BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146681.8 + phase: 0
(173 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BQ272628 169 5e-43
BG654205 35 0.018
TC207918 similar to UP|Q9FWS7 (Q9FWS7) F1B16.8 protein (At1g7539... 28 1.7
TC229435 weakly similar to UP|Q14883 (Q14883) Intestinal mucin (... 28 2.8
TC226030 similar to UP|YIPL_SOLTU (P59234) Yippee-like protein, ... 27 3.7
TC226032 similar to UP|YIPL_SOLTU (P59234) Yippee-like protein, ... 27 3.7
BU546250 similar to GP|21553745|gb| Yippee-like protein {Arabido... 27 3.7
TC226034 similar to UP|YIPL_SOLTU (P59234) Yippee-like protein, ... 27 3.7
TC219711 similar to UP|Q9LZ73 (Q9LZ73) 3-oxoacyl-[acyl-carrier-p... 27 6.3
TC211048 similar to UP|Q9FUU9 (Q9FUU9) Leaf senescence-associate... 26 8.2
TC218602 similar to GB|AAB66486.1|2318131|AF014824 histone deace... 26 8.2
BE331434 26 8.2
TC229611 similar to UP|Q9LZ98 (Q9LZ98) ABC transporter-like prot... 26 8.2
TC223713 26 8.2
>BQ272628
Length = 420
Score = 169 bits (429), Expect = 5e-43
Identities = 89/140 (63%), Positives = 106/140 (75%), Gaps = 1/140 (0%)
Frame = +1
Query: 4 EAPPSSLITLCIDHLANQLLFGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLH- 62
EAPPS LI+LCID LA Q L D+ +P IY+LPSHLL LI+RL P AL FH H
Sbjct: 25 EAPPS-LISLCIDALAQQFLRPSDD----LPSIYDLPSHLLHTLITRLPPFALRTFHRHH 189
Query: 63 MPFQDVNEEDFSRDDSTNNKRKRSRDWNLNTAWQKLFELRWPDLINQIQPSDWQKAYWEA 122
+PF +EE FSRDDST KRKR+RDWNL++AWQ+LF LRWPD + QIQP+DW++ YWE
Sbjct: 190 LPF---DEEGFSRDDSTK-KRKRARDWNLSSAWQRLFLLRWPDRVKQIQPTDWEQHYWEI 357
Query: 123 HLQNCLDEAAEIALISPFKG 142
HLQ+CLDEAAE+ALI F G
Sbjct: 358 HLQDCLDEAAEVALIPSFSG 417
>BG654205
Length = 286
Score = 35.0 bits (79), Expect = 0.018
Identities = 17/35 (48%), Positives = 21/35 (59%)
Frame = +2
Query: 62 HMPFQDVNEEDFSRDDSTNNKRKRSRDWNLNTAWQ 96
H P E FSR KRKR+R+WNL++AWQ
Sbjct: 185 HQPTISTREGFFSRRPPPK-KRKRAREWNLSSAWQ 286
>TC207918 similar to UP|Q9FWS7 (Q9FWS7) F1B16.8 protein (At1g75390), partial
(40%)
Length = 882
Score = 28.5 bits (62), Expect = 1.7
Identities = 19/77 (24%), Positives = 30/77 (38%)
Frame = -2
Query: 53 PHALYHFHLHMPFQDVNEEDFSRDDSTNNKRKRSRDWNLNTAWQKLFELRWPDLINQIQP 112
PH +H ++P+ R+ NN + NLN + L+WP L+ P
Sbjct: 518 PHPSSRYH*YLPYHHS*MIPP*RNSQQNNTLAQ----NLNLFTTETCCLQWPQLVG*DMP 351
Query: 113 SDWQKAYWEAHLQNCLD 129
W + + NC D
Sbjct: 350 CAWDS*NYCYYCNNCYD 300
>TC229435 weakly similar to UP|Q14883 (Q14883) Intestinal mucin (Fragment),
partial (26%)
Length = 1075
Score = 27.7 bits (60), Expect = 2.8
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +2
Query: 52 TPHALYHFHLHMPFQDVNEEDFSRDDSTNNKRKRSRDWNLNTAWQKLFELRWPD 105
+PH +H++L P E SR S + K RS +++ +++W+KL PD
Sbjct: 215 SPHHHFHYYLSSPIHHSRESSTSR-FSASLKNPRS-NFSSSSSWKKLHPHPNPD 370
>TC226030 similar to UP|YIPL_SOLTU (P59234) Yippee-like protein, complete
Length = 651
Score = 27.3 bits (59), Expect = 3.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 50 RLTPHALYHFHLHMP 64
R+T H L+HFH H+P
Sbjct: 464 RMTKHHLHHFHQHVP 420
>TC226032 similar to UP|YIPL_SOLTU (P59234) Yippee-like protein, partial
(41%)
