BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146664.7 - phase: 0
(2305 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 354 3e-97
CF922488 334 3e-91
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 288 1e-77
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 221 7e-71
NP595172 polyprotein [Glycine max] 243 9e-64
NP334778 reverse transcriptase [Glycine max] 217 5e-56
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 204 4e-52
BQ628592 112 1e-48
AW184779 111 9e-48
NP395547 reverse transcriptase [Glycine max] 183 9e-46
NP395548 reverse transcriptase [Glycine max] 173 7e-43
TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotei... 173 7e-43
TC232528 weakly similar to UP|Q6WAY5 (Q6WAY5) Gag/pol polyprotei... 145 2e-34
BG839293 116 1e-25
BI498328 115 2e-25
CF922341 103 1e-21
BI316922 99 2e-20
BU084093 90 1e-17
BE804087 85 4e-16
BI321666 83 2e-15
>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
Length = 843
Score = 354 bits (908), Expect = 3e-97
Identities = 163/270 (60%), Positives = 207/270 (76%)
Frame = +1
Query: 1856 MINVNGHNTVPVINVQFLDRPAYVFVAEAIDDDKPWYHDIQVFLQTQKYPPGASNKDKKT 1915
+ + N +P I +PA+ E D KPWY DI+ ++ +++Y P ++ DK+T
Sbjct: 34 LCSXNAARDLPYIEFWCRGKPAHCCQVEEERDGKPWYFDIKRYVISKEYLPEIADNDKRT 213
Query: 1916 LRKLSSRFFLNEDVLYKRNFDGVLLRCVDKHEAEKLMCEIHEGSFGTHSCGHAMAKKILR 1975
LR+L++ FF++ +LYKRN D LRCVD EA ++ E+HEGSFGTH+ GHAMA+KILR
Sbjct: 214 LRRLAAGFFMSGSILYKRNHDMKPLRCVDAREANHMIEEVHEGSFGTHANGHAMARKILR 393
Query: 1976 AGYYWITMHADCYNHAKRCHKCQIYADKIHIPPSMLNVISSPWPFSMWGIDMIGRIEPKA 2035
AGYYW+TM +DC H ++CHKCQ +AD ++ PP LNV+SSPWPFSMWGID+IG IEPKA
Sbjct: 394 AGYYWLTMESDCCVHVRKCHKCQAFADNVNAPPHPLNVMSSPWPFSMWGIDVIGAIEPKA 573
Query: 2036 SNGHRFILVAIDYFTKWVEAASYANVTKQVVVRFIKNNLISRYGVPNRIITDNGTNLNNN 2095
SNGHRFILVAIDYFTKWVEAASY +V + VVVRFIK +I RYG+P +IITDNGTNLNN
Sbjct: 574 SNGHRFILVAIDYFTKWVEAASYTDVMRGVVVRFIKKEIICRYGLPRKIITDNGTNLNNK 753
Query: 2096 MMKELCDDFKIQHHNSSPYRPQMNGAVEAA 2125
MM E+C++FKIQHHN +PYRP+MN AVE A
Sbjct: 754 MMGEICEEFKIQHHNPTPYRPKMN*AVEVA 843
>CF922488
Length = 741
Score = 334 bits (856), Expect = 3e-91
Identities = 168/246 (68%), Positives = 195/246 (78%)
Frame = +3
Query: 1316 VPKKDGKIRMCVDYRDLNKASPKDNFPLPHIDVLVDNTAKCKVFSFMDGFSGYNQIRMAP 1375
V K+DGK+ MCVDYRDLN ASPKD FPLPHI+VLVDNT FSFMDGFSGYNQI++AP
Sbjct: 3 VLKEDGKV*MCVDYRDLN*ASPKDKFPLPHINVLVDNTTSFSQFSFMDGFSGYNQIKIAP 182
Query: 1376 EDREKTSFITPWGAFCYVVMPFGLINAGATYQRGMTKIFHDMIHKEIEVYVDDMIVKSGT 1435
ED EKT+FIT WG FCY M FGL N GATYQR M +F DM+HKEIEVY+DDMIVKS T
