BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146683.16 + phase: 0
(1672 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NP395547 reverse transcriptase [Glycine max] 398 e-110
NP595172 polyprotein [Glycine max] 396 e-110
NP395548 reverse transcriptase [Glycine max] 383 e-106
BE802896 187 4e-47
BE660092 weakly similar to GP|9884624|dbj retroelement pol polyp... 186 7e-47
CF922488 182 1e-45
BE801213 weakly similar to GP|6691193|gb| F7F22.17 {Arabidopsis ... 105 2e-42
BI321666 165 1e-40
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 135 1e-31
TC232867 similar to UP|Q9MA68 (Q9MA68) F2J6.13 protein, partial ... 134 4e-31
TC234722 similar to UP|Q6WAY9 (Q6WAY9) Pol (Fragment), partial (... 128 2e-29
NP334778 reverse transcriptase [Glycine max] 124 3e-28
TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%) 124 3e-28
TC232398 82 8e-28
TC231258 similar to UP|Q886T6 (Q886T6) Sensory box histidine kin... 122 1e-27
TC222094 84 2e-25
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 109 1e-23
BQ133845 101 2e-21
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 97 8e-20
AW570005 87 6e-17
>NP395547 reverse transcriptase [Glycine max]
Length = 762
Score = 398 bits (1022), Expect = e-110
Identities = 184/254 (72%), Positives = 216/254 (84%)
Frame = +1
Query: 799 VKKEVLKLLDAGVIYPISDSKWVSPVQVVPKKGGLTVIKNDKNESIATRTVTGWRMCIDY 858
V+KEV KLL+AG+IYPISDS WVSPVQVVPKKGG+TV+KND+NE I TR VT WRMCIDY
Sbjct: 1 VRKEVFKLLEAGLIYPISDSSWVSPVQVVPKKGGMTVVKNDRNELIPTRRVTRWRMCIDY 180
Query: 859 RKLNKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGT 918
RKLN+ATRKDH+PLPF+DQML+RLA+ S + +LDGYSG+ QI + P DQEKT FTCPF
Sbjct: 181 RKLNEATRKDHYPLPFMDQMLKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCPFSV 360
Query: 919 FAYRRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLER 978
FAYRRMPFGLCNA TFQRCMM+IF D VEK +EVFMDDFS G++F +CL NLEKVL+R
Sbjct: 361 FAYRRMPFGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLANLEKVLQR 540
Query: 979 CEQVNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGH 1038
CE+ NLVLNWEKCHFMV+EGIVLGH + RGIEV + K+++I K+ PP +VK I SFLGH
Sbjct: 541 CEKSNLVLNWEKCHFMVQEGIVLGHKISKRGIEVVKEKLDVIDKLPPPVNVKGIHSFLGH 720
Query: 1039 AGFYRRFIKDFSSI 1052
GFYRRFIKDF+ +
Sbjct: 721 VGFYRRFIKDFTKV 762
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 396 bits (1017), Expect = e-110
Identities = 307/974 (31%), Positives = 467/974 (47%), Gaps = 18/974 (1%)
Frame = +1
Query: 670 EGEAKAYEELLDRTLPMKGL-SVEELVKEEPTLLPKEAPKVELKTLPSNLRYEFLGPNST 728
EG ++A + L ++ S+EE + L+ KE P+ LK LP+N+ E T
Sbjct: 1531 EGNSEATQAQLHHFRRLQNTKSIEECFAIQ--LIQKEVPEDTLKDLPTNIDPELAILLHT 1704