Length = 612
Score = 27.3 bits (59), Expect = 3.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 50 RLTPHALYHFHLHMP 64
R+T H L+HFH H+P
Sbjct: 304 RMTKHHLHHFHQHVP 260
>BU546250 similar to GP|21553745|gb| Yippee-like protein {Arabidopsis
thaliana}, partial (56%)
Length = 629
Score = 27.3 bits (59), Expect = 3.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 50 RLTPHALYHFHLHMP 64
R+T H L+HFH H+P
Sbjct: 97 RMTKHHLHHFHQHVP 141
>TC226034 similar to UP|YIPL_SOLTU (P59234) Yippee-like protein, complete
Length = 552
Score = 27.3 bits (59), Expect = 3.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 50 RLTPHALYHFHLHMP 64
R+T H L+HFH H+P
Sbjct: 438 RMTKHHLHHFHQHVP 394
>TC219711 similar to UP|Q9LZ73 (Q9LZ73) 3-oxoacyl-[acyl-carrier-protein]
synthase-like protein, partial (60%)
Length = 839
Score = 26.6 bits (57), Expect = 6.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 21 QLLFGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFH 60
QLLF ++ V+ +PS L + L+S P +HFH
Sbjct: 634 QLLFWLPH*TVVLKVL*NMPSLLHETLLSLHAPLFYFHFH 515
>TC211048 similar to UP|Q9FUU9 (Q9FUU9) Leaf senescence-associated
receptor-like protein kinase, partial (24%)
Length = 675
Score = 26.2 bits (56), Expect = 8.2
Identities = 10/17 (58%), Positives = 14/17 (81%)
Frame = -1
Query: 6 PPSSLITLCIDHLANQL 22
PP+S ++ C+DHLAN L
Sbjct: 357 PPTSSLSGCMDHLANLL 307
>TC218602 similar to GB|AAB66486.1|2318131|AF014824 histone deacetylase
{Arabidopsis thaliana;} , partial (21%)
Length = 771
Score = 26.2 bits (56), Expect = 8.2
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -1
Query: 51 LTPHA-LYHFHLHMPFQDVNEEDF 73
L P A L+H LH P QD N+E F
Sbjct: 255 LDPKAHLHHHDLHRPLQDQNQEVF 184
>BE331434
Length = 477
Score = 26.2 bits (56), Expect = 8.2
Identities = 12/29 (41%), Positives = 16/29 (54%)
Frame = +1
Query: 56 LYHFHLHMPFQDVNEEDFSRDDSTNNKRK 84
L F+LH+ F ED DD+ NN +K
Sbjct: 208 LKKFNLHLRFYKPKFEDNDDDDNENNNKK 294
>TC229611 similar to UP|Q9LZ98 (Q9LZ98) ABC transporter-like protein
(At5g02270), partial (58%)
Length = 857
Score = 26.2 bits (56), Expect = 8.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 27 DEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLHMP 64
D +++I+ ++ + SH + +L+ LYH LHMP
Sbjct: 780 DTILSIVEILRYISSHFVYNLL*SF----LYHNELHMP 679
>TC223713
Length = 420
Score = 26.2 bits (56), Expect = 8.2
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3
Query: 152 TMLSCFLCNEIFNAKLPLICLC 173
T L F CN NA LPL C C
Sbjct: 301 TRLG*FCCNGRINALLPLPCCC 236
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.139 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,191,057
Number of Sequences: 63676
Number of extensions: 154795
Number of successful extensions: 884
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of query: 173
length of database: 12,639,632
effective HSP length: 91
effective length of query: 82
effective length of database: 6,845,116
effective search space: 561299512
effective search space used: 561299512
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Medicago: description of AC146681.8