Sbjct: 183 EDMEKTTFITLWGTFCYKAMSFGLKNVGATYQRAMVALF*DMMHKEIEVYMDDMIVKSRT 362
Query: 1436 EEEHVEYLLKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMP 1495
EEEH+ L K+F+RLRKY+LRLNP KC F V+S KLL FI S +GIEVD +KV+ I EM
Sbjct: 363 EEEHLVNLRKLFRRLRKYRLRLNPAKCMFEVKSRKLLDFIDS*RGIEVDSNKVKVILEMA 542
Query: 1496 VPKTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKDQGVKWNDDCQKAFDQIKEYLL 1555
P TEKQV+GFLGRLNYI RFIS + ATC P+F LL K+Q VKW+ DC AF++IK+ L+
Sbjct: 543 KPHTEKQVQGFLGRLNYIVRFIS*LIATCEPLFILLCKNQFVKWDHDC*VAFERIKQCLI 722
Query: 1556 EPPILV 1561
P +LV
Sbjct: 723 NPHVLV 740
>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 669
Score = 288 bits (738), Expect = 1e-77
Identities = 139/182 (76%), Positives = 157/182 (85%)
Frame = +1
Query: 2123 EAANKNIKKIIQKMVVTYKDWHEMLPYALYGYRTSVRTSTGATPFSLVYGMEAVLPVEVE 2182
EAANKNIKKIIQKM V+YKDWHEMLP+AL+GYRTSVRTSTGATPFSLVYGMEAVLP EVE
Sbjct: 1 EAANKNIKKIIQKMTVSYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPFEVE 180
Query: 2183 IPSLRVLMEAELSEAEWCQSRYDQLNLIEEKRMAALCHGQLYQSRMKQAFDKGVHPREFK 2242
+PSLR+L E+ L E+EW Q+RYDQLNLIE KR+ A+ HG+LYQ RMK AFDK V R+F
Sbjct: 181 VPSLRILAESGLKESEWAQTRYDQLNLIEGKRLTAMSHGRLYQQRMKSAFDKKVCLRKFH 360
Query: 2243 EGDLVLKCIKSFQPDPRGKWTPNYEGPYVVKRAFSGGALILTNMDGEELPRPVNSDAVKK 2302
EGDLVLK + D RGKW PNYEGP+VVKRAFSGGAL+LTNMDGEELP P+NSD VK+
Sbjct: 361 EGDLVLKKMSHAVKDHRGKWAPNYEGPFVVKRAFSGGALVLTNMDGEELPSPMNSDVVKR 540
Query: 2303 YF 2304
Y+
Sbjct: 541 YY 546
>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
Length = 803
Score = 221 bits (562), Expect(2) = 7e-71
Identities = 104/199 (52%), Positives = 143/199 (71%)
Frame = +2
Query: 1782 IEEAIDLRIKKIVIYGDSALVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPR 1841
++ AID +K + +YGDSALVI+Q++GE ETR P LIPY+ Y + L FF+++ HHV
Sbjct: 206 VQAAIDSNVKLLKVYGDSALVIHQLRGECETRDPNLIPYQAYIKELAGFFDEISFHHVA* 385
Query: 1842 DENQMADALATLSSMINVNGHNTVPVINVQFLDRPAYVFVAEAIDDDKPWYHDIQVFLQT 1901
+ENQMADALATL SM + H +P I + RPA+ + E D KPWY DI+ ++++
Sbjct: 386 EENQMADALATLVSMFQLTPHGDLPYIEFRCRGRPAHCCLVEEERDGKPWYFDIKRYVES 565
Query: 1902 QKYPPGASNKDKKTLRKLSSRFFLNEDVLYKRNFDGVLLRCVDKHEAEKLMCEIHEGSFG 1961
++YP AS+ DK+ R+L++ FF++ +LYKRN D VLL CV+ E E ++ E+HEGSFG
Sbjct: 566 KEYPLEASDNDKRRKRRLAAGFFMSGSILYKRNHDMVLLHCVNGKEVENMLGEVHEGSFG 745
Query: 1962 THSCGHAMAKKILRAGYYW 1980
THS GHAMA+KILRAGYYW
Sbjct: 746 THSNGHAMARKILRAGYYW 802
Score = 67.8 bits (164), Expect(2) = 7e-71
Identities = 29/55 (52%), Positives = 38/55 (68%)
Frame = +1
