BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146651.2 - phase: 0
(384 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC229063 similar to GB|AAO64869.1|29028980|BT005934 At2g19260 {A... 55 7e-08
TC223468 similar to GB|AAS92337.1|46402470|BT012421 At5g24330 {A... 51 1e-06
TC229499 49 5e-06
TC223375 weakly similar to UP|Q9Y3Q5 (Q9Y3Q5) PLU-1 protein, par... 44 2e-04
BI786400 40 0.002
TC206439 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding prot... 38 0.009
TC214689 homologue to UP|Q40359 (Q40359) Alfin-1, partial (95%) 37 0.011
TC229493 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding prot... 37 0.020
TC211865 weakly similar to UP|Q7F266 (Q7F266) Nipped-B gene prod... 36 0.033
TC206438 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding prot... 35 0.044
TC205042 similar to UP|Q9FFF5 (Q9FFF5) Nucleic acid binding prot... 35 0.057
TC205040 similar to UP|Q9FFF5 (Q9FFF5) Nucleic acid binding prot... 34 0.13
TC219399 weakly similar to GB|AAP68251.1|31711790|BT008812 At2g3... 33 0.22
AW755354 33 0.22
TC205039 similar to UP|Q9FFF5 (Q9FFF5) Nucleic acid binding prot... 32 0.37
TC222777 weakly similar to GB|AAP68251.1|31711790|BT008812 At2g3... 32 0.37
TC208334 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding prot... 32 0.48
AI965377 similar to GP|21592780|gb| nucleic acid binding protein... 32 0.48
TC229702 32 0.48
TC219840 similar to UP|Q9M2B4 (Q9M2B4) Nucleic acid binding prot... 32 0.63
>TC229063 similar to GB|AAO64869.1|29028980|BT005934 At2g19260 {Arabidopsis
thaliana;} , partial (10%)
Length = 1656
Score = 54.7 bits (130), Expect = 7e-08
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Frame = +1
Query: 84 CVIC---DLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSCFEENDQLKPLNNLDS 140
C IC D N+L CD C YHL C +P LK++P+ +W C SC + ++ + S
Sbjct: 709 CKICGDLDNSLNMLLCDHCEDAYHLSCYNPRLKKLPIDEWFCHSCLIKRQKILKETVIRS 888
Query: 141 IS---RRARTKTVPVKSKAGVNPVNL 163
S + +T PV KA +NP+ L
Sbjct: 889 PSIHNELGKCRTAPV--KAELNPILL 960
>TC223468 similar to GB|AAS92337.1|46402470|BT012421 At5g24330 {Arabidopsis
thaliana;} , partial (33%)
Length = 507
Score = 50.8 bits (120), Expect = 1e-06
Identities = 21/43 (48%), Positives = 24/43 (54%)
Frame = +2
Query: 93 LLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSCFEENDQLKPL 135
L+ CD C R YHL CL P L +P G W CPSC + PL
Sbjct: 131 LILCDKCDRGYHLFCLRPILPSVPKGSWFCPSCSNHKPKSFPL 259
>TC229499
Length = 915
Score = 48.5 bits (114), Expect = 5e-06
Identities = 22/58 (37%), Positives = 29/58 (49%), Gaps = 5/58 (8%)
Frame = +1
Query: 73 KKKGHDGYFYECV----ICDLGGN-LLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSC 125
K GH Y C+ + D N ++ CD+C YH+ C+ PP IP GKW C C
Sbjct: 313 KSYGHCWYCPSCICQVCLTDKDDNKIVLCDACDHAYHVYCMKPPQNSIPKGKWFCIKC 486
>TC223375 weakly similar to UP|Q9Y3Q5 (Q9Y3Q5) PLU-1 protein, partial (3%)
Length = 690
Score = 43.5 bits (101), Expect = 2e-04
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 93 LLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSC 125
++ CD C YH+ C+ PP IP G W C C
Sbjct: 39 IVLCDGCDHAYHIYCMKPPRTSIPRGNWFCRKC 137
>BI786400
Length = 367
Score = 39.7 bits (91), Expect = 0.002
Identities = 29/108 (26%), Positives = 44/108 (39%), Gaps = 5/108 (4%)
Frame = +3
Query: 84 CVICDLG---GNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSCFEE--NDQLKPLNNL 138
C++C L L C +C +HL CL P + W CP C + + + P +L
Sbjct: 30 CMLCKLKPSPSQTLSCGTCATPWHLPCLPSPPLSLSDSHWDCPDCSDTFCHHPVAPTAHL 209
Query: 139 DSISRRARTKTVPVKSKAGVNPVNLEKVSGIFGNKHISKKRSTKAKSI 186
S + T + + L + G+ H SK + TKAK I