Query: 729 YPVI--VNASLDEVETEKLLYVLKKYPKAIGYTIDDIKGINPSLCMHRILLEEDYKPSIE 786
Y + V ASL + H I L++ P
Sbjct: 1705 YAQVFAVPASLPPQREQD----------------------------HAIPLKQGSGPVKV 1800
Query: 787 HQRRLNPNMKEVVKKEVLKLLDAGVIYPISDSKWVSPVQVVPKKGGLTVIKNDKNESIAT 846
R K+ ++K + ++L G+I P S+S + P+ +V KK G
Sbjct: 1801 RPYRYPHTQKDQIEKMIQEMLVQGIIQP-SNSPFSLPILLVKKKDG-------------- 1935
Query: 847 RTVTGWRMCIDYRKLNKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPND 906
WR C DYR LN T KD FP+P +D++L+ L +F LD SG+ QI + P D
Sbjct: 1936 ----SWRFCTDYRALNAITVKDSFPMPTVDELLDELHGAQYFSKLDLRSGYHQILVQPED 2103
Query: 907 QEKTTFTCPFGTFAYRRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFD 966
+EKT F G + + MPFGL NAPATFQ M IF + K + VF DD ++ +++
Sbjct: 2104 REKTAFRTHHGHYEWLVMPFGLTNAPATFQCLMNKIFQFALRKFVLVFFDDILIYSASWK 2283
Query: 967 DCLTNLEKVLERCEQVNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPP 1026
D L +LE VL+ +Q L KC F E LGH V G+ ++ K++ + P
Sbjct: 2284 DHLKHLESVLQTLKQHQLFARLSKCSFGDTEVDYLGHKVSGLGVSMENTKVQAVLDWPTP 2463
Query: 1027 TSVKEIRSFLGHAGFYRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITA 1086
+VK++R FLG G+YRRFIK +++I PLT LL KD+ F +++ AF +LK+A+ A
Sbjct: 2464 NNVKQLRGFLGLTGYYRRFIKSYANIAGPLTDLLQKDS-FLWNNEAEAAFVKLKKAMTEA 2640
Query: 1087 PIIQPPDWNLPFEIMCDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELL 1146
P++ PD++ PF + DAS VGAVLGQ H I Y SK L + +ELL
Sbjct: 2641 PVLSLPDFSQPFILETDASGIGVGAVLGQNG----HPIAYFSKKLAPRMQKQSAYTRELL 2808
Query: 1147 AVVYAIDKFRQYLVGSKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGV 1206
A+ A+ KFR YL+G+K I+ TD ++K L+++ P W+ +D +I+ K G
Sbjct: 2809 AITEALSKFRHYLLGNKFIIRTDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIEYKPGK 2988
Query: 1207 ENVVADHLSRLRETNKDELPLDDSFPDDQLFLLAQTDAPWYADFVNFLAAGVL--PPELN 1264
+N AD LSR +F+LA ++ ++ F+ L A ++ P
Sbjct: 2989 DNQAADALSR-------------------MFMLAWSEP--HSIFLEELRARLISDPHLKQ 3105
Query: 1265 YQQKKKFFNDLKHYYWDEPYLFRRGSDGIFRRCIPENE--VSSILTHCHSSSYGGHASTQ 1322
+ K D HY E L+ + R IP E V+ IL HSS GGHA
Sbjct: 3106 LMETYKQGADASHYTVREGLLYWKD-----RVVIPAEEEIVNKILQEYHSSPIGGHAGIT 3270
Query: 1323 KTSFKILHSGFWWPSLFKDVHLFISKCDKCQRTGSITKRNEMPLNNILEVEI-FDVW--- 1378
+T + L + F+WP + +DV +I KC CQ+ S N +P + + I VW
Sbjct: 3271 RTLAR-LKAQFYWPKMQEDVKAYIQKCLICQQAKS---NNTLPAGLLQPLPIPQQVWEDV 3438
Query: 1379 GIDFMGPFPSSFGNQYILVAVDYVSKWVEAIASPTN-DAQVVIKMFKKVIFPRFGVPRVV 1437
+DF+ P+SFG I+V +D ++K+ I + +++VV + F I G+PR +
Sbjct: 3439 AMDFITGLPNSFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGIPRSI 3618
Query: 1438 ISDGGSHFISRHFEKLLQKLGVRHKIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDW 1497
