BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146683.17 - phase: 0
(494 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC233594 weakly similar to UP|Q8MZD1 (Q8MZD1) AT11514p, partial ... 224 7e-59
AW781808 weakly similar to GP|22093589|dbj P0674H09.7 {Oryza sat... 95 8e-20
TC216989 84 1e-16
AW734594 37 0.020
TC204285 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 31 1.4
TC230631 weakly similar to UP|Q94AZ7 (Q94AZ7) AT5g43680/MQO24_4,... 30 3.2
TC208549 30 3.2
BM891319 GP|169913|gb| beta-amylase {Glycine max}, partial (27%) 29 4.2
TC225462 UP|Q42795 (Q42795) Beta-amylase , complete 29 4.2
BF009378 similar to GP|22654962|gb| AT5g60420/muf9_70 {Arabidops... 29 5.5
>TC233594 weakly similar to UP|Q8MZD1 (Q8MZD1) AT11514p, partial (6%)
Length = 446
Score = 224 bits (571), Expect = 7e-59
Identities = 109/142 (76%), Positives = 128/142 (89%)
Frame = +3
Query: 121 GINETFSDSINKGENALRSSVDTATSFIDSVVKNATTSADNAFSKVFSAADQTGDLANKK 180
GINE+FS SINKGENALRSS+DTATSF+DS+VK AT S DNAFSK FS+ DQTG+L NKK
Sbjct: 3 GINESFSASINKGENALRSSLDTATSFVDSIVKTATKSVDNAFSKAFSSVDQTGELTNKK 182
Query: 181 ITSFSSEIDGVTSKAPGLVIDVLRRTVVAVESSLSSGASYVVYLYGSAKEFIPAEIRDTV 240
+TSFSSE+ GVT+KAP + IDVLRRT++ VESSL+SGASYVVYLYGSAKE +PA IRDTV
Sbjct: 183 LTSFSSELTGVTNKAPAVAIDVLRRTIIVVESSLTSGASYVVYLYGSAKELLPAGIRDTV 362
Query: 241 NIYEDKAAQVLRPVGSATQQIY 262
N+YEDKA ++LRPVGSATQ++Y
Sbjct: 363 NVYEDKATEILRPVGSATQRLY 428
>AW781808 weakly similar to GP|22093589|dbj P0674H09.7 {Oryza sativa
(japonica cultivar-group)}, partial (9%)
Length = 223
Score = 94.7 bits (234), Expect = 8e-20
Identities = 51/65 (78%), Positives = 53/65 (81%)
Frame = +3
Query: 332 CEKKMVFLIFDGLLGFAMQV*LQLRLMAPYASC*RGVET*MTP*LLLLFKI*KLLRTVPR 391
CEK M FLI DGLLGF MQV*L LRLMAPYASC*R VE M P*LLLLF+I*+ LRTVP
Sbjct: 27 CEKNMAFLISDGLLGFVMQV*LLLRLMAPYASC*RVVENLMIP*LLLLFEI*RWLRTVPG 206
Query: 392 LLCWM 396
L CWM
Sbjct: 207 L*CWM 221
>TC216989
Length = 881
Score = 84.3 bits (207), Expect = 1e-16
Identities = 45/59 (76%), Positives = 48/59 (81%)
Frame = +1
Query: 411 KLGLRIRTWSKVAFSLG*NKVSASRNSNLRQHLPYSTRKLKQF*RILDLLLGNF*VLVR 469
KLG RI TW K AF LG*NKVS SRNSNLRQH P S RKLKQF R+L LLLGNF*V+V+
Sbjct: 1 KLGSRIHTWLKEAFILG*NKVSVSRNSNLRQHFPSSMRKLKQFWRMLVLLLGNF*VMVQ 177
>AW734594
Length = 227
Score = 37.0 bits (84), Expect = 0.020
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +3
Query: 1 DFESRGVVEENVHLGLYHGTPSLRSSFTAQA 31
D ESR V EE+VHL +G SLR+SF QA
Sbjct: 135 DLESRCVAEESVHLASQYGAHSLRNSFAVQA 227
>TC204285 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (32%)
Length = 1539
Score = 30.8 bits (68), Expect = 1.4
