TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146664.9 - phase: 0 
         (59 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC210865                                                               48  9e-07
TC228336 weakly similar to UP|Q6K2P4 (Q6K2P4) Methylenetetrahydr...    26  4.8
TC211979 similar to UP|Q9LFL0 (Q9LFL0) Cellulose synthase cataly...    25  6.2
TC203410                                                               25  6.2
TC223363                                                               25  8.1

>TC210865 
          Length = 1111

 Score = 48.1 bits (113), Expect = 9e-07
 Identities = 20/52 (38%), Positives = 30/52 (57%)
 Frame = +3

Query: 1   MGHLSTLACPKVHEEARYLPNMISANFLQKSTVWPESFKNSGTNNFSIGIYF 52
           + H+S LAC +V EE  + P ++ A FL +  VW ESFK     +  I ++F
Sbjct: 366 LAHISNLACSQVAEETGHFPEVLHAEFLPRDKVWAESFKRGDPTDQDIALFF 521


>TC228336 weakly similar to UP|Q6K2P4 (Q6K2P4) Methylenetetrahydrofolate
            dehydrogenase-like, partial (55%)
          Length = 1550

 Score = 25.8 bits (55), Expect = 4.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 23   ISANFLQKSTVWPESFKNSGTNNFSIGIYFLSPHN 57
            IS  F+   T+W   + +S  NN    +Y  SPH+
Sbjct: 1049 ISHQFVTSGTIWILYWVDSDVNNDCTRLYPASPHH 945


>TC211979 similar to UP|Q9LFL0 (Q9LFL0) Cellulose synthase catalytic
           subunit-like protein, partial (8%)
          Length = 573

 Score = 25.4 bits (54), Expect = 6.2
 Identities = 9/17 (52%), Positives = 12/17 (69%)
 Frame = +3

Query: 25  ANFLQKSTVWPESFKNS 41
           A+F  K T+WPE+F  S
Sbjct: 297 ASFTSKCTIWPENFLGS 347


>TC203410 
          Length = 623

 Score = 25.4 bits (54), Expect = 6.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 7   LACPKVHEEARYLPNMISANFL 28
           L CP+  E  RYLP+ I +N +
Sbjct: 575 LYCPREGEGGRYLPSSIHSNII 510


>TC223363 
          Length = 427

 Score = 25.0 bits (53), Expect = 8.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 39  KNSGTNNFSIGIYFLSPH 56
           KNS T N  +G Y+L PH
Sbjct: 326 KNSVTFNVPVGCYYLIPH 379


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.318    0.133    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,076,556
Number of Sequences: 63676
Number of extensions: 29437
Number of successful extensions: 166
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of query: 59
length of database: 12,639,632
effective HSP length: 35
effective length of query: 24
effective length of database: 10,410,972
effective search space: 249863328
effective search space used: 249863328
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)