TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146683.12 - phase: 0 
         (480 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete             127  1e-29
NP004897 gag-protease polyprotein                                     125  4e-29
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co...   121  8e-28
CF920770                                                              106  3e-23
TC223814                                                               58  1e-08
TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%)       50  2e-06
CF922226                                                               45  7e-05
TC218782 similar to UP|Q41042 (Q41042) Pisum sativum L. (clone n...    37  2e-04
TC215289 weakly similar to UP|Q9SJB0 (Q9SJB0) Expressed protein,...    38  0.009
TC206178 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, part...    35  0.057
TC205401 similar to GB|AAP37850.1|30725656|BT008491 At4g26630 {A...    35  0.057
TC220457 similar to UP|O24293 (O24293) Chloroplast inner envelop...    35  0.074
TC217412 similar to UP|Q6L724 (Q6L724) ATP-dependent RNA helicas...    35  0.074
TC227390 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacety...    35  0.097
TC232022 homologue to UP|Q9LU46 (Q9LU46) DEAD-box protein abstra...    34  0.13
TC217411 similar to UP|Q8L7S8 (Q8L7S8) At5g26740, partial (26%)        34  0.13
TC219583 weakly similar to UP|GRP2_NICSY (P27484) Glycine-rich p...    33  0.22
BU964576                                                               33  0.37
TC226613 similar to UP|Q8H0V8 (Q8H0V8) Spliceosome associated pr...    32  0.48
TC219413 similar to UP|Q97LA8 (Q97LA8) Sensory transduction hist...    32  0.48

>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
          Length = 4731

 Score =  127 bits (319), Expect = 1e-29
 Identities = 121/461 (26%), Positives = 200/461 (43%), Gaps = 31/461 (6%)
 Frame = +1

Query: 37  DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 91
           D   + +WK  M +F+  LD   W  +  G +    LD EG   D        T  + +L
Sbjct: 49  DGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDEL 228

Query: 92  YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 151
              + K    +   + +  +  ++  + AK  +  L    EG+ KVK ++  +L  ++E 
Sbjct: 229 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFEN 408

Query: 152 FRMKDDGSIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
            +MK++  I + +     + +    L +       V KILRSLP R+  KVTAIEEA+D+
Sbjct: 409 LKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDI 588

Query: 212 NTLSVEDLVSSLKGHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 271
             + V++L+ SL+  E+ L++    KKSK++A  S              E EE+  D D+
Sbjct: 589 CNMRVDELIGSLQTFELGLSD-RAEKKSKNLAFVSN------------DEGEEDEYDLDT 729

Query: 272 DEDQSVKMAMLSNK----LEYLARKQKKFLSK-----RGSYKNSKKEDQK-------GCF 315
           DE  +  + +L  +    L  + ++QK  +       R   K  K+ D K        C 
Sbjct: 730 DEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGIQCH 909

Query: 316 NCKKPGHFIADCPDLQKEKYKGKSKKSSFSSSKFRKQIKK---SLMATWEDLDSESGSDK 372
            C+  GH IA+CP   K+  KG S   S + S+      +   +L   +E  +  S +D 
Sbjct: 910 GCEGYGHIIAECPTHLKKHRKGLSVCQSDTESEQESDSDRDVNALTGIFETAEDSSDTDS 1089

Query: 373 EEADDDAKAAMRLVATVSSEAVSEAE-------SDSEDENEVYSKIPRQELVDSLKELLS 425
           E   D+  A+ R +  + SE + + E       +D E E E + K    EL   +  L S
Sbjct: 1090EITFDELAASYRKLC-IKSEKILQQEAQLKKVIADLEAEKEAH-KEEISELKGEVGFLNS 1263

Query: 426 LFEHRTNELTDLKEKYVDLMKQQKTTLLELKASEEELKGFN 466
             E+ T  +  L +    L    +  LL   A  +   GFN
Sbjct: 1264KLENMTKSIKMLNKGSDTL---DEVLLLGKNAGNQRGLGFN 1377