Query: 1726 DPESEWGLIFDGAVNVYGSGIGAVLITPKGTHIPFTARLRFDCTNNIVEYEACIM 1780
+ +W + FD A NV G G+GA+L++P IPFT RL FDCTNN+ EYEAC +
Sbjct: 37 EDRDKWIVWFDRASNVLGHGVGAILVSPDNQCIPFTTRLGFDCTNNMAEYEACAL 201
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 243 bits (619), Expect = 9e-64
Identities = 152/454 (33%), Positives = 239/454 (52%), Gaps = 2/454 (0%)
Frame = +1
Query: 1226 LDVSIKKRVIELIREYVDIFAWSYKDMPGLDPDVVEHRLPLKPECPPVKQKLRRSHPDMA 1285
L +I + L+ Y +FA P + D H +PLK PVK + R
Sbjct: 1660 LPTNIDPELAILLHTYAQVFAVPASLPPQREQD---HAIPLKQGSGPVKVRPYRYPHTQK 1830
Query: 1286 LKIKEEVRKQIDAGFLVTSEYPQWLANIVPVPKKDGKIRMCVDYRDLNKASPKDNFPLPH 1345
+I++ +++ + G + S P L I+ V KKDG R C DYR LN + KD+FP+P
Sbjct: 1831 DQIEKMIQEMLVQGIIQPSNSPFSLP-ILLVKKKDGSWRFCTDYRALNAITVKDSFPMPT 2007
Query: 1346 IDVLVDNTAKCKVFSFMDGFSGYNQIRMAPEDREKTSFITPWGAFCYVVMPFGLINAGAT 1405
+D L+D + FS +D SGY+QI + PEDREKT+F T G + ++VMPFGL NA AT
Sbjct: 2008 VDELLDELHGAQYFSKLDLRSGYHQILVQPEDREKTAFRTHHGHYEWLVMPFGLTNAPAT 2187
Query: 1406 YQRGMTKIFHDMIHKEIEVYVDDMIVKSGTEEEHVEYLLKMFQRLRKYKLRLNPNKCTFG 1465
+Q M KIF + K + V+ DD+++ S + ++H+++L + Q L++++L +KC+FG
Sbjct: 2188 FQCLMNKIFQFALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLSKCSFG 2367
Query: 1466 VRSGKLLGFIVSQKGIEVDPDKVRAIREMPVPKTEKQVRGFLGRLNYISRFISHMTATCG 1525
LG VS G+ ++ KV+A+ + P P KQ+RGFLG Y RFI G
Sbjct: 2368 DTEVDYLGHKVSGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLTGYYRRFIKSYANIAG 2547
Query: 1526 PIFKLLRKDQGVKWNDDCQKAFDQIKEYLLEPPILVPPVDGRPLIMYLTVLEDSMGCVLG 1585
P+ LL+KD + WN++ + AF ++K+ + E P+L P +P I+ +G VLG
Sbjct: 2548 PLTDLLQKDSFL-WNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILETDASGIGVGAVLG 2724
Query: 1586 QQDETGKKEHVIYYLSKKFTDCESRYSVLEKTCCALAWAAKRLRHYMINHTTWLISKMDP 1645
Q H I Y SKK + S + A+ A + RHY++ + + +
Sbjct: 2725 QNG------HPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQRS 2886
Query: 1646 IKYIFEKPALTGRIARW--QMLLSEYDIEYRTQK 1677
+K + ++ T W + L ++ IEY+ K
Sbjct: 2887 LKSLMDQSLQTPEQQAWLHKFLGYDFKIEYKPGK 2988
Score = 88.2 bits (217), Expect = 4e-17
Identities = 71/263 (26%), Positives = 120/263 (44%), Gaps = 8/263 (3%)
Frame = +1
Query: 1920 SSRFFLNEDVLYKRNFDGVLLRCVDKHEAEKLMCEIHEGSFGTHSCGHAMAKKILRAGYY 1979
+S + + E +LY + D V++ ++ K++ E H G H+ G L+A +Y
Sbjct: 3136 ASHYTVREGLLYWK--DRVVIPA-EEEIVNKILQEYHSSPIGGHA-GITRTLARLKAQFY 3303
Query: 1980 WITMHADCYNHAKRCHKCQIYADKIHIPPSMLNVISSPWPFSMW---GIDMIGRIEPKAS 2036
W M D + ++C CQ +P +L + P P +W +D I + S
Sbjct: 3304 WPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPL--PIPQQVWEDVAMDFITGLPN--S 3471
