BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146651.7 - phase: 0 /pseudo
(394 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC208420 homologue to UP|Q7XXR9 (Q7XXR9) Katanin, partial (79%) 519 e-148
TC204689 homologue to UP|Q9SEA8 (Q9SEA8) Salt-induced AAA-Type A... 225 2e-59
TC204690 homologue to UP|Q9SEA8 (Q9SEA8) Salt-induced AAA-Type A... 224 7e-59
TC204915 weakly similar to GB|AAH46286.1|28279482|BC046286 spast... 172 3e-43
TC204913 weakly similar to UP|SAP1_YEAST (P39955) SAP1 protein, ... 170 9e-43
TC219888 similar to UP|Q944N4 (Q944N4) Tobacco mosaic virus heli... 168 4e-42
TC216249 weakly similar to UP|SAP1_YEAST (P39955) SAP1 protein, ... 165 3e-41
TC216546 weakly similar to UP|SAP1_YEAST (P39955) SAP1 protein, ... 150 3e-39
TC206370 similar to UP|Q940D1 (Q940D1) At1g64110/F22C12_22, part... 158 5e-39
TC229555 similar to GB|AAM62497.1|21553404|AY085265 26S proteaso... 151 6e-37
TC206116 UP|CC48_SOYBN (P54774) Cell division cycle protein 48 h... 147 1e-35
BM527420 132 2e-31
TC225592 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 ... 128 4e-30
TC231817 homologue to UP|Q7XJI9 (Q7XJI9) Katanin, partial (21%) 127 9e-30
TC230208 similar to UP|Q6YUV9 (Q6YUV9) Transitional endoplasmic ... 122 3e-28
TC205434 homologue to UP|PRS6_ARATH (Q9SEI4) 26S protease regula... 122 3e-28
BI893296 similar to GP|21553404|gb 26S proteasome regulatory par... 119 2e-27
TC214213 homologue to UP|PRSA_BRACM (O23894) 26S protease regula... 118 4e-27
TC228291 homologue to UP|Q9FXT8 (Q9FXT8) 26S proteasome regulato... 117 9e-27
TC225681 homologue to UP|Q9SZD4 (Q9SZD4) 26S proteasome subunit ... 115 4e-26
>TC208420 homologue to UP|Q7XXR9 (Q7XXR9) Katanin, partial (79%)
Length = 1523
Score = 519 bits (1337), Expect = e-148
Identities = 282/406 (69%), Positives = 313/406 (76%), Gaps = 16/406 (3%)
Frame = +1
Query: 5 DEPMPTRWSFEEFKKYYDVRLGRKKLVENGENA----VSNGNSSG--IASNGNSHGKVTS 58
D+PMPTRWSF++FK YYD + GRKK+ ENG+ A VSNGNS I SNGN K S
Sbjct: 103 DDPMPTRWSFQDFKLYYDAKFGRKKVAENGDTATDKAVSNGNSVTVTIVSNGN---KRAS 273
Query: 59 DRAIYDQFQSQGQNPTHTNGFGPNGVDEKPKKSLLPPFESAEMRTLAESLSRDIIRGSPN 118
+ A+Y+QF+ +G N HTNGF P VDE+P+KSLLPPFESAEMR LAESLSRDIIRGSP+
Sbjct: 274 EMAVYEQFRGEGLNQIHTNGFVPTIVDERPQKSLLPPFESAEMRALAESLSRDIIRGSPD 453
Query: 119 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 178
VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE
Sbjct: 454 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 633
Query: 179 CNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRGEGRSEHE 238
C TTFFNISASS+VSKWRGDSEKLVKVLFELARHHAP+TIFLDEIDAIISQRGE RSEHE
Sbjct: 634 CKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHE 813
Query: 239 ASRRLKTELLIQMDGLARTDELVFVLAATNLPWELDAAMLRRLEKR-NQKQEEQCLRNSF 297
ASRRLKTELLIQMDGL +TDELVFVLAATNLPWELDAAMLRRLEKR E R +
Sbjct: 814 ASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPVARRAM 993
Query: 298 LCSLMRNRCP--------MIYWWTGQKDTQARIFAYFVKKQQCSH*DA**HNLNKNQMWC 349