>NP004897 gag-protease polyprotein
          Length = 1923

 Score =  125 bits (314), Expect = 4e-29
 Identities = 117/450 (26%), Positives = 195/450 (43%), Gaps = 22/450 (4%)
 Frame = +1

Query: 37  DPEEFSWWKTNMYSFIMGLDEELWD-ILEDGVDDLDLDEEGAAID----RRIHTPAQKKL 91
           D   + +WK  M +F+  LD   W  +++D      LD EG   D        T  + +L
Sbjct: 49  DGTNYEYWKARMVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDGLKPEEDWTKEEDEL 228

Query: 92  YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 151
              + K    +   + +  +  ++  + AK  +  L    EG+ KVK ++  +L  ++E 
Sbjct: 229 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFEN 408

Query: 152 FRMKDDGSIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
            +MK++  I + +     + +    L +       V KILRSLP R+  KVTAIEEA+D+
Sbjct: 409 LKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDI 588

Query: 212 NTLSVEDLVSSLKGHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 271
             L V++L+ SL+  E+ L++  T KKSK++A  S              E EE+  D D+
Sbjct: 589 CNLRVDELIGSLQTFELGLSD-RTEKKSKNLAFVSN------------DEGEEDEYDLDT 729

Query: 272 DEDQSVKMAMLSNK----LEYLARKQK------KFLSKRGSYKNSKKEDQK-------GC 314
           DE  +  + +L  +    L  + R+QK       F  ++GS +  K+ D+K        C
Sbjct: 730 DEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGS-EYQKRSDEKPSHSKGFQC 906

Query: 315 FNCKKPGHFIADCPDLQKEKYKGKSKKSSFSSSKFRKQIKKSLMATWEDLDSESGSDKEE 374
             C+  GH  A+CP   K++ KG S   S                  +D +SE  SD + 
Sbjct: 907 HGCEGYGHIKAECPTHLKKQRKGLSVCRS------------------DDTESEQESDSDR 1032

Query: 375 ADDDAKAAMRLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNEL 434
                             A++     +ED ++  S+I   EL  S +EL    E    + 
Sbjct: 1033---------------DVNALTGRFESAEDSSDTDSEITFDELATSYRELCIKSEKILQQE 1167

Query: 435 TDLKEKYVDLMKQQKTTLLELKASEEELKG 464
             LK+   +L  +++    E+     ELKG
Sbjct: 1168AQLKKVIANLEAEKEAHEEEI----SELKG 1245


>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
          Length = 4734

 Score =  121 bits (303), Expect = 8e-28
 Identities = 107/426 (25%), Positives = 186/426 (43%), Gaps = 27/426 (6%)
 Frame = +1

Query: 37  DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 91
           D   + +WK  M +F+  LD   W  +  G +    LD EG   +        T  + +L
Sbjct: 49  DGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDEL 228

Query: 92  YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 151
              + K    +   + +  +  ++  + AK  +  L    EG+ KVK ++  +L  ++E 
Sbjct: 229 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFEN 408

Query: 152 FRMKDDGSIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
            +MK++  I + +     + +    L +       V KILRSLP R+  KVTAIEEA+D+
Sbjct: 409 LKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDI 588

Query: 212 NTLSVEDLVSSLKGHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 271
             + V++L+ SL+  E+ L++  T KKSK++A  S              E EE+  D D+
Sbjct: 589 CNMRVDELIGSLQTFELGLSD-RTEKKSKNLAFVSN------------DEGEEDEYDLDT 729

Query: 272 DEDQSVKMAMLSNK----LEYLARKQK------KFLSKRGSYKNSKKEDQK-------GC 314
           DE  +  + +L  +    L  + R+QK       F  ++GS +  KK D+K        C
Sbjct: 730 DEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGS-EYQKKSDEKPSHSKGIQC 906

Query: 315 FNCKKPGHFIADCPDLQKEKYKG----KSKKSSFSSSKFRKQIKKSLMATWEDLDSESGS 370
             C+  GH  A+CP   K++ KG    +S  +         +   +L   +E  +  S +
Sbjct: 907 HGCEGYGHIKAECPTHLKKQRKGLSVCRSDDTESEQESDSDRDVNALTGRFESAEDSSDT 1086