Query: 2037 NGHRFILVAIDYFTKWVEAASY-ANVTKQVVVRFIKNNLISRYGVPNRIITDNGTNLNNN 2095
G I+V ID TK+ A+ +VV ++++ +G+P I++D +
Sbjct: 3472 FGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGIPRSIVSDRDRVFTST 3651
Query: 2096 MMKELCDDFKIQHHN---SSPYRPQMNGAVEAANKNIKKIIQKMVVTY-KDWHEMLPYAL 2151
+ L FK+Q SS Y PQ +G E NK ++ ++ + K W + LP+A
Sbjct: 3652 FWQHL---FKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEHPKGWVKALPWAE 3822
Query: 2152 YGYRTSVRTSTGATPFSLVYGME 2174
+ Y T+ S G TPF +YG E
Sbjct: 3823 FWYNTAYHMSLGMTPFRALYGRE 3891
>NP334778 reverse transcriptase [Glycine max]
Length = 431
Score = 217 bits (552), Expect = 5e-56
Identities = 101/143 (70%), Positives = 115/143 (79%)
Frame = +3
Query: 1324 RMCVDYRDLNKASPKDNFPLPHIDVLVDNTAKCKVFSFMDGFSGYNQIRMAPEDREKTSF 1383
RMCVDYRDLN+ASPKDNFPLPHID+L+ N A +FSFMDGFSGYNQI+MAPED EKT+F
Sbjct: 3 RMCVDYRDLNRASPKDNFPLPHIDILMANMASFALFSFMDGFSGYNQIKMAPEDMEKTTF 182
Query: 1384 ITPWGAFCYVVMPFGLINAGATYQRGMTKIFHDMIHKEIEVYVDDMIVKSGTEEEHVEYL 1443
IT WG FCY VM FGL N GATY R M +F DM+HKEIE YVD+MI KS EEEH+ L
Sbjct: 183 ITLWGTFCYKVMSFGLKNFGATYHRAMVALFQDMMHKEIEAYVDEMIAKSRMEEEHLVNL 362
Query: 1444 LKMFQRLRKYKLRLNPNKCTFGV 1466
+F +LRKY+LRLNP KC FG+
Sbjct: 363 QNLFGQLRKYRLRLNPRKCVFGL 431
>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 402
Score = 204 bits (519), Expect = 4e-52
Identities = 98/133 (73%), Positives = 112/133 (83%)
Frame = +2
Query: 1359 FSFMDGFSGYNQIRMAPEDREKTSFITPWGAFCYVVMPFGLINAGATYQRGMTKIFHDMI 1418
FSFMDGFSGYNQI MA ED EKT+F+T WG F Y VM FGL N GATYQR M +FHDM+
Sbjct: 2 FSFMDGFSGYNQI*MAREDVEKTTFVTLWGTFSYRVMAFGLKNTGATYQRAMVALFHDMM 181
Query: 1419 HKEIEVYVDDMIVKSGTEEEHVEYLLKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQ 1478
HKEIEVYVDDMI KS TE EH+ L K+F RL+KY+L+LNP KCTFGV+SGKLLGFIVSQ
Sbjct: 182 HKEIEVYVDDMIAKSRTETEHLVNLCKLFGRLQKYQLKLNPTKCTFGVKSGKLLGFIVSQ 361
Query: 1479 KGIEVDPDKVRAI 1491
KGIE+DP+KV+A+
Sbjct: 362 KGIEIDPEKVKAL 400
>BQ628592
Length = 423
Score = 112 bits (279), Expect(2) = 1e-48
Identities = 48/61 (78%), Positives = 57/61 (92%)
Frame = -3
Query: 1611 YSVLEKTCCALAWAAKRLRHYMINHTTWLISKMDPIKYIFEKPALTGRIARWQMLLSEYD 1670
YS+LE+TCC L WA+ RLR YM++HTTWLISKMDP+KYIFEKPALTGRIARWQ+LLSE++
Sbjct: 184 YSMLERTCCTLVWASHRLRQYMLSHTTWLISKMDPVKYIFEKPALTGRIARWQVLLSEFN 5
Query: 1671 I 1671
I
Sbjct: 4 I 2
Score = 102 bits (254), Expect(2) = 1e-48
Identities = 44/76 (57%), Positives = 61/76 (79%)
Frame = -1
Query: 1531 LRKDQGVKWNDDCQKAFDQIKEYLLEPPILVPPVDGRPLIMYLTVLEDSMGCVLGQQDET 1590