L+ + ++ G + R+ Q + L ++Q
Sbjct: 994 FEELLPQQPDEEPIPYDILVDKTEGYSGSDIRLLCKETAMQPLRRLMS---QLEQSQDVV 1164
Query: 350 P-KKLPKVGPVVPEDVEAALRNTRPSAHLLAHKYDTFNADYGSQIL 394
P ++LPKVGP+ ED+E ALRNTRPSAHL AHKYD FNADYGSQIL
Sbjct: 1165PEEELPKVGPIKSEDIETALRNTRPSAHLHAHKYDKFNADYGSQIL 1302
>TC204689 homologue to UP|Q9SEA8 (Q9SEA8) Salt-induced AAA-Type ATPase,
partial (98%)
Length = 1726
Score = 225 bits (574), Expect = 2e-59
Identities = 109/188 (57%), Positives = 142/188 (74%)
Frame = +3
Query: 97 ESAEMRTLAESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWK 156
E E L L+ IIR PNVKW + GLE+AK+ L+EAV++P+K+P++FTG PW+
Sbjct: 498 EDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWR 677
Query: 157 GILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPA 216
LL+GPPGTGK+ LAKAVATE +TFF++S+S +VSKW G+SEKLV LFE+AR AP+
Sbjct: 678 AFLLYGPPGTGKSYLAKAVATEAESTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPS 857
Query: 217 TIFLDEIDAIISQRGEGRSEHEASRRLKTELLIQMDGLARTDELVFVLAATNLPWELDAA 276
IF+DEID++ QRGEG +E EASRR+KTELL+QM G+ D+ V VLAATN P+ LD A
Sbjct: 858 IIFIDEIDSLCGQRGEG-NESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQA 1034
Query: 277 MLRRLEKR 284
+ RR +KR
Sbjct: 1035IRRRFDKR 1058
>TC204690 homologue to UP|Q9SEA8 (Q9SEA8) Salt-induced AAA-Type ATPase,
partial (94%)
Length = 1630
Score = 224 bits (570), Expect = 7e-59
Identities = 107/188 (56%), Positives = 143/188 (75%)
Frame = +2
Query: 97 ESAEMRTLAESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWK 156
E E L L+ I+R PNVKW + GLE+AK+ L+EAV++P+K+P++FTG PW+
Sbjct: 449 EDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWR 628
Query: 157 GILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPA 216
LL+GPPGTGK+ LAKAVATE ++TFF++S+S +VSKW G+SEKLV LF++AR AP+
Sbjct: 629 AFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPS 808
Query: 217 TIFLDEIDAIISQRGEGRSEHEASRRLKTELLIQMDGLARTDELVFVLAATNLPWELDAA 276
IF+DEID++ QRGEG +E EASRR+KTELL+QM G+ D+ V VLAATN P+ LD A
Sbjct: 809 IIFVDEIDSLCGQRGEG-NESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQA 985
Query: 277 MLRRLEKR 284
+ RR +KR
Sbjct: 986 IRRRFDKR 1009
>TC204915 weakly similar to GB|AAH46286.1|28279482|BC046286 spastic
paraplegia 4 homolog {Mus musculus;} , partial (21%)
Length = 1470
Score = 172 bits (435), Expect = 3e-43
Identities = 93/169 (55%), Positives = 118/169 (69%), Gaps = 3/169 (1%)
Frame = +1
Query: 119 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVA 176
V ++ I LEN K LKE V++P++ P+ F L P KGILLFGPPGTGKTMLAKAVA
Sbjct: 271 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLAKPCKGILLFGPPGTGKTMLAKAVA 450
Query: 177 TECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRGEGRSE 236
TE F NIS SSI SKW G+ EK VK +F LA AP+ IF+DE+D+++ +R E SE
Sbjct: 451 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR-ENPSE 627
Query: 237 HEASRRLKTELLIQMDGLARTD-ELVFVLAATNLPWELDAAMLRRLEKR 284
HEA R++K E ++ DGL D E V VLAATN P++LD A++RRL +R
Sbjct: 628 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRR 774