Query: 371 DKEEADDDAKAAMRLVATVSSEAV-SEAESDSEDENEVYSKIPRQELVDSLKELLSLFEH 429
           D E   D+   + R +   S + +  EA+      N    K   +E +  LK  +     
Sbjct: 1087DSEITFDELAISYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEEISELKGEVGFLNS 1266

Query: 430 RTNELT 435
           +   +T
Sbjct: 1267KLENMT 1284


>CF920770 
          Length = 581

 Score =  106 bits (264), Expect = 3e-23
 Identities = 61/187 (32%), Positives = 102/187 (53%), Gaps = 12/187 (6%)
 Frame = -2

Query: 56  DEELWDILEDG------VDDLDLDEEGAAIDRRIHTPAQK------KLYKKHHKIRGIIV 103
           D  +W+ +E G      V+ + +D   ++    I  P  +      K  + + K + II 
Sbjct: 574 DLNIWEAIEIGPYIPTTVERVSIDGSSSSESITIEKPRDRWSEEDRKRVQYNLKAKNIIT 395

Query: 104 ASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDGSIEEM 163
           +++   EY ++S+  +AK M+ +L    EG+  VK ++   L H+YELFRM  + +I+ M
Sbjct: 394 SALGMDEYFRVSNCKSAKEMWDTLRLTHEGTTDVKRSRINALTHEYELFRMNTNENIQSM 215

Query: 164 YSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSL 223
             RF  +V+ L  L K +   D ++K+LR L   W+PKVTAI E++DL+ +S+  L   L
Sbjct: 214 QKRFTHIVNHLAALGKEFQNEDLINKVLRCLSREWQPKVTAISESRDLSNMSLATLFGKL 35

Query: 224 KGHEMSL 230
           + HEM L
Sbjct: 34  QEHEMEL 14


>TC223814 
          Length = 607

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 40/101 (39%), Positives = 59/101 (57%), Gaps = 1/101 (0%)
 Frame = +1

Query: 165 SRFQTLVSGLQILKKS-YVASDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSL 223
           S+ Q +++ L+ L K+     DH++KIL+SL  + RP V A+ ++KDL +L VE+   +L
Sbjct: 223 SKVQNIMNNLRSLSKT*DNHDDHITKILQSLLIQ*RP*VIALCDSKDLKSLPVEEFDGTL 402

Query: 224 KGHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEE 264
           + HE+ L E E  +K K IA       SK  KA K S S E
Sbjct: 403 QVHELELMEDEGQRKGKFIA-------SKVQKALKRSLSRE 504


>TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%)
          Length = 1005

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 58/258 (22%), Positives = 97/258 (37%), Gaps = 2/258 (0%)
 Frame = +3

Query: 225 GHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDEDQSVKMAMLSN 284
           G +    + +  K  K  A   KGK           + ++E  DGD +E +  K      
Sbjct: 216 GKDDEEKKEKKKKYDKIDAXKVKGKEDDGKDEGNKEKKDKEKGDGDGEEKKEKKDKEKEK 395

Query: 285 KLEYLAR-KQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADCPDLQKEKYKGKSKKSS 343
           K E   + ++   L ++G  KN + ED +G    KK           +KEK   K KK  
Sbjct: 396 KKEKKDKDEETDTLKEKG--KNDEGEDDEGNKKKKK--------DKKEKEKDHKKEKKDK 545

Query: 344 FSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMRLVATVSSEAVSEAESDSED 403
               K   +++ S+     D+D E    + E +D  K           E   + + + +D
Sbjct: 546 EEGEKEDSKVEVSV----RDIDIEEIKKEGEKEDKGKDG-------GKEVKEKKKKEDKD 692

Query: 404 ENEVYSKIPRQELVDSLKELLSLFEHRTNELTDLKEKYVDLMKQQKTTLLELKASEEELK 463
           + E   K+  ++    L  L    E    ++  L EK  D+ +Q K    E     EE K
Sbjct: 693 KKEKKKKVTGKDKTKDLSTLKQKLEKINGKIQPLLEKKADIERQIKEVEAEGHVVNEENK 872