L K+Q + WN + Q+AF++IK+ L P +L+PPV GRP ++Y+T+L++SMGCVL Q D++
Sbjct: 423 LPKNQAILWNSNYQEAFEKIKQSLANPSVLMPPVTGRPFLLYMTMLDESMGCVLVQHDDS 244
Query: 1591 GKKEHVIYYLSKKFTD 1606
GKKE IYYLSKKFTD
Sbjct: 243 GKKEQAIYYLSKKFTD 196
>AW184779
Length = 432
Score = 111 bits (278), Expect(3) = 9e-48
Identities = 48/74 (64%), Positives = 60/74 (80%)
Frame = +1
Query: 1925 LNEDVLYKRNFDGVLLRCVDKHEAEKLMCEIHEGSFGTHSCGHAMAKKILRAGYYWITMH 1984
L+ ++LYKRN D VLLRCVD EAE+++ E+HEGSFGTH+ HAMA+KILR GYYW+TM
Sbjct: 1 LSRNILYKRNHDMVLLRCVDAREAEQMLVEVHEGSFGTHANIHAMAQKILRVGYYWLTME 180
Query: 1985 ADCYNHAKRCHKCQ 1998
+DC H +CHKCQ
Sbjct: 181 SDCCIHVWKCHKCQ 222
Score = 86.7 bits (213), Expect(3) = 9e-48
Identities = 39/47 (82%), Positives = 43/47 (90%)
Frame = +3
Query: 2022 MWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVR 2068
MWGID+IG IEPKASNGH FILVAIDYFTKWVEA SYA+VT+ VV+R
Sbjct: 291 MWGIDVIGAIEPKASNGHHFILVAIDYFTKWVEAVSYASVTRSVVIR 431
Score = 33.9 bits (76), Expect(3) = 9e-48
Identities = 11/23 (47%), Positives = 18/23 (77%)
Frame = +2
Query: 1998 QIYADKIHIPPSMLNVISSPWPF 2020
Q +AD ++ PP LNV+++PWP+
Sbjct: 224 QTFADNVNAPPIPLNVLAAPWPY 292
>NP395547 reverse transcriptase [Glycine max]
Length = 762
Score = 183 bits (464), Expect = 9e-46
Identities = 98/252 (38%), Positives = 144/252 (56%), Gaps = 18/252 (7%)
Frame = +1
Query: 1288 IKEEVRKQIDAGFLVTSEYPQWLANIVPVPKKDG------------------KIRMCVDY 1329
+++EV K ++AG + W++ + VPKK G + RMC+DY
Sbjct: 1 VRKEVFKLLEAGLIYPISDSSWVSPVQVVPKKGGMTVVKNDRNELIPTRRVTRWRMCIDY 180
Query: 1330 RDLNKASPKDNFPLPHIDVLVDNTAKCKVFSFMDGFSGYNQIRMAPEDREKTSFITPWGA 1389
R LN+A+ KD++PLP +D ++ A+ + F+DG+SGYNQI + P+D+EKT+F P+
Sbjct: 181 RKLNEATRKDHYPLPFMDQMLKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCPFSV 360
Query: 1390 FCYVVMPFGLINAGATYQRGMTKIFHDMIHKEIEVYVDDMIVKSGTEEEHVEYLLKMFQR 1449
F Y MPFGL NA T+QR M IF DM+ K IEV++DD + + L K+ QR
Sbjct: 361 FAYRRMPFGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLANLEKVLQR 540
Query: 1450 LRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPVPKTEKQVRGFLGR 1509
K L LN KC F V+ G +LG +S++GIEV +K+ I ++P P K + FLG
Sbjct: 541 CEKSNLVLNWEKCHFMVQEGIVLGHKISKRGIEVVKEKLDVIDKLPPPVNVKGIHSFLGH 720
Query: 1510 LNYISRFISHMT 1521
+ + RFI T
Sbjct: 721 VGFYRRFIKDFT 756
>NP395548 reverse transcriptase [Glycine max]
Length = 762
Score = 173 bits (439), Expect = 7e-43
Identities = 93/252 (36%), Positives = 142/252 (55%), Gaps = 18/252 (7%)
Frame = +1
Query: 1288 IKEEVRKQIDAGFLVTSEYPQWLANIVPVPKKDGKI------------------RMCVDY 1329