>TC204913 weakly similar to UP|SAP1_YEAST (P39955) SAP1 protein, partial
(14%)
Length = 1080
Score = 170 bits (431), Expect = 9e-43
Identities = 91/169 (53%), Positives = 117/169 (68%), Gaps = 3/169 (1%)
Frame = +3
Query: 119 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVA 176
V ++ I LEN K LKE V++P++ P+ F L P KGILLFGPPGTGKTMLAKAVA
Sbjct: 300 VTFDDIGALENVKETLKELVMLPLQRPELFGKGQLAKPCKGILLFGPPGTGKTMLAKAVA 479
Query: 177 TECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRGEGRSE 236
TE F NIS SSI SKW G+ EK VK +F LA AP+ IF+DE+D+++ +R E E
Sbjct: 480 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR-ENPGE 656
Query: 237 HEASRRLKTELLIQMDGLARTD-ELVFVLAATNLPWELDAAMLRRLEKR 284
HEA R++K E ++ DGL D E + VLAATN P++LD A++RRL +R
Sbjct: 657 HEAMRKMKNEFMVNWDGLRTKDKERILVLAATNRPFDLDEAVIRRLPRR 803
>TC219888 similar to UP|Q944N4 (Q944N4) Tobacco mosaic virus helicase
domain-binding protein (Fragment), partial (50%)
Length = 1119
Score = 168 bits (425), Expect = 4e-42
Identities = 89/158 (56%), Positives = 117/158 (73%), Gaps = 1/158 (0%)
Frame = +3
Query: 128 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNIS 187
E AK+ L E V++P K FTGL P +G+LLFGPPG GKTMLAKAVA+E TFFN++
Sbjct: 3 EKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVT 182
Query: 188 ASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRGEGRSEHEASRRLKTEL 247
A+S+ SKW G++EKLV+ LF +A P+ IF+DEID+I+S R +E++ASRRLK+E
Sbjct: 183 AASLTSKWVGEAEKLVRTLFMVAISRQPSVIFIDEIDSIMSTR--LANENDASRRLKSEF 356
Query: 248 LIQMDGL-ARTDELVFVLAATNLPWELDAAMLRRLEKR 284
LIQ DG+ + D++V V+ ATN P ELD A+LRRL KR
Sbjct: 357 LIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKR 470
>TC216249 weakly similar to UP|SAP1_YEAST (P39955) SAP1 protein, partial (14%)
Length = 2222
Score = 165 bits (418), Expect = 3e-41
Identities = 91/181 (50%), Positives = 122/181 (67%), Gaps = 4/181 (2%)
Frame = +2
Query: 108 LSRDIIRGSP-NVKWESIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPP 164
L D+I S +V ++ I LE K LKE V++P++ P+ F L P KGILLFGPP
Sbjct: 920 LLADVIPPSDIDVTFDDIGALEKVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 1099
Query: 165 GTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEID 224
GTGKTMLAKA+ATE F NIS SSI SKW G+ EK VK +F LA +P+ IF+DE+D
Sbjct: 1100 GTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVD 1279
Query: 225 AIISQRGEGRSEHEASRRLKTELLIQMDGL-ARTDELVFVLAATNLPWELDAAMLRRLEK 283
+++ +R E EHEA R++K E ++ DGL + E V VLAATN P++LD A++RR+ +
Sbjct: 1280 SMLGRR-ENPGEHEAMRKMKNEFMVNWDGLRTKETERVLVLAATNRPFDLDEAVIRRMPR 1456
Query: 284 R 284
R
Sbjct: 1457 R 1459
>TC216546 weakly similar to UP|SAP1_YEAST (P39955) SAP1 protein, partial
(14%)
Length = 1321
Score = 150 bits (378), Expect(2) = 3e-39
Identities = 78/132 (59%), Positives = 96/132 (72%), Gaps = 1/132 (0%)
Frame = +3
Query: 154 PWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHH 213
P KGILLFGPPGTGKTMLAKAVATE F NIS SSI SKW G+ EK VK +F LA