Query: 464 GFNLIST-TYEDRLKILC 480
               ++    +D L + C
Sbjct: 873 N*GTVAVQDVQDTLILYC 926


>CF922226 
          Length = 667

 Score = 45.1 bits (105), Expect = 7e-05
 Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 1/193 (0%)
 Frame = -3

Query: 152 FRMKDDGSIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
           F+M +D S+ E    F  L+  L+ +  +    D    +L  LP  +      +   +D 
Sbjct: 614 FKMHEDRSVGEQLDLFNKLILDLENIDVTIDDEDQALLLLCYLPKSYSHFKETLLFGRD- 438

Query: 212 NTLSVEDLVSSLKGHEMSLNEHETSKKSKS-IALPSKGKTSKSSKAYKASESEEESPDGD 270
            ++S++++ ++L   E  LNE +  K S S   L ++GKT K                 D
Sbjct: 437 -SVSLDEVQTALNSKE--LNERKEKKSSASGEGLTARGKTFKK----------------D 315

Query: 271 SDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADCPDL 330
           S+ D+               +KQK    K G     K      C++CKK GH    CP+ 
Sbjct: 314 SEFDK---------------KKQKPENQKNGEGNIFKIR----CYHCKKEGHTRKVCPER 192

Query: 331 QKEKYKGKSKKSS 343
           QK       KK S
Sbjct: 191 QKNGGSNNRKKDS 153


>TC218782 similar to UP|Q41042 (Q41042) Pisum sativum L. (clone na-481-5),
           partial (20%)
          Length = 925

 Score = 36.6 bits (83), Expect = 0.025
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
 Frame = +1

Query: 178 KKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKGHEMSLNEHETSK 237
           KK   AS   S       S    +V   ++ K++     ++  SS    + S +E E  K
Sbjct: 52  KKGKAASSSSSSDSSEDDSSDEDEVATKKQTKEVKVQKGKEESSS----DDSSSESEDEK 219

Query: 238 KSKSIALPSKGKTSK----SSKAYK----ASESEEESPDGDSDEDQSVK 278
            +  +A+P K +++K    S+ A K    AS S  ES D DSDED++ K
Sbjct: 220 PAAKVAVPPKNQSAKNGTLSTPAEKGKPAASSSSSESSDDDSDEDEAPK 366



 Score = 32.7 bits (73), Expect(2) = 2e-04
 Identities = 20/59 (33%), Positives = 30/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 221 SSLKGHEMSLNEHETSKKSKSIALPSKGKT-SKSSKAYKASESEEESPDGDSDEDQSVK 278
           +S    E S ++ +  +  KS   P+ GK    S+K  + SES E   D  SDED++ K
Sbjct: 307 ASSSSSESSDDDSDEDEAPKSKVAPAAGKNVPASTKITQPSESSESDSDSSSDEDKNKK 483



 Score = 30.0 bits (66), Expect(2) = 2e-04
 Identities = 27/118 (22%), Positives = 43/118 (35%)
 Frame = +3

Query: 302 SYKNSKKEDQKGCFNCKKPGHFIADCPDLQKEKYKGKSKKSSFSSSKFRKQIKKSLMATW 361
           S+++ K  D +   +  +         D+ K     K K  S  S        K  M   
Sbjct: 525 SFESGKSSDDESSESSDEDNDAKPAVTDVSKPSALAKKKVDSSDSDDSSSDEDKGKM--- 695

Query: 362 EDLDSESGSDKEEADDDAKAAMRLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDS 419
            D+D +S  + EE            ++ SSE  SE ES+ E       +    E+VD+
Sbjct: 696 -DIDDDSSDESEEPQKKKTVKNPKESSDSSEEDSEDESEEEPSKTPQKRDRDVEMVDA 866


>TC215289 weakly similar to UP|Q9SJB0 (Q9SJB0) Expressed protein, partial
           (32%)
          Length = 1476