+SD F S ++ L + G +++ YHPQ+ GQ EV N+ ++ L W
Sbjct: 3619 VSDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEHPKGW 3798
Query: 1498 SNKLDDALWAYRTAYKTPIGMTPFKLVYGKSCHLPVELEHKAYWAIRNLNLDPNLAGDKR 1557
L A + Y TAY +GMTPF+ +YG+ P L +A ++D +
Sbjct: 3799 VKALPWAEFWYNTAYHMSLGMTPFRALYGRE---PPTLTRQA------CSIDDPA---EV 3942
Query: 1558 KLQLNELEELRMDAYENARIYKERTKTWHDKKIIKRHFKSGDLVLL------FNSRLKLF 1611
+ QL + + L N ++ K DKK + F+ GD VL+ +S +
Sbjct: 3943 REQLTDRDALLAKLKINLTRAQQVMKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLRK 4122
Query: 1612 PGKLRSRWSGPFQV 1625
KL R+ GPF+V
Sbjct: 4123 NQKLSMRYFGPFKV 4164
>NP395548 reverse transcriptase [Glycine max]
Length = 762
Score = 383 bits (983), Expect = e-106
Identities = 177/254 (69%), Positives = 213/254 (83%)
Frame = +1
Query: 799 VKKEVLKLLDAGVIYPISDSKWVSPVQVVPKKGGLTVIKNDKNESIATRTVTGWRMCIDY 858
V+KEVLKLL+ G+IYPISDS WVSPV VV KK G+TVI+N+KN+ I TRTVT W++CIDY
Sbjct: 1 VRKEVLKLLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDY 180
Query: 859 RKLNKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGT 918
RKLN+ATRKDHFPLPF+DQMLERLA H+++C+LD Y G+ QI + P DQEK FTCPFG
Sbjct: 181 RKLNEATRKDHFPLPFMDQMLERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCPFGV 360
Query: 919 FAYRRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLER 978
FAYRR+PFGLCNAP TFQ CM++IF+D VEK +EVFMDDFSV + + CL LE VL+R
Sbjct: 361 FAYRRIPFGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKKLEMVLQR 540
Query: 979 CEQVNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGH 1038
C + NLVLNWEKCHFMVREGIVLGH + RGIEVD+ KI++I+K+ PP++VK IRSFLG
Sbjct: 541 CVETNLVLNWEKCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKGIRSFLGQ 720
Query: 1039 AGFYRRFIKDFSSI 1052
A FYRRFIKDF+ +
Sbjct: 721 ARFYRRFIKDFTKV 762
>BE802896
Length = 416
Score = 187 bits (474), Expect = 4e-47
Identities = 87/138 (63%), Positives = 108/138 (78%)
Frame = -2
Query: 1034 SFLGHAGFYRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPD 1093
SFLGHAGFYRRFI+DF + PL++LL K+ +F F+D C AF LK ALIT PIIQ PD
Sbjct: 415 SFLGHAGFYRRFIRDFRKVALPLSNLLQKEVEFDFNDKCK*AFDCLKRALITTPIIQAPD 236
Query: 1094 WNLPFEIMCDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAID 1153
W PFE+MCDAS+YA+G VL Q+ DK IYY+S+TLD AQ NY TTEKELLA+V+A++
Sbjct: 235 WTAPFELMCDASNYALGVVLAQKIDKLPRVIYYSSRTLDAAQANYTTTEKELLAIVFALE 56
Query: 1154 KFRQYLVGSKIIVYTDHS 1171
KF YL+G++IIVY DH+
Sbjct: 55 KFHSYLLGTRIIVYIDHA 2
>BE660092 weakly similar to GP|9884624|dbj retroelement pol polyprotein-like
{Arabidopsis thaliana}, partial (13%)
Length = 378
Score = 186 bits (472), Expect = 7e-47
Identities = 80/122 (65%), Positives = 106/122 (86%)
Frame = -3