Sbjct: 138 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI 317
Query: 214 APATIFLDEIDAIISQRGEGRSEHEASRRLKTELLIQMDGLARTD-ELVFVLAATNLPWE 272
AP+ IF+DE+D+++ +R E EHEA R++K E ++ DGL D E V VLAATN P++
Sbjct: 318 APSVIFVDEVDSMLGRR-ENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFD 494
Query: 273 LDAAMLRRLEKR 284
LD A++RRL +R
Sbjct: 495 LDEAVIRRLPRR 530
Score = 30.0 bits (66), Expect(2) = 3e-39
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 119 VKWESIKGLENAKRLLKEAVVMPIKYPKYF 148
V ++ I LEN K LKE V++P++ P+ F
Sbjct: 26 VTFDDIGALENVKDTLKELVMLPLQRPELF 115
>TC206370 similar to UP|Q940D1 (Q940D1) At1g64110/F22C12_22, partial (38%)
Length = 1502
Score = 158 bits (399), Expect = 5e-39
Identities = 84/168 (50%), Positives = 113/168 (67%), Gaps = 2/168 (1%)
Frame = +2
Query: 119 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTG-LLSPWKGILLFGPPGTGKTMLAKAVAT 177
V + I L+ K L+E V++P++ P F G LL P +GILLFGPPGTGKTMLAKA+A
Sbjct: 53 VTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN 232
Query: 178 ECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRGEGRSEH 237
E +F N+S S+I SKW G+ EK V+ LF LA AP IF+DE+D+++ QR EH
Sbjct: 233 EAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTR-VGEH 409
Query: 238 EASRRLKTELLIQMDG-LARTDELVFVLAATNLPWELDAAMLRRLEKR 284
EA R++K E + DG L +E + VLAATN P++LD A++RR E+R
Sbjct: 410 EAMRKIKNEFMTHWDGLLTGPNEQILVLAATNRPFDLDEAIIRRFERR 553
>TC229555 similar to GB|AAM62497.1|21553404|AY085265 26S proteasome
regulatory particle chain RPT6-like protein {Arabidopsis
thaliana;} , partial (85%)
Length = 1155
Score = 151 bits (381), Expect = 6e-37
Identities = 89/199 (44%), Positives = 124/199 (61%), Gaps = 19/199 (9%)
Frame = +2
Query: 102 RTLAESLSRDIIRGSP---------------NVKWESIKGLENAKRLLKEAVVMPIKYPK 146
+ +A+ L R +I+ +P +V++ SI GLE K+ L E V++P+K P
Sbjct: 137 KEIAKRLGRPLIQTNPYEDVIACDIINPDHIDVEFNSIGGLETIKQALFELVILPLKRPD 316
Query: 147 YFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVK 204
F+ LL P KG+LL+GPPGTGKTMLAKA+A E F N+ S+++SKW GD++KLV
Sbjct: 317 LFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESRAVFINVRISNLMSKWFGDAQKLVA 496
Query: 205 VLFELARHHAPATIFLDEIDAIISQRGEGRSEHEASRRLKTELLIQMDGLARTDE--LVF 262
+F LA PA IF+DE+D+ + +R ++HEA +KTE + DG TD+ V
Sbjct: 497 AVFSLAYKLQPAIIFIDEVDSFLGKR--RGTDHEAMLNMKTEFMALWDGFT-TDQNAQVM 667
Query: 263 VLAATNLPWELDAAMLRRL 281
VLAATN P ELD A+LRRL
Sbjct: 668 VLAATNRPSELDEAILRRL 724
>TC206116 UP|CC48_SOYBN (P54774) Cell division cycle protein 48 homolog
(Valosin containing protein homolog) (VCP), complete
Length = 2583
Score = 147 bits (370), Expect = 1e-35
Identities = 78/186 (41%), Positives = 118/186 (62%), Gaps = 2/186 (1%)
Frame = +1
Query: 96 FESAEMRTLAESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSP 154
F++A + T S R+ + PNV WE I GLEN KR L+E V P+++P+ F +SP
Sbjct: 1387 FQTA-LGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSP 1563
Query: 155 WKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHA 214
KG+L +GPPG GKT+LAKA+A EC F ++ +++ W G+SE V+ +F+ AR A