Sbjct: 210 VSAIHAIQADTSLTDQQKAIKRQQL-----LAGSAHPSKDK-TKAKDI 335
>TC206439 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding protein-like,
partial (60%)
Length = 714
Score = 37.7 bits (86), Expect = 0.009
Identities = 31/118 (26%), Positives = 52/118 (43%), Gaps = 17/118 (14%)
Frame = +3
Query: 34 SGKEQSNGKEDNSVASESS-RSASAKRMLKTEEGTAQFSSKKKGHDGYFYECVICDLGGN 92
+G + GKE +SV++ SS +S S + + T SK + +G E D G
Sbjct: 147 TGMXKXXGKEKSSVSNHSSTKSKSNSKRGSESKYTKAMQSKDEDDEGVGVEEEDEDEHGE 326
Query: 93 LLC---------------CDSCPRTYHLQCLD-PPLKRIPMGKWQCPSCFEENDQLKP 134
LC CD C + +H +C+ P + + +++CPSC N + +P
Sbjct: 327 TLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSC--SNKRARP 494
>TC214689 homologue to UP|Q40359 (Q40359) Alfin-1, partial (95%)
Length = 1352
Score = 37.4 bits (85), Expect = 0.011
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 7/118 (5%)
Frame = +2
Query: 32 QSSGKEQSNGKEDNSVASESSRSASAKRMLKTEEGTAQFSSKKKGHDGYFYECVICDLGG 91
Q K +S+GK S + SA + E G +++ D C C G
Sbjct: 779 QQCSKCKSSGKSHQSESQAKGMKMSAPPKEEDESG------EEEEDDEQGATCGAC--GD 934
Query: 92 NL------LCCDSCPRTYHLQCLD-PPLKRIPMGKWQCPSCFEENDQLKPLNNLDSIS 142
N +CCD C R +H +C+ P K + +++CPSC + ++ L SI+
Sbjct: 935 NYGTDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRVRV*KL*TFGSIT 1108
>TC229493 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding protein-like,
partial (92%)
Length = 1103
Score = 36.6 bits (83), Expect = 0.020
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Frame = +2
Query: 34 SGKEQSNGKEDNSVASESS-RSASAKRMLKTEEGTAQFSSKKKGH------DGYFYECVI 86
+G + KE +S+++ SS +S S + +E G +K + D +E +
Sbjct: 578 TGSAKKQTKEKSSISNHSSNKSKSGSKGRGSESGKYSKETKDEEEEVLDEEDDEEHEETL 757
Query: 87 CDLGGN-------LLCCDSCPRTYHLQCLD-PPLKRIPMGKWQCPSCFEENDQLKP 134
C G +CCD C + +H +C+ P + + +++CPSC N + +P
Sbjct: 758 CGACGEHYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSC--SNKRARP 919
>TC211865 weakly similar to UP|Q7F266 (Q7F266) Nipped-B gene product-like
protein, partial (6%)
Length = 871
Score = 35.8 bits (81), Expect = 0.033
Identities = 16/45 (35%), Positives = 20/45 (43%), Gaps = 3/45 (6%)
Frame = +2
Query: 84 CVICDLGG---NLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSC 125
C +C LGG NL C C R +H CL + W C +C
Sbjct: 143 CCVC-LGGRVENLFICHGCQRLFHADCLGIKEHEVSSRNWSCQTC 274
>TC206438 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding protein-like,
partial (93%)
Length = 1133
Score = 35.4 bits (80), Expect = 0.044
Identities = 29/121 (23%), Positives = 53/121 (42%), Gaps = 20/121 (16%)
Frame = +3
Query: 34 SGKEQSNGKEDNSVASESS-RSASAKRMLKTEEGTAQFSSKKKGHDGYF----------- 81
+G + GKE +SV++ SS +S S + + T SK + +G
Sbjct: 543 TGMAKKQGKEKSSVSNHSSTKSKSNSKRGSESKYTKAMQSKDEDDEGGAGLGLEDEEEEE 722
Query: 82 YECVICDLGGNL-------LCCDSCPRTYHLQCLD-PPLKRIPMGKWQCPSCFEENDQLK 133
+ +C G +CCD C + +H +C+ P + + +++CPSC N + +
Sbjct: 723 HGDTLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSC--SNKRAR 896
Query: 134 P 134
P
Sbjct: 897 P 899
>TC205042 similar to UP|Q9FFF5 (Q9FFF5) Nucleic acid binding protein-like,
partial (49%)
Length = 676
Score = 35.0 bits (79), Expect = 0.057
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Frame = +3
Query: 49 SESSRSASAKRMLKTEEGTAQFSSKKKGHDGY------FYECVICDLGGNL------LCC 96
S S SAKR + +G + S+ K +GY E + GGN +CC
Sbjct: 102 SGSKXRGSAKR---SSDGQVK-SNPKFVDEGYEEDEDEHNETLCGSCGGNYNADEFWICC 269
Query: 97 DSCPRTYHLQCLD-PPLKRIPMGKWQCPSC 125
D C R +H +C+ P K + +++CPSC
Sbjct: 270 DICERWFHGKCVKITPAKAESIKQYKCPSC 359
>TC205040 similar to UP|Q9FFF5 (Q9FFF5) Nucleic acid binding protein-like,
partial (84%)
Length = 1092
Score = 33.9 bits (76), Expect = 0.13
