BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146683.3 + phase: 0 /pseudo
(122 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC230201 29 0.27
TC208899 similar to UP|Q9LHD1 (Q9LHD1) Multidrug resistance p-gl... 28 0.45
BI468846 similar to SP|P33079|AXA5_S Auxin-induced protein 10A5.... 28 0.59
BM731266 27 1.3
TC223635 weakly similar to UP|CLH1_ARATH (O22527) Chlorophyllase... 27 1.3
TC224247 similar to UP|Q9FF84 (Q9FF84) ATP-dependent RNA helicas... 27 1.7
TC219748 similar to GB|AAQ62420.1|34146824|BT010419 At3g12170 {A... 26 2.2
TC218999 similar to GB|AAS09996.1|41618982|AY519526 MYB transcri... 26 2.2
TC205646 weakly similar to UP|Q8L698 (Q8L698) Defensin precursor... 26 2.2
BG649950 26 2.2
TC204255 PDB|1OD5_A.0|33357661|1OD5_A Chain A, Crystal Structure... 26 2.2
TC229072 26 2.9
TC220698 similar to GB|AAM67427.1|21689611|AY122894 At1g27650/T2... 26 2.9
TC226765 similar to GB|AAN28894.1|23506069|AY143955 At2g28370/T1... 25 3.8
TC235080 25 3.8
TC233058 25 5.0
TC224703 similar to UP|RHRE_PEA (Q9S8P4) Rhicadhesin receptor pr... 25 5.0
BM271025 similar to GP|29648559|gb| methionine R-sulfoxide reduc... 25 5.0
TC234723 similar to UP|Q9FHY5 (Q9FHY5) Emb|CAB72466.1 (At5g41980... 25 5.0
TC215204 similar to UP|Q8LDQ4 (Q8LDQ4) PP2A regulatory subunit, ... 25 5.0
>TC230201
Length = 593
Score = 29.3 bits (64), Expect = 0.27
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = -1
Query: 9 SIAYFLSTLHYTTWTNTACSKAGITVAIEDIHSTYNFKSRNRSTGVAFSAALGLLECCFV 68
S A+ L+ + + AC A AI+ + S +S RS+ + S + LL CC
Sbjct: 311 SAAFILTAANSFSLLRMACQSASEDAAIDAMASWTREESSWRSSTRSVSLSKALLCCCKS 132
Query: 69 NTGSRIMVFASGPGLVLDSDF 89
+ + +S P + L S F
Sbjct: 131 LESTTLSTPSSEPSISLSSRF 69
>TC208899 similar to UP|Q9LHD1 (Q9LHD1) Multidrug resistance p-glycoprotein,
partial (14%)
Length = 983
Score = 28.5 bits (62), Expect = 0.45
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = +3
Query: 7 CGSIAYF----LSTLHYTTWTNTACSKAGITVAI 36
CG AY+ L T H TT NT+C+KAG T +I
Sbjct: 525 CG--AYYSLVSLQTRHATTPNNTSCTKAGSTHSI 620
>BI468846 similar to SP|P33079|AXA5_S Auxin-induced protein 10A5. [Soybean]
{Glycine max}, partial (73%)
Length = 368
Score = 28.1 bits (61), Expect = 0.59
Identities = 10/35 (28%), Positives = 20/35 (56%)
Frame = +2
Query: 81 PGLVLDSDFWQSMRTHNDIYICNGHLAVYTSKLLR 115
PG++ + F + TH ++ + G+LAVY ++
Sbjct: 59 PGIIRQASFSTAKATHKELEVPKGYLAVYVGDKMK 163
>BM731266
Length = 424
Score = 26.9 bits (58), Expect = 1.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 101 ICNGHLAVYTSKLLRGCRCVC 121
+C + +VYT ++ GC+C C
Sbjct: 348 LCQ*YESVYTQLMVNGCKCFC 410
>TC223635 weakly similar to UP|CLH1_ARATH (O22527) Chlorophyllase 1 (AtCLH1)
(Chlorophyll-chlorophyllido hydrolase 1) (Chlase 1)
(Coronatine-induced protein 1) (CORI1) , partial (16%)
Length = 455