Query: 1453 LLQKLGVRHKIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSNKLDDALWAYRTAY 1512
LL+K GV H+++TPYHPQT+GQ E+SNR+IK ILEK V SR DWS +LDDALWA+RTAY
Sbjct: 367 LLKKYGVVHRVSTPYHPQTNGQAEISNREIKRILEKIVQPSRKDWSTRLDDALWAHRTAY 188
Query: 1513 KTPIGMTPFKLVYGKSCHLPVELEHKAYWAIRNLNLDPNLAGDKRKLQLNELEELRMDAY 1572
K PIGM+P+++V+GK+CHLPVE+EHKAYWA++ N + AG++RKLQL+EL+E+R++AY
Sbjct: 187 KAPIGMSPYRVVFGKACHLPVEIEHKAYWAVKTCNFSMDQAGEERKLQLSELDEIRLEAY 8
Query: 1573 EN 1574
EN
Sbjct: 7 EN 2
>CF922488
Length = 741
Score = 182 bits (461), Expect = 1e-45
Identities = 97/236 (41%), Positives = 140/236 (59%)
Frame = +3
Query: 854 MCIDYRKLNKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFT 913
MC+DYR LN A+ KD FPLP I+ +++ S F ++DG+SG+ QI I P D EKTTF
Sbjct: 30 MCVDYRDLN*ASPKDKFPLPHINVLVDNTTSFSQFSFMDGFSGYNQIKIAPEDMEKTTFI 209
Query: 914 CPFGTFAYRRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLE 973
+GTF Y+ M FGL N AT+QR M+++F D + K +EV+MDD V ++ L NL
Sbjct: 210 TLWGTFCYKAMSFGLKNVGATYQRAMVALF*DMMHKEIEVYMDDMIVKSRTEEEHLVNLR 389
Query: 974 KVLERCEQVNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIR 1033
K+ R + L LN KC F V+ +L + RGIEVD K+++I +M P + K+++
Sbjct: 390 KLFRRLRKYRLRLNPAKCMFEVKSRKLLDFIDS*RGIEVDSNKVKVILEMAKPHTEKQVQ 569
Query: 1034 SFLGHAGFYRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPII 1089
FLG + RFI + +PL LL K+ +D C AF R+K+ LI ++
Sbjct: 570 GFLGRLNYIVRFIS*LIATCEPLFILLCKNQFVKWDHDC*VAFERIKQCLINPHVL 737
>BE801213 weakly similar to GP|6691193|gb| F7F22.17 {Arabidopsis thaliana},
partial (3%)
Length = 416
Score = 105 bits (262), Expect(2) = 2e-42
Identities = 45/64 (70%), Positives = 57/64 (88%)
Frame = +2
Query: 1487 EKTVSTSRTDWSNKLDDALWAYRTAYKTPIGMTPFKLVYGKSCHLPVELEHKAYWAIRNL 1546
EK V++SR DWS+KL+DALWA +TA KTPIG+TPF++VY K+CHLPVEL+HKAYWA++ L
Sbjct: 224 EKNVASSRKDWSSKLEDALWACKTAKKTPIGLTPFQMVYRKACHLPVELKHKAYWAMKCL 403
Query: 1547 NLDP 1550
N DP
Sbjct: 404 NFDP 415
Score = 87.8 bits (216), Expect(2) = 2e-42
Identities = 40/66 (60%), Positives = 50/66 (75%)
Frame = +3
Query: 1414 NDAQVVIKMFKKVIFPRFGVPRVVISDGGSHFISRHFEKLLQKLGVRHKIATPYHPQTSG 1473
NDA++VIK KK IF RFG+PR++ISDGGSHF K+L+ VRHK+ T YHPQT+G
Sbjct: 3 NDAKIVIKFLKKNIFSRFGMPRILISDGGSHFYYSQLNKVLKHDSVRHKVETSYHPQTNG 182
Query: 1474 QVEVSN 1479
Q +VSN
Sbjct: 183 QAKVSN 200
>BI321666
Length = 430
Score = 165 bits (418), Expect = 1e-40
Identities = 78/134 (58%), Positives = 100/134 (74%), Gaps = 4/134 (2%)
Frame = +2
Query: 1325 SFKILHSGFWWPSLFKDVHLFISKCDKCQRTGSITKRNEMPLNNILEVEIFDVWGIDFMG 1384
S +L S F+ PS+FKD ++ C+KCQRT S++KRNE+PL+ ILEVEIFD WGIDF+G
Sbjct: 5 STNVLQSRFYLPSIFKDAYVHAQSCNKCQRTRSVSKRNELPLHTILEVEIFDYWGIDFVG 184