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 2/136 (1%)
Frame = +3
Query: 63 AKQSTEVSEPLVAPTVHPEAILSSTDITSGKIESVPSLIKGG-NESLAATKASATEVFA- 120
A ST+ +E PT +ST T S KG N + A+ +A E +
Sbjct: 534 ASSSTKTTEETTKPT--KGCASTSTKTTKESSSSSTKTTKGATNTTKGASSNTAKEAMST 707
Query: 121 GINETFSDSINKGENALRSSVDTATSFIDSVVKNATTSADNAFSKVFSAADQTGDLANKK 180
+ ET S + + S++ ATS S ATTS+ + + S + T ++
Sbjct: 708 NLQETTSTNP*VATTSSSSNLQEATSTSSSTP*VATTSSSSNLQEATSTSSSTP*VSTTS 887
Query: 181 ITSFSSEIDGVTSKAP 196
+S E +S P
Sbjct: 888 SSSNLQEATSTSSSTP 935
>TC230631 weakly similar to UP|Q94AZ7 (Q94AZ7) AT5g43680/MQO24_4, partial
(53%)
Length = 910
Score = 29.6 bits (65), Expect = 3.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 165 KVFSAADQTGDLANKKITSFSSEIDGVTSKAPGLVIDVLR 204
++FS D +G L + +I +S + K PG +ID+LR
Sbjct: 450 ELFSCPDSSGFLLSFEIDVWSGSSTSLRVKGPGFMIDILR 331
>TC208549
Length = 273
Score = 29.6 bits (65), Expect = 3.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 314 IYPLNQLSSSWPGTQMLTCEKKMVFLIFDG 343
IY ++ + +S G ++ C KK VFL++DG
Sbjct: 244 IYHISIICTSTNGYKITICSKKKVFLVYDG 155
>BM891319 GP|169913|gb| beta-amylase {Glycine max}, partial (27%)
Length = 422
Score = 29.3 bits (64), Expect = 4.2
Identities = 15/26 (57%), Positives = 16/26 (60%)
Frame = -3
Query: 35 VSAWDNSSLSTGEFRYSLSTVPEELV 60
V W+ SLST RYSL VPE LV
Sbjct: 273 VLPWNIGSLSTPTVRYSLFRVPERLV 196
>TC225462 UP|Q42795 (Q42795) Beta-amylase , complete
Length = 1803
Score = 29.3 bits (64), Expect = 4.2
Identities = 15/26 (57%), Positives = 16/26 (60%)
Frame = -1
Query: 35 VSAWDNSSLSTGEFRYSLSTVPEELV 60
V W+ SLST RYSL VPE LV
Sbjct: 555 VLPWNIGSLSTPTVRYSLFRVPERLV 478
>BF009378 similar to GP|22654962|gb| AT5g60420/muf9_70 {Arabidopsis
thaliana}, partial (5%)
Length = 424
Score = 28.9 bits (63), Expect = 5.5
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 84 LSSTDITSGKIESVPSLIKGGNESLAATKASATEVFAGINETFSDS 129
+SS+D SG+ E PS+ +GG E + + + E+ + +N +
Sbjct: 242 MSSSDTGSGRDEDDPSINQGGGEHIGYSTTNGIEMNSVVNNNIDSA 379
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.333 0.143 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,530,837
Number of Sequences: 63676
Number of extensions: 211916
Number of successful extensions: 1511
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1511
length of query: 494
length of database: 12,639,632
effective HSP length: 101
effective length of query: 393
effective length of database: 6,208,356
effective search space: 2439883908
effective search space used: 2439883908
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 61 (28.1 bits)
Medicago: description of AC146683.17