+++EV K ++ G + W++ ++ V KK+G ++C+DY
Sbjct: 1 VRKEVLKLLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDY 180
Query: 1330 RDLNKASPKDNFPLPHIDVLVDNTAKCKVFSFMDGFSGYNQIRMAPEDREKTSFITPWGA 1389
R LN+A+ KD+FPLP +D +++ A + F+D + GYNQI + P+D+EK +F P+G
Sbjct: 181 RKLNEATRKDHFPLPFMDQMLERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCPFGV 360
Query: 1390 FCYVVMPFGLINAGATYQRGMTKIFHDMIHKEIEVYVDDMIVKSGTEEEHVEYLLKMFQR 1449
F Y +PFGL NA T+Q M IF D++ K IEV++DD V + E ++ L + QR
Sbjct: 361 FAYRRIPFGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKKLEMVLQR 540
Query: 1450 LRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPVPKTEKQVRGFLGR 1509
+ L LN KC F VR G +LG +S +GIEVD K+ I ++P P K +R FLG+
Sbjct: 541 CVETNLVLNWEKCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKGIRSFLGQ 720
Query: 1510 LNYISRFISHMT 1521
+ RFI T
Sbjct: 721 ARFYRRFIKDFT 756
>TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotein (Fragment),
partial (8%)
Length = 1320
Score = 173 bits (439), Expect = 7e-43
Identities = 80/156 (51%), Positives = 111/156 (70%)
Frame = +3
Query: 1162 DPMLSPNFEVPVYEAVAEEDEEIPNEIKWMLEQERKTIQPHQEEIEIINLGTEEDKKEIK 1221
DP + ++ E ED +P E++ M+ E + + PHQEE E+++LG+ K+E+K
Sbjct: 852 DPSIDFEQKMNQTEDEGNEDVGLPPELERMVAHEDQEMGPHQEETELVDLGSGSGKREVK 1031
Query: 1222 IGASLDVSIKKRVIELIREYVDIFAWSYKDMPGLDPDVVEHRLPLKPECPPVKQKLRRSH 1281
IG + I++ +I L+R+Y DIFAWSY+DMPGL D+V+HRLPL PEC PVKQKLRR
Sbjct: 1032 IGTGITAPIREELIILLRDYQDIFAWSYQDMPGLSSDIVQHRLPLNPECSPVKQKLRRMK 1211
Query: 1282 PDMALKIKEEVRKQIDAGFLVTSEYPQWLANIVPVP 1317
P+ +LKIKEEV+K DAGFL + YP+W+ANIVP+P
Sbjct: 1212 PETSLKIKEEVKK*FDAGFLAVARYPKWVANIVPIP 1319
Score = 58.9 bits (141), Expect = 2e-08
Identities = 46/134 (34%), Positives = 61/134 (45%), Gaps = 16/134 (11%)
Frame = +1
Query: 981 PWIHDAGAVTSTLHQKLKFVSRGKLITVSGESAFLISNLSAFSVI-GGSGSDGPSFQGF- 1038
PWIH G V STLHQKLKFV G L+ VSGE L+S S+ + S +FQ F
Sbjct: 1 PWIHSVGVVPSTLHQKLKFVVEGHLVIVSGEEDILVSCPSSMPYVEAAEESLETAFQSFE 180
Query: 1039 -----SAEESVGKIETCMASLKDARRVIQEGKTEGWG---------QLVELPENKRKEGI 1084
S + G+ A++ AR ++ G G G L+ N+ K G+
Sbjct: 181 VVSISSVDSLFGQPCLSDAAVMMARVMLGNGYEPGMGLGKDNGGITSLINTQGNRGKYGL 360
Query: 1085 GFLNSKPGMFDPTR 1098
G+ KP D R
Sbjct: 361 GY---KPTQADMKR 393
>TC232528 weakly similar to UP|Q6WAY5 (Q6WAY5) Gag/pol polyprotein
(Fragment), partial (3%)
Length = 449
Score = 145 bits (366), Expect = 2e-34
Identities = 71/138 (51%), Positives = 100/138 (72%)
Frame = +1