Query: 1385 PFPSSFGNQYILVAVDYVSKWVEAIASPTNDAQVVIKMFKKVIFPRFGVPRVVISDGGSH 1444
PFP SF N+YILV VDYVSKWVEA+A +DA++VIK KK IF R GVP V+I +GGSH
Sbjct: 185 PFPPSFSNEYILVVVDYVSKWVEAVACQKSDAKIVIKFLKKQIFSRLGVPWVLIDNGGSH 364
Query: 1445 F----ISRHFEKLL 1454
++R F ++
Sbjct: 365 LCNA*LARFFNTIM 406
>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
Length = 843
Score = 135 bits (341), Expect = 1e-31
Identities = 71/236 (30%), Positives = 123/236 (52%), Gaps = 2/236 (0%)
Frame = +1
Query: 1245 PWYADFVNFLAAGVLPPELNYQQKKKFFNDLKHYYWDEPYLFRRGSDGIFRRCIPENEVS 1304
PWY D ++ + PE+ K+ ++ L++R D RC+ E +
Sbjct: 136 PWYFDIKRYVISKEYLPEIADNDKRTLRRLAAGFFMSGSILYKRNHDMKPLRCVDAREAN 315
Query: 1305 SILTHCHSSSYGGHASTQKTSFKILHSGFWWPSLFKDVHLFISKCDKCQRTGSITKRNEM 1364
++ H S+G HA+ + KIL +G++W ++ D + + KC KCQ
Sbjct: 316 HMIEEVHEGSFGTHANGHAMARKILRAGYYWLTMESDCCVHVRKCHKCQAFADNVNAPPH 495
Query: 1365 PLNNILEVEIFDVWGIDFMGPF--PSSFGNQYILVAVDYVSKWVEAIASPTNDAQVVIKM 1422
PLN + F +WGID +G +S G+++ILVA+DY +KWVEA + VV++
Sbjct: 496 PLNVMSSPWPFSMWGIDVIGAIEPKASNGHRFILVAIDYFTKWVEAASYTDVMRGVVVRF 675
Query: 1423 FKKVIFPRFGVPRVVISDGGSHFISRHFEKLLQKLGVRHKIATPYHPQTSGQVEVS 1478
KK I R+G+PR +I+D G++ ++ ++ ++ ++H TPY P+ + VEV+
Sbjct: 676 IKKEIICRYGLPRKIITDNGTNLNNKMMGEICEEFKIQHHNPTPYRPKMN*AVEVA 843
>TC232867 similar to UP|Q9MA68 (Q9MA68) F2J6.13 protein, partial (3%)
Length = 1144
Score = 134 bits (336), Expect = 4e-31
Identities = 90/276 (32%), Positives = 145/276 (51%), Gaps = 7/276 (2%)
Frame = -3
Query: 1 MAEER---TLKEYSIPSSDEPCTIIVYPTVQGSNFKIKPALLILVQQNQFSGSPSEDPNL 57
MAEE L++YS + + T I P VQ P+L+ L+Q N F G P+EDP
Sbjct: 929 MAEEPRRVALEDYSSSTVPQFFTSIAQPEVQAQTITYPPSLIQLIQSNFFHGLPNEDPYA 750
Query: 58 HISTFWRLSVTCK---DDQETVRLYLFPFSLKDKASNWFNSLKPGSITSWDQLRREFLCR 114
H++T+ + T + + +RL L FSL +A W +S K S+ SWD++ +FL +
Sbjct: 749 HLATYIEICNTIRLAGVPADAIRLSLLSFSLSGEAKRWLHSFKGNSLKSWDEVVEKFLKK 570
Query: 115 FFPPSKTAQLRGKLYQFTQKNEESLFDVWEHFKEILRRCPHHGLEKWLIIHTFYNGLTSS 174
+FP SKTA+ + + F Q +ESL + E F+ +LR+ P HG + + ++ F + L
Sbjct: 569 YFPESKTAEGKAAISSFHQFPDESLSEALERFRGLLRKTPTHGFSEPIQLNIFIDELRPE 390
Query: 175 TKLTVDTAAGGALMNKDFTTAYALIENMALNLFQWTEEKATIDPSPSKKEAGMDETSSID 234
+K VD + GG + K A LIE+MA + ++A I P+KK + E +S D
Sbjct: 389 SKQLVDASVGGKIKMKTPDEAMDLIESMAASDIAILRDRAHI---PTKK--SLLELTSQD 225
Query: 235 YLSTKVNALSQRLDRMSTPTFSPPCETCDL-SSHSN 269
L + LS++L+ ++ P + +SHS+
Sbjct: 224 TLLAQNKLLSKQLETLTKTLSKLPTQLHSAQTSHSS 117
>TC234722 similar to UP|Q6WAY9 (Q6WAY9) Pol (Fragment), partial (32%)
Length = 482
Score = 128 bits (322), Expect = 2e-29
Identities = 55/78 (70%), Positives = 68/78 (86%)
Frame = -3