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
 Frame = +3

Query: 339 SKKSSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMRLVATVSSEAVSEAE 398
           S++SSF S  +       L+   ED D +   ++EE DD+ KA  R V + SS + S   
Sbjct: 900 SRRSSFYS--WSNPQSMPLLPVDEDQDYDYEEEEEEEDDEEKA--RKVPSASSSSSSSLA 1067

Query: 399 SDSEDENEVYSKIPR--QELVDSLKELLSLFEHRTNELTDLKE 439
            + + E++V  ++ R  +     ++  L  F+ R+  L DL+E
Sbjct: 1068EEKKQEDQVQLRLNRVPESYAAHMRLRLGSFKARSFSLADLQE 1196


>TC206178 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (69%)
          Length = 1138

 Score = 35.4 bits (80), Expect = 0.057
 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 8/45 (17%)
 Frame = +2

Query: 294 KKFLSKRGSYKNS--KKEDQKG------CFNCKKPGHFIADCPDL 330
           +K  S R SY+++  +++ ++G      C NCK+PGH+  +CP++
Sbjct: 260 RKIRSDRFSYRDAPYRRDSRRGFSRDNLCKNCKRPGHYARECPNV 394



 Score = 31.6 bits (70), Expect = 0.82
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 310 DQKGCFNCKKPGHFIADCPD 329
           ++K C NC+K GH   DCP+
Sbjct: 638 NEKACNNCRKTGHLARDCPN 697



 Score = 31.2 bits (69), Expect = 1.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 314 CFNCKKPGHFIADCPD 329
           C+NCK+PGH  + CP+
Sbjct: 458 CWNCKEPGHMASSCPN 505



 Score = 28.9 bits (63), Expect = 5.3
 Identities = 22/89 (24%), Positives = 33/89 (36%), Gaps = 8/89 (8%)
 Frame = +2

Query: 247 KGKTSKSSKAYKASESEEESPDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNS 306
           K K   SS +   S S   SP      D+ ++    S +     R  ++  S+    KN 
Sbjct: 191 KKKWKMSSDSRSRSRSRSRSP-----MDRKIRSDRFSYRDAPYRRDSRRGFSRDNLCKNC 355

Query: 307 KKEDQKG--------CFNCKKPGHFIADC 327
           K+             C NC  PGH  ++C
Sbjct: 356 KRPGHYARECPNVAICHNCGLPGHIASEC 442


>TC205401 similar to GB|AAP37850.1|30725656|BT008491 At4g26630 {Arabidopsis
           thaliana;} , partial (16%)
          Length = 912

 Score = 35.4 bits (80), Expect = 0.057
 Identities = 41/181 (22%), Positives = 71/181 (38%), Gaps = 20/181 (11%)
 Frame = +3

Query: 217 EDLVSSLKGHEMSLNEHETSKKSK--SIALPSKGKTSKSSKAYKASESEEESPDGDSDED 274
           ED+    K  + S  + E++KKSK   IA+P+K ++       K S +  +S   D D D
Sbjct: 36  EDIKEKKKHSKTSSTKKESAKKSKIEKIAVPNKSRSPPKRAPKKPSSNLSKS---DEDSD 206

Query: 275 QSVKMAMLSNKLEYLARKQKKFLSKRGSY---------KNSKKEDQKG---------CFN 316
           +S K+     K E   +++    +K  S          K  KKE  +          C  
Sbjct: 207 ESPKVFSRKKKNEKGGKQKTATPTKSASEEKTEKVTRGKGKKKEKSRPSDNQLRDAICEI 386

Query: 317 CKKPGHFIADCPDLQKEKYKGKSKKSSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEAD 376
            K+     A   D+ K+  K      +   +  +  I++ L    ++ D E   +  E D
Sbjct: 387 LKEVNFNTATFTDILKKLAKQFDMDLTPRKASIKSMIQEELTKLADEADDEDREEDAEKD 566

Query: 377 D 377
           +
Sbjct: 567 E 569


>TC220457 similar to UP|O24293 (O24293) Chloroplast inner envelope protein,
           110 kD (IEP110) precursor, partial (32%)
          Length = 1034

