TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146681.9 + phase: 2 /pseudo
         (249 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC231148                                                              148  3e-36
TC219384                                                               35  0.042
TC223321 similar to GB|CAD41024.1|21741213|OSJN00063 OSJNBb0086G...    31  0.60
TC209969 similar to UP|Q9SBS1 (Q9SBS1) Ran GTPase activating pro...    30  1.0
BE803368 similar to GP|13249030|gb F-box containing protein TIR1...    30  1.0
TC205665                                                               30  1.0
BU763861                                                               28  3.0
TC228805 similar to GB|AAP68327.1|31711942|BT008888 At1g71440 {A...    28  3.0
BI974488                                                               28  3.9
AW706237 similar to GP|22001349|gb| proteinase inhibitor 20 {Med...    28  5.1
BM525621                                                               28  5.1
TC216999 similar to UP|Q9AUH6 (Q9AUH6) F-box containing protein ...    27  6.7
AW831398 weakly similar to GP|10241587|emb thymidine kinase (LTK...    27  6.7

>TC231148 
          Length = 556

 Score =  148 bits (373), Expect = 3e-36
 Identities = 86/168 (51%), Positives = 99/168 (58%), Gaps = 29/168 (17%)
 Frame = +3

Query: 22  LI*FLSHRGNNLRKDDAENLGYAFAYMPNLEDLDISDNPIEDEGLRYLIPYFAGTSEMCS 81
           L+  L+ R NNL KDD +NL YA  ++PNLE+LDISDN IEDEG+R LIPYF G SE C 
Sbjct: 48  LLRVLNLRENNLGKDDVQNLRYALEHVPNLEELDISDNSIEDEGIRNLIPYFVGASETCP 227

Query: 82  RLACLKLEACDLSCDVVNHLLDSLPVLNGTLKSLSIAENCLG------------------ 123
           R+ CLKLE CDLSC  VN LL  L    G LKSLSIAEN LG                  
Sbjct: 228 RITCLKLENCDLSCVGVNLLLHYLSTFKGPLKSLSIAENYLGRQVVEAIGNLISHTKRST 407

Query: 124 -----------SKVAGALGRFLSTPIEVLDASGIDLLPSGFLELQNML 160
                       +V  ALG F  TPIEVLD +GI L   GF ELQ+++
Sbjct: 408 RHLYFDWVFLYRQVVEALGNFFHTPIEVLDIAGIGLGSDGFQELQSLI 551


>TC219384 
          Length = 1313

 Score = 34.7 bits (78), Expect = 0.042
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = +2

Query: 51  LEDLDISDNPIEDEGLRYLIPYFAGTSEMCSRLACLKLEAC 91
           +E+LD++DN I+DEGL  +          CSRL+ LK+  C
Sbjct: 119 IEELDLTDNEIDDEGLMSI--------SSCSRLSSLKIGIC 217


>TC223321 similar to GB|CAD41024.1|21741213|OSJN00063 OSJNBb0086G13.8 {Oryza
           sativa (japonica cultivar-group);} , partial (15%)
          Length = 724

 Score = 30.8 bits (68), Expect = 0.60
 Identities = 14/37 (37%), Positives = 21/37 (55%)
 Frame = +2

Query: 182 TARFLSKLLPQAPRLVDVNASSNCMPIESLSIISSAL 218
           T+ FL ++    PRLVD   S N +P+E  S++   L
Sbjct: 302 TSWFLIRIAVTQPRLVDFQKSQNIVPVEMTSVVVRVL 412


>TC209969 similar to UP|Q9SBS1 (Q9SBS1) Ran GTPase activating protein,
           partial (64%)
          Length = 1143

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 17/53 (32%), Positives = 26/53 (48%)
 Frame = +2

Query: 31  NNLRKDDAENLGYAFAYMPNLEDLDISDNPIEDEGLRYLIPYFAGTSEMCSRL 83
           N +RKD A+ L        + + L+I+ N I DEG+  L   F  + +M   L
Sbjct: 809 NQIRKDGAQQLAVTVVQKADFKLLNINGNFISDEGIDELKDIFKKSPDMLGPL 967


>BE803368 similar to GP|13249030|gb F-box containing protein TIR1 {Populus
           tremula x Populus tremuloides}, partial (17%)
          Length = 434

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 21/69 (30%), Positives = 32/69 (45%)
 Frame = -2

Query: 41  LGYAFAYMPNLEDLDISDNPIEDEGLRYLIPYFAGTSEMCSRLACLKLEACDLSCDVVNH 100
           L Y     PNL+ L+I D+P  D  LR  + +F     +      L  +AC     ++ H
Sbjct: 364 LQYVLEGCPNLQKLEIRDSPFGDGALRSGLHHFYNMRFLWMSSCKLTRQACREVARMLPH 185