Query: 1467 YHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSNKLDDALWAYRTAYKTPIGMTPFKLVYG 1526
YHPQT+GQ EVSN++IK +LE V +SR DW+ KLDDA WAYR A+KTPIG++PF+LVYG
Sbjct: 234 YHPQTNGQAEVSNKEIKRVLENIVVSSRKDWALKLDDAFWAYRIAFKTPIGLSPFQLVYG 55
Query: 1527 KSCHLPVELEHKAYWAIR 1544
K+CHL VELEHKAYWA++
Sbjct: 54 KACHLSVELEHKAYWALK 1
>NP334778 reverse transcriptase [Glycine max]
Length = 431
Score = 124 bits (311), Expect = 3e-28
Identities = 59/141 (41%), Positives = 89/141 (62%)
Frame = +3
Query: 853 RMCIDYRKLNKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTF 912
RMC+DYR LN+A+ KD+FPLP ID ++ +A + F ++DG+SG+ QI + P D EKTTF
Sbjct: 3 RMCVDYRDLNRASPKDNFPLPHIDILMANMASFALFSFMDGFSGYNQIKMAPEDMEKTTF 182
Query: 913 TCPFGTFAYRRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNL 972
+GTF Y+ M FGL N AT+ R M+++F D + K +E ++D+ ++ L NL
Sbjct: 183 ITLWGTFCYKVMSFGLKNFGATYHRAMVALFQDMMHKEIEAYVDEMIAKSRMEEEHLVNL 362
Query: 973 EKVLERCEQVNLVLNWEKCHF 993
+ + + + L LN KC F
Sbjct: 363 QNLFGQLRKYRLRLNPRKCVF 425
>TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)
Length = 589
Score = 124 bits (311), Expect = 3e-28
Identities = 66/163 (40%), Positives = 97/163 (59%)
Frame = +1
Query: 1028 SVKEIRSFLGHAGFYRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAP 1087
SV +IRSF G A FYRRF+ +FS++ PL L+ K+ FT+ + QAF LKE L AP
Sbjct: 109 SVGDIRSFHGLASFYRRFVPNFSTVASPLNELVKKNMAFTWGEKQEQAFALLKEKLTKAP 288
Query: 1088 IIQPPDWNLPFEIMCDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLA 1147
++ PD++ FE+ CDAS V AVL Q H I Y S+ L A +NY T +KEL A
Sbjct: 289 VLALPDFSKTFELECDASGVGVRAVLLQGG----HPIAYFSEKLHSATLNYPTYDKELYA 456
Query: 1148 VVYAIDKFRQYLVGSKIIVYTDHSAIKYLLNKKDAKPRLIRWI 1190
++ A + +LV + ++++DH ++KY+ K R +W+
Sbjct: 457 LIRAPQTWEHFLVCKEFVIHSDHQSLKYIRGKSKLNKRHAKWV 585
>TC232398
Length = 1054
Score = 82.4 bits (202), Expect(2) = 8e-28
Identities = 38/91 (41%), Positives = 61/91 (66%)
Frame = +1
Query: 531 RLGIGELKSTRMTLQLADRSVKYPAGIIEDVPVKVGEVYIPADFVVMEMEEDNQVPILLG 590
R+G +++ TRMTLQLAD S+ G++ED+ VKV ++ DFV+M++EED ++ ++LG
Sbjct: 175 RIGNQKIEPTRMTLQLADHSITRSFGVVEDILVKVHQLIFLVDFVIMDIEEDAEIRLILG 354
Query: 591 RPFLATAGAIIDVKKGKLAFNVGKETVEFEL 621
PF+ TA ++D+ KG L +V + F L
Sbjct: 355 WPFMVTAKCVVDMGKGNLEMSVEDQKATFNL 447
Score = 61.6 bits (148), Expect(2) = 8e-28
Identities = 33/57 (57%), Positives = 39/57 (67%)
Frame = +2
Query: 441 IDVPFTEVLTQMPTYAKFLKEILSKKRKIEESETVNLTEECSAIIQNKLPPKLKDPG 497
I +PF E + QMP Y KFLK+IL KK K SET+ + E C A+IQ KLPPK KD G
Sbjct: 8 ITIPFGERIQQMPLYKKFLKDILIKKGKYINSETIVVGEYCRALIQ-KLPPKFKDLG 175
>TC231258 similar to UP|Q886T6 (Q886T6) Sensory box histidine kinase/response
regulator, partial (3%)
Length = 1374