 Score = 35.0 bits (79), Expect = 0.074
 Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 9/145 (6%)
 Frame = +1

Query: 103 VASIPRTEYMKMSDKSTAKAMFASLCAN-FEGSKKVKEAKALMLVHQYELFRMKDDGSIE 161
           VA++ R   M    +   +A  + +C + FE  K VKEA A  +           DG   
Sbjct: 304 VAALLRMRVMLCIPQQIVEAAHSDICGSLFE--KVVKEAIASGV-----------DGYDA 444

Query: 162 EMYSRFQTLVSGLQILKK--SYVASDHVSKILRSLPSRWRPKVTAIEEAKDL------NT 213
           E+    +    GL++ ++    +AS  V KI  +   R R      E AK+L      NT
Sbjct: 445 EIQKSVRKAAHGLRLTREVAMSIASKAVRKIFINYIKRARAAGNRTESAKELKKMIAFNT 624

Query: 214 LSVEDLVSSLKGHEMSLNEHETSKK 238
           L V +LV  +KG    ++  E  K+
Sbjct: 625 LVVTNLVEDIKGESTDISSEEPVKE 699


>TC217412 similar to UP|Q6L724 (Q6L724) ATP-dependent RNA helicase, partial
           (3%)
          Length = 868

 Score = 35.0 bits (79), Expect = 0.074
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
 Frame = +3

Query: 248 GKTSKSSKAYKASESEEESPDGDSDEDQSVKMA----MLSNKLEYLARKQK--KFL---S 298
           G  S+  + +K+S   +    GD   DQS +         N     A K     +L    
Sbjct: 87  GSASRDRRGFKSSRGLDVEDSGDDFGDQSSRRGGRNFKTGNSWSRAAGKSSGDDWLIGGG 266

Query: 299 KRGSYKNSKKEDQKGCFNCKKPGHFIADCPDLQKEK 334
           +R S  +S       CFNC + GH  +DCP++   +
Sbjct: 267 RRSSRPSSSDRFGGTCFNCGESGHRASDCPNVSNRR 374


>TC227390 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
           HD2-P39, partial (24%)
          Length = 808

 Score = 34.7 bits (78), Expect = 0.097
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +1

Query: 328 PDLQKEKYK-GKSKKSSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMRLV 386
           P+ + E+ K  +SKK+   +S   KQ+K  ++   +D + +S  D +E DD         
Sbjct: 67  PETKAEELKVPESKKAVAKASASAKQVK--IVEPKKDNEEDSDDDSDEDDDFGS------ 222

Query: 387 ATVSSEAVSEAESDSEDENE 406
              S E + +A+SDS+DE++
Sbjct: 223 ---SDEEMEDADSDSDDESD 273


>TC232022 homologue to UP|Q9LU46 (Q9LU46) DEAD-box protein abstrakt, partial
           (39%)
          Length = 829

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 18/47 (38%), Positives = 25/47 (52%), Gaps = 2/47 (4%)
 Frame = +2

Query: 312 KGCFNCKKPGHFIADCPDLQKEKYK--GKSKKSSFSSSKFRKQIKKS 356
           KGC  C   GH I DCP L+ +K      ++K  F S  +R +I K+
Sbjct: 569 KGCAYCGGLGHRIRDCPKLEHQKSMAIANNRKDYFGSGGYRGEI*KA 709


>TC217411 similar to UP|Q8L7S8 (Q8L7S8) At5g26740, partial (26%)
          Length = 1275

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 15/187 (8%)
 Frame = +3

Query: 158 GSIEEMYSRFQTLVSGLQILKKSYVAS---DHVSKILRSLPSRWRPKVTAIEEAKDLNTL 214
           G + ++YS+    V  + ++    V     D   +I + L +R  P    I +   L  L
Sbjct: 303 GFLSDVYSQAADEVGKIHLIADERVQGAVFDLPEEIAKELLNRDIPPGNTISKITKLPPL 482