Query: 822 AKISIMALLSSSGAHRDALRKVLDQAFVDYDVTLGQFESIVGNVTACNSLTFSDEDLPAE 881
A++S++ LL SS HR L KVL++A V D+++ F +V N+TA N L F++E++PAE
Sbjct: 31 ARVSLLELLMSSEPHRALLVKVLNEAHVAQDISVEGFGGLVNNITANNYLAFAEEEIPAE 210
Query: 882 GNKHNRALLISVLCRTDSLSNVLIDTGSALNVMPKSTLDQLAYSEAPLRLSKVTVRAFDG 941
G HN+AL +SV C ++ VLID G +LNVMPKSTLD+L ++ + L+ S + VRAFDG
Sbjct: 211 GRGHNKALHVSVKCMDHIVAKVLIDNGYSLNVMPKSTLDKLPFNASHLKPSSMVVRAFDG 390
Query: 942 TRRSVYGEVDLPISVGPH 959
TRR V GE+DLP+ +GPH
Sbjct: 391 TRREVRGEIDLPVQIGPH 444
>BG839293
Length = 781
Score = 116 bits (290), Expect = 1e-25
Identities = 53/122 (43%), Positives = 79/122 (64%)
Frame = +1
Query: 1154 ISESVEHSDPMLSPNFEVPVYEAVAEEDEEIPNEIKWMLEQERKTIQPHQEEIEIINLGT 1213
+ E DP+++ E E ED +P E++ M+ E + + PHQEE E+++LG
Sbjct: 364 VPEGTNTWDPLINFEQETSQTEDEGNEDVGLPPELERMVAHEDQEMGPHQEETELVDLGI 543
Query: 1214 EEDKKEIKIGASLDVSIKKRVIELIREYVDIFAWSYKDMPGLDPDVVEHRLPLKPECPPV 1273
K+E+KIG + I++ +I L+++Y DIFAWSY+DMPGL D+V+H+LPL PEC PV
Sbjct: 544 GSGKREVKIGTGITAPIREELIILLKDYQDIFAWSYQDMPGLSSDIVQHQLPLNPECSPV 723
Query: 1274 KQ 1275
KQ
Sbjct: 724 KQ 729
>BI498328
Length = 335
Score = 115 bits (289), Expect = 2e-25
Identities = 58/118 (49%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Frame = +1
Query: 1675 TQKAVKGSILAEHLAHQPIEDYQPIKFDFPDKEVMYL-KAKDCDEPVFGEGPDPESEWGL 1733
TQKAVKGS LA++LA P++ Y+P+ +FPD+++M L + K E + ++W +
Sbjct: 4 TQKAVKGSALADYLAQ*PLQGYRPMHPEFPDEDIMALFEEKRTHEDI--------NKWIV 159
Query: 1734 IFDGAVNVYGSGIGAVLITPKGTHIPFTARLRFDCTNNIVEYEACIMGIEEAIDLRIK 1791
FDGA N G G+GAVL++P IPFTARL FDCTNN+ EYEAC +G++ AID +K
Sbjct: 160 CFDGASNALGHGVGAVLVSPDDQCIPFTARLGFDCTNNMAEYEACALGVQAAIDFDVK 333
>CF922341
Length = 675
Score = 103 bits (256), Expect = 1e-21
Identities = 59/152 (38%), Positives = 91/152 (59%), Gaps = 6/152 (3%)
Frame = +1
Query: 163 GPQHEEQIYHSDSIMGDDKAIDWEERFGALEKKMSNMR----GKETVVQSIYDLCLVPDV 218
GPQ+ Q++ S + + E G L+ +R G++ ++ +L LVP++
Sbjct: 226 GPQYHPQLHLLHSTTSKNPHVMAE--MGKLDHLEEGLRAIEGGEDYAFANLEELFLVPNI 399
Query: 219 NIPPKFKMPVFEKYQGDTCPQNHLTMYIRRMIAYKNNVPLLIHCFQDSLTGPAHTWFMGL 278
PPKFK+ F+KY+G TCP+NHL MY ++M AY + LLIH FQ+SLTG A TW+ L
Sbjct: 400 ITPPKFKVLDFDKYKGTTCPKNHLKMYCQKMGAYAKDEELLIHSFQESLTGVAVTWYTNL 579
Query: 279 K--GVTTFEQLAEAFMQQYKYNTYLAPSRKEL 308
+ V +++ L AF++QY+YN + SR +L
Sbjct: 580 EPSRVHSWKDLMVAFVRQYQYNFDMVLSRMQL 675
>BI316922
Length = 405
Score = 99.4 bits (246), Expect = 2e-20
Identities = 48/135 (35%), Positives = 79/135 (57%)
Frame = +3
Query: 1954 EIHEGSFGTHSCGHAMAKKILRAGYYWITMHADCYNHAKRCHKCQIYADKIHIPPSMLNV 2013