Sbjct: 1564 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSA 1743
Query: 215 PATIFLDEIDAIISQRGEGRSE-HEASRRLKTELLIQMDGLARTDELVFVLAATNLPWEL 273
P +F DE+D+I +QRG + A+ R+ +LL +MDG++ + VF++ ATN P +
Sbjct: 1744 PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AKKTVFIIGATNRPDII 1920
Query: 274 DAAMLR 279
D A+LR
Sbjct: 1921 DPALLR 1938
Score = 119 bits (297), Expect = 3e-27
Identities = 68/175 (38%), Positives = 107/175 (60%), Gaps = 1/175 (0%)
Frame = +1
Query: 106 ESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPP 164
E L R+ V ++ + G+ ++E V +P+++P+ F + + P KGILL+GPP
Sbjct: 595 EPLKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPP 774
Query: 165 GTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEID 224
G+GKT++A+AVA E FF I+ I+SK G+SE ++ FE A +AP+ IF+DEID
Sbjct: 775 GSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEID 954
Query: 225 AIISQRGEGRSEHEASRRLKTELLIQMDGLARTDELVFVLAATNLPWELDAAMLR 279
+I +R ++ E RR+ ++LL MDGL ++ V V+ ATN P +D A+ R
Sbjct: 955 SIAPKR--EKTHGEVERRIVSQLLTLMDGL-KSRAHVIVIGATNRPNSIDPALRR 1110
>BM527420
Length = 420
Score = 132 bits (333), Expect = 2e-31
Identities = 68/112 (60%), Positives = 83/112 (73%), Gaps = 8/112 (7%)
Frame = +3
Query: 5 DEPMPTRWSFEEFKKYYDVRLGRKKLVENGENA----VSNGNSSG----IASNGNSHGKV 56
D+PMPTRWSF++FK YD + GRKK+ ENG++A VSNGN + I SNGN K
Sbjct: 93 DDPMPTRWSFQDFKLCYDAKFGRKKVAENGDDAAGKAVSNGNGNSVTVAIVSNGN---KR 263
Query: 57 TSDRAIYDQFQSQGQNPTHTNGFGPNGVDEKPKKSLLPPFESAEMRTLAESL 108
S+ A+Y+QF+S+GQN HTNGF P DE+P+KSLLPPFESAEMR LAESL
Sbjct: 264 ASEMAVYEQFRSEGQNQIHTNGFVPTLTDERPQKSLLPPFESAEMRALAESL 419
>TC225592 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {Arabidopsis
thaliana;} , partial (94%)
Length = 1612
Score = 128 bits (322), Expect = 4e-30
Identities = 73/167 (43%), Positives = 109/167 (64%), Gaps = 4/167 (2%)
Frame = +3
Query: 117 PNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 175
P+ ++ I GL+ + +KE + +PIK+P+ F L ++ KG+LL+GPPGTGKT+LA+AV
Sbjct: 564 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAV 743
Query: 176 ATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQR---GE 232
A + TF +S S +V K+ G+ ++V+ LF +AR HAP+ IF+DEID+I S R G
Sbjct: 744 AHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS 923
Query: 233 GRSEHEASRRLKTELLIQMDGLARTDELVFVLAATNLPWELDAAMLR 279
G + E R + ELL Q+DG +++ + VL ATN LD A+LR
Sbjct: 924 GNGDSEVQRTM-LELLNQLDGFEASNK-IKVLMATNRIDILDQALLR 1058
>TC231817 homologue to UP|Q7XJI9 (Q7XJI9) Katanin, partial (21%)
Length = 430
Score = 127 bits (319), Expect = 9e-30
Identities = 67/158 (42%), Positives = 94/158 (59%)
Frame = +2
Query: 37 AVSNGNSSGIASNGNSHGKVTSDRAIYDQFQSQGQNPTHTNGFGPNGVDEKPKKSLLPPF 96
+ + G G AS+G + T+ A+ TNG +G +K + P
Sbjct: 17 STTTGKKGGAASSGKASKTDTAAAAV-------------TNGDAEDGKSKKLQYEGPDP- 154
Query: 97 ESAEMRTLAESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWK 156
LA L RD++ SP V+W+ + GL AKRLL+EAVV+P+ P+YF G+ PWK
Sbjct: 155 ------ELAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWK 316