Query: 215 SVEDLVSSLKGH--EMSLNEHETSKKSKSIALPSKGKTSKSSKAYKAS-----ESEEESP 267
             +   S   G   +   +    S  S+       G +S+  + +K+S     E  ++  
Sbjct: 483 QDDGPPSDFYGRFSDRDRSSRRGSSTSRGGFSSRGGSSSRDRRGFKSSRGWDGEDSDDDD 662

Query: 268 DGDSDEDQSVKMAMLSNKLEYLARKQK--KFL---SKRGSYKNSKKEDQKGCFNCKKPGH 322
            GD    +  +     N     A +     +L   S+R S  +S       CFNC + GH
Sbjct: 663 FGDRSSWRGGRNFKTGNSWSRAAGRSSGDDWLIGGSRRSSRPSSSDRFGGACFNCGESGH 842

Query: 323 FIADCPD 329
             +DCP+
Sbjct: 843 RASDCPN 863


>TC219583 weakly similar to UP|GRP2_NICSY (P27484) Glycine-rich protein 2,
           partial (45%)
          Length = 995

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 313 GCFNCKKPGHFIADCPDLQK 332
           GCFNC + GHF  +CP++ K
Sbjct: 542 GCFNCGEEGHFARECPNVGK 601


>BU964576 
          Length = 445

 Score = 32.7 bits (73), Expect = 0.37
 Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
 Frame = +2

Query: 221 SSLKGHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDE---DQSV 277
           ++ +  E++    E  +K+K   + SK +  K  ++    ESE +  +GD+ E   D S 
Sbjct: 110 AAARAAEVAPPASEEKRKAKKAKVASKQQKKKEKESETVVESENKVEEGDASENVLDASN 289

Query: 278 KMAMLS-----NKLEYLARKQKKFLSKRG---SYKNSKKEDQKGCFNCKKPG 321
           K  ++      N  +  A + KK L K     +   + ++ +KGCF  ++ G
Sbjct: 290 KTIVVEHCKQCNSFKTRANQVKKGLEKADIGITVILNPEKPRKGCFEIRQEG 445


>TC226613 similar to UP|Q8H0V8 (Q8H0V8) Spliceosome associated protein-like
           (At4g21660), partial (59%)
          Length = 1844

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 31/136 (22%), Positives = 55/136 (39%), Gaps = 22/136 (16%)
 Frame = +2

Query: 361 WEDLDSESGSDKEEADDDAK---------AAMRLVATVSSEAVSEAESDSEDENEVYSKI 411
           W DL+ E   ++EE +++ +         A ++ V ++SS        D  D  +   K 
Sbjct: 851 WGDLEEEEEEEEEEEEEEEEEEMEEEELEAGIQSVDSLSSTPTGVETPDVIDLRKQQRKE 1030

Query: 412 PRQELVDSLKE------------LLSLFEHRTNELTDLKEKYVDLMKQQKTTLLELKASE 459
           P + L   L+E                +   T        K VDL++ QKT  +++    
Sbjct: 1031PERPLYQVLEEKEEKIAPGTLLGTTHTYVVGTGTQDKSGAKRVDLLRGQKTDKVDVTLQP 1210

Query: 460 EELKGF-NLISTTYED 474
           EEL+   N++   YE+
Sbjct: 1211EELEAMENVLPAKYEE 1258


>TC219413 similar to UP|Q97LA8 (Q97LA8) Sensory transduction histidine
           kinase, partial (4%)
          Length = 953

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +1

Query: 231 NEHETSKKSKSIA-LPSKGKTSKSSKAYKASESEEESPDGDSDEDQSVKMA 280
           N+HE+ KK ++++ LP++GK  K + +YK  +  ++  D      +S + A
Sbjct: 154 NQHESEKKEENVSMLPNRGKDEKLTDSYKGRKKYKDVADAAQAAFESAEYA 306


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.308    0.126    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,324,708
Number of Sequences: 63676
Number of extensions: 185016
Number of successful extensions: 1159
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of query: 480
length of database: 12,639,632
effective HSP length: 101
effective length of query: 379
effective length of database: 6,208,356
effective search space: 2352966924
effective search space used: 2352966924
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)