Score = 26.9 bits (58), Expect = 1.3
Identities = 12/34 (35%), Positives = 16/34 (46%)
Frame = +2
Query: 18 HYTTWTNTACSKAGITVAIEDIHSTYNFKSRNRS 51
H TW +T CS AGI+ + + F R S
Sbjct: 251 HSFTWIHTCCSSAGISSTLNTFEFFFFFNLRTIS 352
>TC224247 similar to UP|Q9FF84 (Q9FF84) ATP-dependent RNA helicase A-like
protein, partial (7%)
Length = 706
Score = 26.6 bits (57), Expect = 1.7
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Frame = -1
Query: 12 YFLSTLHYTTWTNTACSK---AGITVAIED---IHSTYNFKSRNRSTGVAFSAALGLLEC 65
+ L H + +++C K AG+ + D H T + N + F A+LG+L C
Sbjct: 424 HVLMKCHLNPYLSSSCIKLHDAGLLIQD*DRTNSHKTMYGRHVNHGLALIFYASLGVLAC 245
Query: 66 C 66
C
Sbjct: 244 C 242
>TC219748 similar to GB|AAQ62420.1|34146824|BT010419 At3g12170 {Arabidopsis
thaliana;} , partial (91%)
Length = 1074
Score = 26.2 bits (56), Expect = 2.2
Identities = 12/28 (42%), Positives = 17/28 (59%), Gaps = 3/28 (10%)
Frame = -1
Query: 62 LLECCFVNTGS---RIMVFASGPGLVLD 86
LL CCF++T + R+ VF G G+ D
Sbjct: 180 LLRCCFLHTKNLIERVFVFIEGVGIGFD 97
>TC218999 similar to GB|AAS09996.1|41618982|AY519526 MYB transcription
factor {Arabidopsis thaliana;} , partial (69%)
Length = 676
Score = 26.2 bits (56), Expect = 2.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 26 ACSKAGITVAIEDIHSTYNFKSRNRSTGVAFSAALGLLEC 65
ACS V +E H+T + + G+ F+ +L L+EC
Sbjct: 59 ACST*V*NVTLEPFHTTLSVP*FLKENGILFNLSLRLMEC 178
>TC205646 weakly similar to UP|Q8L698 (Q8L698) Defensin precursor, partial
(54%)
Length = 524
Score = 26.2 bits (56), Expect = 2.2
Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Frame = +3
Query: 96 HND--IYICNGHLAVYTSKL 113
H+D IYIC HLA++++KL
Sbjct: 429 HHDLVIYICRDHLALFSNKL 488
>BG649950
Length = 228
Score = 26.2 bits (56), Expect = 2.2
Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Frame = +2
Query: 96 HND--IYICNGHLAVYTSKL 113
H+D IYIC HLA++++KL
Sbjct: 131 HHDLVIYICRDHLALFSNKL 190
>TC204255 PDB|1OD5_A.0|33357661|1OD5_A Chain A, Crystal Structure Of
Glycinin A3b4 Subunit Homohexamer. {Glycine max;} ,
partial (6%)
Length = 519
Score = 26.2 bits (56), Expect = 2.2
Identities = 13/37 (35%), Positives = 20/37 (53%)
Frame = +3
Query: 22 WTNTACSKAGITVAIEDIHSTYNFKSRNRSTGVAFSA 58
WT + + +++ D S + F + NRS VAFSA
Sbjct: 24 WTYNTGDEPVVAISLLDT-SNFTFNATNRSLSVAFSA 131
>TC229072
Length = 1166
Score = 25.8 bits (55), Expect = 2.9
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -2
Query: 10 IAYFLSTLHYTTWTNTACSKAGITVAIEDIHSTYNFKSRNRSTGVAFSAALGLLECC 66
+ F + W AC++ + VAI++ + + R + V+F L L ECC
Sbjct: 175 VGVFWGKEEHKRWEERACNEERLRVAIDE---RWR*RERKKQLSVSF---LRLRECC 23
>TC220698 similar to GB|AAM67427.1|21689611|AY122894 At1g27650/T22C5_2
{Arabidopsis thaliana;} , partial (70%)
Length = 995
Score = 25.8 bits (55), Expect = 2.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 64 ECCFVNTGSRIMVFASGPGLVLDSDFWQSMR 94