Query: 101 LLDSLPVLN 109
           L+  L V+N
Sbjct: 184 LV--LEVIN 164


>TC205665 
          Length = 796

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 18/54 (33%), Positives = 27/54 (49%)
 Frame = +1

Query: 48  MPNLEDLDISDNPIEDEGLRYLIPYFAGTSEMCSRLACLKLEACDLSCDVVNHL 101
           M  L  L++S++ I +EGLRYL P           L  L LE+C ++   +  L
Sbjct: 292 MTALRSLNVSNSRITNEGLRYLKP--------LKNLRTLTLESCKVTASEIKKL 429


>BU763861 
          Length = 463

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 77  SEMCSRLACLKLEACDLSCDVVNHLLDSLPVLNGTLKSLSIAENCLG 123
           ++ C  L CLKLE+CD+   V  + L  L +    LK L + + C G
Sbjct: 69  ADSCPDLVCLKLESCDM---VTENCLYQLGLNCSLLKELDLTD-CSG 197


>TC228805 similar to GB|AAP68327.1|31711942|BT008888 At1g71440 {Arabidopsis
           thaliana;} , partial (34%)
          Length = 1101

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +1

Query: 49  PNLEDLDISDNPIEDEGLRYLIPYFAGTSEMCSRLACLKL 88
           PNL D+ +SDNPI D G R  +P F     + +RLA +++
Sbjct: 202 PNLVDIRLSDNPITDSG-RGGVPRFV----LIARLAKVQI 306


>BI974488 
          Length = 430

 Score = 28.1 bits (61), Expect = 3.9
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +1

Query: 69  LIPYFAGTSEMCSRLACLKLEACDLSCDVVNHLLDSLPVLNGTLKSLSIAENCLG 123
           L+PY + T+++CS      L A   +C ++     + P    T  + S    CLG
Sbjct: 139 LLPYVSNTTQLCSGATAASLSALPRACLII----QNAPTTISTTSTSSRLMMCLG 291


>AW706237 similar to GP|22001349|gb| proteinase inhibitor 20 {Medicago
          truncatula}, partial (12%)
          Length = 322

 Score = 27.7 bits (60), Expect = 5.1
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +2

Query: 45 FAYMPNLEDL----DISDNPIEDEGLRYLIPYFAGTSEMCSRLACLKLEAC 91
          FA++   ED+    DIS NPI   G  Y+IP   GT+    +L+  +   C
Sbjct: 20 FAFLALSEDVEQVVDISGNPIFPGGTYYIIPST*GTTHSGLKLSRTRNSNC 172


>BM525621 
          Length = 405

 Score = 27.7 bits (60), Expect = 5.1
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = -3

Query: 81  SRLACLKLEACDLSCDVVNHLLDSLPVLNGTLKSLSIAENCL 122
           SR  CL    C   CD           LNGT K LS +  CL
Sbjct: 151 SR*HCLTTRGCSFCCD-----------LNGTCKLLSFSRRCL 59


>TC216999 similar to UP|Q9AUH6 (Q9AUH6) F-box containing protein TIR1,
           partial (38%)
          Length = 1338

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 21/73 (28%), Positives = 34/73 (45%), Gaps = 8/73 (10%)
 Frame = +1

Query: 36  DDAENLGYAFAYMPNLEDLDISDNPIEDEGLR------YLIPYFAGTSEMCSRLACLKLE 89
           D    L Y     PNL+ L+I D+P  D  LR      Y + +   +S   +R AC ++ 
Sbjct: 436 DTDVGLKYVLEGCPNLQKLEIRDSPFGDGALRSGLHHYYNMRFLWMSSCKLTRQACQEVA 615

Query: 90  AC--DLSCDVVNH 100
               +L  +V+N+
Sbjct: 616 RALPNLVLEVINN 654


>AW831398 weakly similar to GP|10241587|emb thymidine kinase (LTK) {Fagus
          sylvatica}, partial (55%)
          Length = 432

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 13/31 (41%), Positives = 20/31 (63%)
 Frame = +1

Query: 41 LGYAFAYMPNLEDLDISDNPIEDEGLRYLIP 71
          LGY  + + +L +LD+SDN I D  + Y +P
Sbjct: 43 LGYLLSDLMSLRELDLSDNKIHDT-IPYQLP 132


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.330    0.146    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,213,543
Number of Sequences: 63676
Number of extensions: 149651
Number of successful extensions: 935
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of query: 249
length of database: 12,639,632
effective HSP length: 95
effective length of query: 154
effective length of database: 6,590,412
effective search space: 1014923448
effective search space used: 1014923448
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.9 bits)