Score = 122 bits (307), Expect = 1e-27
Identities = 81/243 (33%), Positives = 122/243 (49%), Gaps = 3/243 (1%)
Frame = +2
Query: 4 ERTLKEYSIPSSDEPCTIIVYPTVQGSNFKIKPALLILVQQNQFSGSPSEDPNLHISTFW 63
ERTL+E P YP + + +K L+ L+ + F G EDP+ H+ F
Sbjct: 434 ERTLREMVAPDFTYESLCNQYPD-EDVPYVLKTGLIHLLPK--FHGLVGEDPHKHLKEFH 604
Query: 64 RLSVTCKD---DQETVRLYLFPFSLKDKASNWFNSLKPGSITSWDQLRREFLCRFFPPSK 120
+ T K ++ + L FP SL+ A +W L P SI +WD L+R FL +FFP S+
Sbjct: 605 IVCSTMKPPDVQEDHIFLKAFPHSLEGVAKDWLYYLAPRSIFNWDDLKRVFLEKFFPASR 784
Query: 121 TAQLRGKLYQFTQKNEESLFDVWEHFKEILRRCPHHGLEKWLIIHTFYNGLTSSTKLTVD 180
T +R + Q + ESL++ WE FK+ CPHH + K L++ FY L++ + +D
Sbjct: 785 TTTIRKDISGIRQLSRESLYEYWERFKKSCASCPHHQISKQLLL*YFYEELSNMKRSMID 964
Query: 181 TAAGGALMNKDFTTAYALIENMALNLFQWTEEKATIDPSPSKKEAGMDETSSIDYLSTKV 240
A+GGAL + T A LI+ MA N Q++ I E D +SS + S +
Sbjct: 965 AASGGALGDMTPTEARNLIKKMASNSQQFSARNDAI-VLRGVHEVATDSSSSTENKSLRE 1141
Query: 241 NAL 243
N +
Sbjct: 1142NLM 1150
>TC222094
Length = 984
Score = 84.3 bits (207), Expect(2) = 2e-25
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 3/127 (2%)
Frame = -2
Query: 3 EERTLKEYSIPSSDEPCTIIVYPTVQGSNFKIKPALLILVQQNQFSGSPSEDPNLHISTF 62
+ TL++YS P + T I P VQ +NF +L+ L+Q N F G P+EDP H++T+
Sbjct: 854 QRMTLEDYSSPIIPQYFTSIARPEVQTANFSYPYSLIQLIQGNLFYGLPTEDPYAHLATY 675
Query: 63 WRLSVTCK---DDQETVRLYLFPFSLKDKASNWFNSLKPGSITSWDQLRREFLCRFFPPS 119
+ T K ++ + L LF FSL +A W S K ++ +W++ +FL ++FP S
Sbjct: 674 IDICNTVKIVGVPEDAIHLDLFCFSLAGEARTWLRSFKGNNLRTWNEXXEKFLKKYFPES 495
Query: 120 KTAQLRG 126
KT +G
Sbjct: 494 KTIXXKG 474
Score = 51.6 bits (122), Expect(2) = 2e-25
Identities = 30/103 (29%), Positives = 54/103 (52%)
Frame = -3
Query: 127 KLYQFTQKNEESLFDVWEHFKEILRRCPHHGLEKWLIIHTFYNGLTSSTKLTVDTAAGGA 186
++ F Q ESL + + F +L + P HG + + ++ F +G+ +K +D +AGG
Sbjct: 472 EISSFHQHPHESLSEALDRFHGLLWKTPTHGFSEPVQLNIFIDGMQPHSKQLLDASAGGK 293
Query: 187 LMNKDFTTAYALIENMALNLFQWTEEKATIDPSPSKKEAGMDE 229
+ K A LIENMA N + ++ +PSP ++ ++E
Sbjct: 292 IKLKTPEEAIELIENMAANDYVILRDQ---EPSPQEESTRLEE 173
>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 402
Score = 109 bits (272), Expect = 1e-23
Identities = 56/133 (42%), Positives = 83/133 (62%)
Frame = +2
Query: 888 FCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAYRRMPFGLCNAPATFQRCMMSIFSDFV 947
F ++DG+SG+ QI + D EKTTF +GTF+YR M FGL N AT+QR M+++F D +
Sbjct: 2 FSFMDGFSGYNQI*MAREDVEKTTFVTLWGTFSYRVMAFGLKNTGATYQRAMVALFHDMM 181
Query: 948 EKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQVNLVLNWEKCHFMVREGIVLGHLVFD 1007
K +EV++DD + L NL K+ R ++ L LN KC F V+ G +LG +V
Sbjct: 182 HKEIEVYVDDMIAKSRTETEHLVNLCKLFGRLQKYQLKLNPTKCTFGVKSGKLLGFIVSQ 361
