Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146683.17 - phase: 0 
         (494 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC233594 weakly similar to UP|Q8MZD1 (Q8MZD1) AT11514p, partial ...   224  7e-59
AW781808 weakly similar to GP|22093589|dbj P0674H09.7 {Oryza sat...    95  8e-20
TC216989                                                               84  1e-16
AW734594                                                               37  0.020
TC204285 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr...    31  1.4
TC230631 weakly similar to UP|Q94AZ7 (Q94AZ7) AT5g43680/MQO24_4,...    30  3.2
TC208549                                                               30  3.2
BM891319 GP|169913|gb| beta-amylase {Glycine max}, partial (27%)       29  4.2
TC225462 UP|Q42795 (Q42795) Beta-amylase  , complete                   29  4.2
BF009378 similar to GP|22654962|gb| AT5g60420/muf9_70 {Arabidops...    29  5.5

>TC233594 weakly similar to UP|Q8MZD1 (Q8MZD1) AT11514p, partial (6%)
          Length = 446

 Score =  224 bits (571), Expect = 7e-59
 Identities = 109/142 (76%), Positives = 128/142 (89%)
 Frame = +3

Query: 121 GINETFSDSINKGENALRSSVDTATSFIDSVVKNATTSADNAFSKVFSAADQTGDLANKK 180
           GINE+FS SINKGENALRSS+DTATSF+DS+VK AT S DNAFSK FS+ DQTG+L NKK
Sbjct: 3   GINESFSASINKGENALRSSLDTATSFVDSIVKTATKSVDNAFSKAFSSVDQTGELTNKK 182

Query: 181 ITSFSSEIDGVTSKAPGLVIDVLRRTVVAVESSLSSGASYVVYLYGSAKEFIPAEIRDTV 240
           +TSFSSE+ GVT+KAP + IDVLRRT++ VESSL+SGASYVVYLYGSAKE +PA IRDTV
Sbjct: 183 LTSFSSELTGVTNKAPAVAIDVLRRTIIVVESSLTSGASYVVYLYGSAKELLPAGIRDTV 362

Query: 241 NIYEDKAAQVLRPVGSATQQIY 262
           N+YEDKA ++LRPVGSATQ++Y
Sbjct: 363 NVYEDKATEILRPVGSATQRLY 428


>AW781808 weakly similar to GP|22093589|dbj P0674H09.7 {Oryza sativa
           (japonica cultivar-group)}, partial (9%)
          Length = 223

 Score = 94.7 bits (234), Expect = 8e-20
 Identities = 51/65 (78%), Positives = 53/65 (81%)
 Frame = +3

Query: 332 CEKKMVFLIFDGLLGFAMQV*LQLRLMAPYASC*RGVET*MTP*LLLLFKI*KLLRTVPR 391
           CEK M FLI DGLLGF MQV*L LRLMAPYASC*R VE  M P*LLLLF+I*+ LRTVP 
Sbjct: 27  CEKNMAFLISDGLLGFVMQV*LLLRLMAPYASC*RVVENLMIP*LLLLFEI*RWLRTVPG 206

Query: 392 LLCWM 396
           L CWM
Sbjct: 207 L*CWM 221


>TC216989 
          Length = 881

 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 45/59 (76%), Positives = 48/59 (81%)
 Frame = +1

Query: 411 KLGLRIRTWSKVAFSLG*NKVSASRNSNLRQHLPYSTRKLKQF*RILDLLLGNF*VLVR 469
           KLG RI TW K AF LG*NKVS SRNSNLRQH P S RKLKQF R+L LLLGNF*V+V+
Sbjct: 1   KLGSRIHTWLKEAFILG*NKVSVSRNSNLRQHFPSSMRKLKQFWRMLVLLLGNF*VMVQ 177


>AW734594 
          Length = 227

 Score = 37.0 bits (84), Expect = 0.020
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = +3

Query: 1   DFESRGVVEENVHLGLYHGTPSLRSSFTAQA 31
           D ESR V EE+VHL   +G  SLR+SF  QA
Sbjct: 135 DLESRCVAEESVHLASQYGAHSLRNSFAVQA 227


>TC204285 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
           precursor, partial (32%)
          Length = 1539

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 2/136 (1%)
 Frame = +3

Query: 63  AKQSTEVSEPLVAPTVHPEAILSSTDITSGKIESVPSLIKGG-NESLAATKASATEVFA- 120
           A  ST+ +E    PT       +ST  T     S     KG  N +  A+  +A E  + 
Sbjct: 534 ASSSTKTTEETTKPT--KGCASTSTKTTKESSSSSTKTTKGATNTTKGASSNTAKEAMST 707

Query: 121 GINETFSDSINKGENALRSSVDTATSFIDSVVKNATTSADNAFSKVFSAADQTGDLANKK 180
            + ET S +      +  S++  ATS   S    ATTS+ +   +  S +  T  ++   
Sbjct: 708 NLQETTSTNP*VATTSSSSNLQEATSTSSSTP*VATTSSSSNLQEATSTSSSTP*VSTTS 887

Query: 181 ITSFSSEIDGVTSKAP 196
            +S   E    +S  P
Sbjct: 888 SSSNLQEATSTSSSTP 935


>TC230631 weakly similar to UP|Q94AZ7 (Q94AZ7) AT5g43680/MQO24_4, partial
           (53%)
          Length = 910

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 165 KVFSAADQTGDLANKKITSFSSEIDGVTSKAPGLVIDVLR 204
           ++FS  D +G L + +I  +S     +  K PG +ID+LR
Sbjct: 450 ELFSCPDSSGFLLSFEIDVWSGSSTSLRVKGPGFMIDILR 331


>TC208549 
          Length = 273

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 314 IYPLNQLSSSWPGTQMLTCEKKMVFLIFDG 343
           IY ++ + +S  G ++  C KK VFL++DG
Sbjct: 244 IYHISIICTSTNGYKITICSKKKVFLVYDG 155


>BM891319 GP|169913|gb| beta-amylase {Glycine max}, partial (27%)
          Length = 422

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 15/26 (57%), Positives = 16/26 (60%)
 Frame = -3

Query: 35  VSAWDNSSLSTGEFRYSLSTVPEELV 60
           V  W+  SLST   RYSL  VPE LV
Sbjct: 273 VLPWNIGSLSTPTVRYSLFRVPERLV 196


>TC225462 UP|Q42795 (Q42795) Beta-amylase  , complete
          Length = 1803

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 15/26 (57%), Positives = 16/26 (60%)
 Frame = -1

Query: 35  VSAWDNSSLSTGEFRYSLSTVPEELV 60
           V  W+  SLST   RYSL  VPE LV
Sbjct: 555 VLPWNIGSLSTPTVRYSLFRVPERLV 478


>BF009378 similar to GP|22654962|gb| AT5g60420/muf9_70 {Arabidopsis
           thaliana}, partial (5%)
          Length = 424

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 84  LSSTDITSGKIESVPSLIKGGNESLAATKASATEVFAGINETFSDS 129
           +SS+D  SG+ E  PS+ +GG E +  +  +  E+ + +N     +
Sbjct: 242 MSSSDTGSGRDEDDPSINQGGGEHIGYSTTNGIEMNSVVNNNIDSA 379


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.333    0.143    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,530,837
Number of Sequences: 63676
Number of extensions: 211916
Number of successful extensions: 1511
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1511
length of query: 494
length of database: 12,639,632
effective HSP length: 101
effective length of query: 393
effective length of database: 6,208,356
effective search space: 2439883908
effective search space used: 2439883908
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 61 (28.1 bits)


Medicago: description of AC146683.17