Query: 157 GILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSK 194
G+L+FGPP TGKT+LAK VATEC TTFFN+S++++ SK
Sbjct: 317 GVLMFGPPRTGKTLLAKTVATECGTTFFNVSSATLASK 430
>TC230208 similar to UP|Q6YUV9 (Q6YUV9) Transitional endoplasmic reticulum
ATPase-like, partial (45%)
Length = 642
Score = 122 bits (306), Expect = 3e-28
Identities = 65/150 (43%), Positives = 94/150 (62%), Gaps = 2/150 (1%)
Frame = +1
Query: 80 GPNGVDEKPKKSLLPPFESAEMRTLAESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVV 139
G + KP +SL A+ + +S + G VK++ I LE+ K+ L E V+
Sbjct: 202 GQETMSRKPSQSLK---NLAKDEFESNFISAVVPPGEIGVKFDDIGALEDVKKALNELVI 372
Query: 140 MPIKYPKYFT--GLLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRG 197
+P++ P+ F+ LL P KGILLFGPPGTGKT+LAKA+ATE F +I+ S++ SKW G
Sbjct: 373 LPMRRPELFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFG 552
Query: 198 DSEKLVKVLFELARHHAPATIFLDEIDAII 227
D+EKL K LF A AP +F+DE+D+++
Sbjct: 553 DAEKLTKALFSFASKLAPVIVFVDEVDSLL 642
>TC205434 homologue to UP|PRS6_ARATH (Q9SEI4) 26S protease regulatory subunit
6B homolog (26S proteasome AAA-ATPase subunit RPT3)
(Regulatory particle triple-A ATPase subunit 3), partial
(96%)
Length = 1573
Score = 122 bits (306), Expect = 3e-28
Identities = 74/197 (37%), Positives = 119/197 (59%), Gaps = 4/197 (2%)
Frame = +1
Query: 92 LLPPFESAEMRTLAESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL 151
+LPP + + L++S P+V + I G + K+ ++EAV +P+ + + + +
Sbjct: 508 VLPPEADSSISLLSQS-------EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQI 666
Query: 152 -LSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELA 210
+ P +G+LL+GPPGTGKTMLAKAVA F + S V K+ G+ ++V+ +F LA
Sbjct: 667 GIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA 846
Query: 211 RHHAPATIFLDEIDAIISQRGEGRSEHEAS-RRLKTELLIQMDGLARTDELVFVLAATNL 269
+ +APA IF+DE+DAI + R + ++ + +R+ ELL QMDG +T V V+ ATN
Sbjct: 847 KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVN-VKVIMATNR 1023
Query: 270 PWELDAAMLR--RLEKR 284
LD A+LR RL+++
Sbjct: 1024ADTLDPALLRPGRLDRK 1074
>BI893296 similar to GP|21553404|gb 26S proteasome regulatory particle chain
RPT6-like protein {Arabidopsis thaliana}, partial (32%)
Length = 398
Score = 119 bits (299), Expect = 2e-27
Identities = 64/135 (47%), Positives = 86/135 (63%), Gaps = 2/135 (1%)
Frame = +1
Query: 127 LENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECNTTFF 184
LE K L E V++P+K P F+ LL P KG+LL+GPPGTGKTMLAKA+A E F
Sbjct: 1 LETIKLALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFI 180
Query: 185 NISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRGEGRSEHEASRRLK 244
N+ ++SKW GD++KLV +F LA PA IF+DE+D+ + QR ++HEA +K
Sbjct: 181 NVRIFFLMSKWFGDAQKLVTAIFXLAHKLQPAIIFIDEVDSFLGQR--RTTDHEALLNMK 354
Query: 245 TELLIQMDGLARTDE 259
TE + DG TD+
Sbjct: 355 TEFMALWDGFT-TDQ 396
>TC214213 homologue to UP|PRSA_BRACM (O23894) 26S protease regulatory subunit
6A homolog (TAT-binding protein homolog 1) (TBP-1),