Query: 1008 RGIEVDRAKIEII 1020
+GIE+D K++ +
Sbjct: 362 KGIEIDPEKVKAL 400
>BQ133845
Length = 389
Score = 101 bits (252), Expect = 2e-21
Identities = 50/116 (43%), Positives = 74/116 (63%)
Frame = +2
Query: 413 KIPFPQRFAKSKLDEQFKKFIEMMNKIYIDVPFTEVLTQMPTYAKFLKEILSKKRKIEES 472
++P+P + ++ KF+++ K+ I +PF E L QMP YA FLK++L+KK S
Sbjct: 32 EVPYPLVPS*KDKEQHLAKFLDIFKKLEITLPFEEALQQMPLYANFLKDMLTKKNWYIHS 211
Query: 473 ETVNLTEECSAIIQNKLPPKLKDPGSFSIPCVIGSEVVKKAMCDLGASVSLMPLSL 528
+ + + CSA+IQ LPP DPG ++PC IG V KA+ DLGAS++LMPLS+
Sbjct: 212 DKIVVEGNCSAVIQRILPP*HTDPGFVTMPCSIGEVAVGKALIDLGASINLMPLSM 379
>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 669
Score = 96.7 bits (239), Expect = 8e-20
Identities = 59/160 (36%), Positives = 85/160 (52%), Gaps = 1/160 (0%)
Frame = +1
Query: 1476 EVSNRQIKAILEKTVSTSRTDWSNKLDDALWAYRTAYKTPIGMTPFKLVYGKSCHLPVEL 1535
E +N+ IK I++K ++ S DW L AL YRT+ +T G TPF LVYG LP E+
Sbjct: 1 EAANKNIKKIIQK-MTVSYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPFEV 177
Query: 1536 EHKAYWAIRNLNLDPNLAGDKRKLQLNELEELRMDAYENARIYKERTKTWHDKKIIKRHF 1595
E + + L + R QLN +E R+ A + R+Y++R K+ DKK+ R F
Sbjct: 178 EVPSLRILAESGLKESEWAQTRYDQLNLIEGKRLTAMSHGRLYQQRMKSAFDKKVCLRKF 357
Query: 1596 KSGDLVL-LFNSRLKLFPGKLRSRWSGPFQVRTVYPYGAI 1634
GDLVL + +K GK + GPF V+ + GA+
Sbjct: 358 HEGDLVLKKMSHAVKDHRGKWAPNYEGPFVVKRAFSGGAL 477
>AW570005
Length = 413
Score = 87.0 bits (214), Expect = 6e-17
Identities = 51/141 (36%), Positives = 75/141 (53%)
Frame = -2
Query: 1025 PPTSVKEIRSFLGHAGFYRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALI 1084
PP + + +R FL GFYRRFIK ++++ PL+ LL KD+ F + AF LK +
Sbjct: 409 PPRTARSLRGFLRLTGFYRRFIKGYAAMAAPLSHLLTKDS-FVWSPEADVAFQALKNVVT 233
Query: 1085 TAPIIQPPDWNLPFEIMCDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKE 1144
++ PD+ PF + DAS +GAVL Q H I + SK V +T E
Sbjct: 232 NTLVLALPDFTKPFTVETDASGSDMGAVLSQEG----HPIAFFSKEFCPKLVRSSTYVHE 65
Query: 1145 LLAVVYAIDKFRQYLVGSKII 1165
L A+ + K+RQYL+G ++
Sbjct: 64 LAAITNVVKKWRQYLLGHHLV 2
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.137 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,254,349
Number of Sequences: 63676
Number of extensions: 1098287
Number of successful extensions: 5559
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 5432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5527
length of query: 1672
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1562
effective length of database: 5,635,272
effective search space: 8802294864
effective search space used: 8802294864
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Medicago: description of AC146683.16