial (63%)
Length = 1403
Score = 82.8 bits (203), Expect = 5e-17
Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 9/108 (8%)
Frame = +2
Query: 34 SSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSA 93
S +++ + L++ VD+ +L+ F G+V+EARVI DRE+GRSRGFGFV F+S + SA
Sbjct: 641 SENRVHVSNLAWGVDNVALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVNSA 820
Query: 94 L-SMDGQDLNGRNIRVSYANDRQ--------AGGPRPGGGYGGGGGYS 132
+ S++G DLNGR IRVS A+ + + P G Y G G Y+
Sbjct: 821 IQSLNGVDLNGRAIRVSLADSKPKQF*GFSFSSIPERGFRYLGLGSYT 964
Score = 74.7 bits (182), Expect = 1e-14
Identities = 44/106 (41%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Frame = +2
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTS-EESATSALS 95
KLF+G L +NVD L + F + G+V VI D+ TGRSRGFGFV +S EE+ +A
Sbjct: 332 KLFVGNLPFNVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAQQ 511
Query: 96 MDGQDLNGRNIRVSYAND--RQAGGPRPGGGYGGGGGYSGGGGGYS 139
+G +L+GR +RV+ R PR + GG + GGG S
Sbjct: 512 FNGYELDGRALRVNSGPPPARNESAPR----FRGGSSFGSRGGGPS 637
>AI460427 similar to GP|5726567|gb|A glycine-rich RNA-binding protein
{Glycine max}, partial (60%)
Length = 292
Score = 82.4 bits (202), Expect = 7e-17
Identities = 46/92 (50%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Frame = +2
Query: 39 FIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-SMD 97
F+ GL++ D +L AF+ YG++VE ++I+ RETGRSRGFGF F SE T A+ +M+
Sbjct: 26 FVCGLAWATDHHAL*RAFSQYGEIVETKIISYRETGRSRGFGF*TFASEHPMTDAI*AMN 205
Query: 98 GQDLNGRNIRVSYANDRQAGGPRPGGGYGGGG 129
GQ+LN RNI V N+ Q+ G GGG G GG
Sbjct: 206 GQNLN*RNITV---NEAQSRGGCSGGGSGLGG 292
>TC204822 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, partial (67%)
Length = 1232
Score = 81.6 bits (200), Expect = 1e-16
Identities = 40/86 (46%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Frame = +3
Query: 34 SSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSA 93
SS +++G L ++VD+ L+ F+ +G+VV ARV+ DRE+GRSRGFGFV + E A
Sbjct: 612 SSLSIYVGNLPWDVDNTRLKQIFSKHGNVVNARVVYDRESGRSRGFGFVTMSDETEMNDA 791
Query: 94 L-SMDGQDLNGRNIRVSYANDRQAGG 118
+ ++DG+ L+GR I+VS A DR G
Sbjct: 792 VAALDGESLDGRAIKVSVAEDRPRRG 869
Score = 65.5 bits (158), Expect = 9e-12
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Frame = +3
Query: 28 NYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSE 87
+++ +KLF+G L Y+VD Q L F G V A VI +RET +SRGFGFV ++
Sbjct: 306 SFVEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTV 485
Query: 88 ESATSAL-SMDGQDLNGRNIRVSYANDRQAGGPRP 121
E A SA+ + D++GR + V+ A+ R RP
Sbjct: 486 EEAESAVEKFNRYDIDGRLLTVNKASPRGTRPERP 590
>BM086366
Length = 427
Score = 80.5 bits (197), Expect = 3e-16
Identities = 42/108 (38%), Positives = 63/108 (57%), Gaps = 1/108 (0%)
Frame = +2
Query: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL- 94
+++F+GGLS+ V ++ L AF YG ++E +++ +R+TGR RGFGF+ F A+
Sbjct: 89 NRIFVGGLSWEVTERQLEHAFARYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 268
Query: 95 SMDGQDLNGRNIRVSYANDRQAGGPRPGGGYGGGGGYSGGGGGYSGGG 142
M G+++ R I V+ A + GG GY GGYS GG G G G
Sbjct: 269 EMHGREIGDRIISVNKAQPKM-GGDDVDQGY--RGGYSSGGRGSYGAG 403
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.137 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,928,754
Number of Sequences: 63676
Number of extensions: 75273
Number of successful extensions: 12275
Number of sequences better than 10.0: 980
Number of HSP's better than 10.0 without gapping: 2402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6541
length of query: 146
length of database: 12,639,632
effective HSP length: 88
effective length of query: 58
effective length of database: 7,036,144
effective search space: 408096352
effective search space used: 408096352
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)
Medicago: description of AC146705.10