partial (64%)
Length = 1086
Score = 118 bits (296), Expect = 4e-27
Identities = 70/172 (40%), Positives = 108/172 (62%), Gaps = 4/172 (2%)
Frame = +1
Query: 117 PNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 175
P + I GLE + L EA+V+P+ + + F L + P KG+LL+GPPGTGKT++A+A
Sbjct: 34 PTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARAC 213
Query: 176 ATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRGEGR- 234
A + N TF ++ +V + GD KLV+ F+LA+ +P IF+DEIDAI ++R +
Sbjct: 214 AAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV 393
Query: 235 SEHEASRRLKTELLIQMDGLARTDELVFVLAATNLPWELDAAMLR--RLEKR 284
S +R ELL Q+DG + +D+ + V+AATN LD A++R RL+++
Sbjct: 394 SGDREVQRTMLELLNQLDGFS-SDDRIKVIAATNRADILDPALMRSGRLDRK 546
>TC228291 homologue to UP|Q9FXT8 (Q9FXT8) 26S proteasome regulatory particle
triple-A ATPase subunit4, partial (62%)
Length = 1079
Score = 117 bits (293), Expect = 9e-27
Identities = 65/157 (41%), Positives = 102/157 (64%), Gaps = 4/157 (2%)
Frame = +3
Query: 132 RLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASS 190
R L+E++ +P+ P+ F + + P KG+LL+GPPGTGKT+LA+A+A+ F + +S+
Sbjct: 6 RELRESIELPLMNPELFIRVGIKPPKGVLLYGPPGTGKTLLARAIASNIEANFLKVVSSA 185
Query: 191 IVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQR-GEGRSEHEASRRLKTELLI 249
I+ K+ G+S +L++ +F AR H P IF+DEIDAI +R EG S +R ELL
Sbjct: 186 IIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 365
Query: 250 QMDGLARTDELVFVLAATNLPWELDAAMLR--RLEKR 284
Q+DG + ++ ++ ATN P LD A+LR RL+++
Sbjct: 366 QLDGFDQLGKVKMIM-ATNRPDVLDPALLRPGRLDRK 473
>TC225681 homologue to UP|Q9SZD4 (Q9SZD4) 26S proteasome subunit 4-like
protein (26S proteasome subunit AtRPT2a), partial (93%)
Length = 1433
Score = 115 bits (287), Expect = 4e-26
Identities = 68/170 (40%), Positives = 105/170 (61%), Gaps = 3/170 (1%)
Frame = +1
Query: 113 IRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTML 171
+ +P + I GL+ + +KEAV +P+ +P+ + + + P KG++L+G PGTGKT+L
Sbjct: 442 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLL 621
Query: 172 AKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRG 231
AKAVA + TF + S ++ K+ GD KLV+ LF +A +P+ +F+DEIDA+ ++R
Sbjct: 622 AKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRY 801
Query: 232 EGRSEHEAS-RRLKTELLIQMDGL-ARTDELVFVLAATNLPWELDAAMLR 279
+ S E +R ELL Q+DG +R D V V+ ATN LD A+LR
Sbjct: 802 DAHSGGEREIQRTMLELLNQLDGFDSRGD--VKVILATNRIESLDPALLR 945
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.136 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,975,550
Number of Sequences: 63676
Number of extensions: 224878
Number of successful extensions: 1262
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of query: 394
length of database: 12,639,632
effective HSP length: 99
effective length of query: 295
effective length of database: 6,335,708
effective search space: 1869033860
effective search space used: 1869033860
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Medicago: description of AC146651.7