E+H G G HS M ++LR GYY TM C + K+C +C + + H+ L+
Sbjct: 3 EMHRGICGMHSKSQLMTTRVLRVGYY**TMRKYCTEYVKKCEEC*KFGNISHLLVEELHN 182
Query: 2014 ISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVRFIKNN 2073
I +PWPF++ G+D++ R P + +++LV ID FTKW+E A ++ V +F+ N
Sbjct: 183 IVAPWPFAI*GVDIL-RPFPLSKRQVKYLLVGIDQFTKWIETEHIAIISIANVRKFV*RN 359
Query: 2074 LISRYGVPNRIITDN 2088
++ +G+PN +I+DN
Sbjct: 360 IVC*FGIPNTLISDN 404
>BU084093
Length = 421
Score = 89.7 bits (221), Expect = 1e-17
Identities = 49/118 (41%), Positives = 62/118 (52%), Gaps = 10/118 (8%)
Frame = -1
Query: 476 SQPPYYPQQPYQQRPQQQPRPQVPH---NQQYQR-------QQFDPLPMTYGALLPSLLA 525
S P P+ P Q+ Q P P N R Q+F PLPMTY LLPSL+A
Sbjct: 355 SSTPVQPKAPAQREAPQVPTPNTTRPVGNSNTTRNFPPRPFQEFTPLPMTYEDLLPSLIA 176
Query: 526 QNLVQTIPPPRIPDSLPRWYRPDLHCIYHQGAPGHDVERCFALKKEVQKLINSKELTF 583
+L P + P+WY P+ C YH G PGH VE+C ALK +VQ L+++ LTF
Sbjct: 175 NHLAVVTPGRVLQPPFPKWYDPNATCKYHGGVPGHSVEKCLALKYKVQHLMDAGWLTF 2
>BE804087
Length = 160
Score = 84.7 bits (208), Expect = 4e-16
Identities = 41/53 (77%), Positives = 45/53 (84%)
Frame = +2
Query: 2123 EAANKNIKKIIQKMVVTYKDWHEMLPYALYGYRTSVRTSTGATPFSLVYGMEA 2175
EAANKNIKK I KM V+YKDWHEM +AL+ YRT VRTSTGATP+SLVYG EA
Sbjct: 2 EAANKNIKKNI*KMTVSYKDWHEMFSFALHMYRTLVRTSTGATPYSLVYGKEA 160
>BI321666
Length = 430
Score = 82.8 bits (203), Expect = 2e-15
Identities = 43/126 (34%), Positives = 69/126 (54%)
Frame = +2
Query: 1969 MAKKILRAGYYWITMHADCYNHAKRCHKCQIYADKIHIPPSMLNVISSPWPFSMWGIDMI 2028
++ +L++ +Y ++ D Y HA+ C+KCQ L+ I F WGID +
Sbjct: 2 ISTNVLQSRFYLPSIFKDAYVHAQSCNKCQRTRSVSKRNELPLHTILEVEIFDYWGIDFV 181
Query: 2029 GRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVRFIKNNLISRYGVPNRIITDN 2088
G P SN +ILV +DY +KWVEA + ++V++F+K + SR GVP +I +
Sbjct: 182 GPFPPSFSN--EYILVVVDYVSKWVEAVACQKSDAKIVIKFLKKQIFSRLGVPWVLIDNG 355
Query: 2089 GTNLNN 2094
G++L N
Sbjct: 356 GSHLCN 373
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,480,682
Number of Sequences: 63676
Number of extensions: 1565807
Number of successful extensions: 12225
Number of sequences better than 10.0: 380
Number of HSP's better than 10.0 without gapping: 9523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11024
length of query: 2305
length of database: 12,639,632
effective HSP length: 112
effective length of query: 2193
effective length of database: 5,507,920
effective search space: 12078868560
effective search space used: 12078868560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Medicago: description of AC146664.7