+CC++ GSR+ S PG+++ ++ R
Sbjct: 324 KCCWILRGSRVWPCGSTPGVIMSGRWYMLER 232
>TC226765 similar to GB|AAN28894.1|23506069|AY143955 At2g28370/T1B3.11
{Arabidopsis thaliana;} , partial (94%)
Length = 1099
Score = 25.4 bits (54), Expect = 3.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 26 ACSKAGITVAIEDIHSTYNFKSRNRSTGVAFSAALGLLECCFVNT 70
AC+ AGITV I++ + S +++ V F A G+ C+ T
Sbjct: 584 ACASAGITVLIDN-----DLGSCSQNHCVQFETATGMAFLCWFTT 703
>TC235080
Length = 807
Score = 25.4 bits (54), Expect = 3.8
Identities = 13/40 (32%), Positives = 20/40 (49%)
Frame = +1
Query: 10 IAYFLSTLHYTTWTNTACSKAGITVAIEDIHSTYNFKSRN 49
+ + +L TWT ++ KAGIT A + Y+ S N
Sbjct: 469 VPFLALSLLTLTWTTSSFPKAGITGATLTVK*LYSMDSTN 588
>TC233058
Length = 678
Score = 25.0 bits (53), Expect = 5.0
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 113 LLRGCRCVCC 122
L RGCRC CC
Sbjct: 263 LARGCRCSCC 234
>TC224703 similar to UP|RHRE_PEA (Q9S8P4) Rhicadhesin receptor precursor
(Germin-like protein), partial (91%)
Length = 1092
Score = 25.0 bits (53), Expect = 5.0
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 102 CNGHLAVYTSKLLRGCRCVCC 122
CN L V TS C C CC
Sbjct: 810 CNVSLIVLTSYTFLSCPCSCC 872
>BM271025 similar to GP|29648559|gb| methionine R-sulfoxide reductase {Danio
rerio}, partial (13%)
Length = 438
Score = 25.0 bits (53), Expect = 5.0
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +3
Query: 82 GLVLDSDFWQSMRTHNDIYICNGHLAVYTSKLLRGCRCVC 121
G + + FWQ RT I+ L Y L C CVC
Sbjct: 276 GSFVQTLFWQFSRTWELIFSAYRFLFFYHFFLSNDC*CVC 395
>TC234723 similar to UP|Q9FHY5 (Q9FHY5) Emb|CAB72466.1 (At5g41980), partial
(24%)
Length = 837
Score = 25.0 bits (53), Expect = 5.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 87 SDFWQSMRTHNDIYICNGHLAVYTSKLLRGCRCV 120
S+FW T + I +C+ TS++ GC C+
Sbjct: 301 SNFWDLKGTVSYIDVCSFLSITNTSEVSGGCMCI 402
>TC215204 similar to UP|Q8LDQ4 (Q8LDQ4) PP2A regulatory subunit, partial
(10%)
Length = 689
Score = 25.0 bits (53), Expect = 5.0
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -2
Query: 12 YFLSTLHYTTWTNTACSKAGITVAIEDIHSTYNFKSRNRSTGVAFSAAL 60
YF T H TA I ++ S+ N S STGV +AAL
Sbjct: 169 YFSETKHIQVCLYTAKDMVVIQASLSSSPSSSNTSSSPASTGVDRAAAL 23
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.326 0.135 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,960,681
Number of Sequences: 63676
Number of extensions: 92662
Number of successful extensions: 755
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of query: 122
length of database: 12,639,632
effective HSP length: 98
effective length of query: 24
effective length of database: 6,399,384
effective search space: 153585216
effective search space used: 153585216
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)
Medicago: description of AC146683.3