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Frame = +2
Query: 43 EDNSVASESSRSASAKRMLKTEEGTAQFSSKKKGHDGYFYE--------CVICDLGGNL- 93
+D A S+S + + ++ +G + S+ K DGY E C C GGN
Sbjct: 554 KDKPTADSGSKSRGSTK--RSSDGQVK-SNPKFADDGYEDEDDEHSETLCGSC--GGNYN 718
Query: 94 -----LCCDSCPRTYHLQCLD-PPLKRIPMGKWQCPSC 125
+ CD C R +H +C+ P K + +++CPSC
Sbjct: 719 ADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSC 832
>TC219399 weakly similar to GB|AAP68251.1|31711790|BT008812 At2g36720
{Arabidopsis thaliana;} , partial (29%)
Length = 1270
Score = 33.1 bits (74), Expect = 0.22
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +1
Query: 93 LLCCDSCPRTYHLQCLDPP----LKRIPMGKWQC 122
++ CD C + YH+ CL LK +P G W C
Sbjct: 256 IILCDQCEKEYHVGCLRDHKMAYLKELPEGNWLC 357
>AW755354
Length = 436
Score = 33.1 bits (74), Expect = 0.22
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 94 LCCDSCPRTYHLQCLDPPLKRI 115
L CDSC YH+ C++P +K I
Sbjct: 357 LVCDSCEEIYHVSCIEPAVKEI 422
>TC205039 similar to UP|Q9FFF5 (Q9FFF5) Nucleic acid binding protein-like,
partial (95%)
Length = 1243
Score = 32.3 bits (72), Expect = 0.37
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Frame = +3
Query: 43 EDNSVASESSRSASAKRMLKTEEGTAQFSSKKKGHDGYFYE--------CVICDLGGNL- 93
+D A S+S + + ++ +G + S+ K +GY E C C GGN
Sbjct: 564 KDKPTADSGSKSRGSTK--RSSDGQVK-SNPKFADEGYEDEDDEHSETLCGSC--GGNYN 728
Query: 94 -----LCCDSCPRTYHLQCLD-PPLKRIPMGKWQCPSC 125
+ CD C R +H +C+ P K + +++CPSC
Sbjct: 729 ADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSC 842
>TC222777 weakly similar to GB|AAP68251.1|31711790|BT008812 At2g36720
{Arabidopsis thaliana;} , partial (26%)
Length = 1071
Score = 32.3 bits (72), Expect = 0.37
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +1
Query: 93 LLCCDSCPRTYHLQCLDPP----LKRIPMGKWQC 122
++ CD C + YH+ CL LK +P G W C
Sbjct: 127 IIICDQCEKEYHVGCLRDHKMAYLKELPEGDWFC 228
>TC208334 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding protein-like,
partial (86%)
Length = 1578
Score = 32.0 bits (71), Expect = 0.48
Identities = 13/42 (30%), Positives = 25/42 (58%), Gaps = 1/42 (2%)
Frame = +2
Query: 94 LCCDSCPRTYHLQCLD-PPLKRIPMGKWQCPSCFEENDQLKP 134
+CCD C + +H +C+ P + + +++CPSC N + +P
Sbjct: 797 ICCDICEKWFHGKCVKITPARAEHIKQYKCPSC--SNKRARP 916
>AI965377 similar to GP|21592780|gb| nucleic acid binding protein-like
{Arabidopsis thaliana}, partial (25%)
Length = 380
Score = 32.0 bits (71), Expect = 0.48
Identities = 13/42 (30%), Positives = 25/42 (58%), Gaps = 1/42 (2%)
Frame = +2
Query: 94 LCCDSCPRTYHLQCLD-PPLKRIPMGKWQCPSCFEENDQLKP 134
+CCD C + +H +C+ P + + +++CPSC N + +P
Sbjct: 86 ICCDICEKWFHGKCVKITPARAEHIKQYKCPSC--SNKRARP 205
>TC229702
Length = 449
Score = 32.0 bits (71), Expect = 0.48
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = +2
Query: 93 LLCCDSCPRTYHLQCLD----PPLKRIPMGKWQC 122
++ CD C + YH+ CL L+++P G W C
Sbjct: 101 VIICDQCEKEYHVGCLKEHNMENLEKLPEGNWFC 202
>TC219840 similar to UP|Q9M2B4 (Q9M2B4) Nucleic acid binding protein-like,
partial (41%)
Length = 622
Score = 31.6 bits (70), Expect = 0.63
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 94 LCCDSCPRTYHLQCLD-PPLKRIPMGKWQCPSC 125
+CCD C + +H +C+ P + + +++CPSC
Sbjct: 213 ICCDICEKWFHGKCVKITPARAEHIKQYKCPSC 311
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.311 0.129 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,652,447
Number of Sequences: 63676
Number of extensions: 219748
Number of successful extensions: 1095
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of query: 384
length of database: 12,639,632
effective HSP length: 99
effective length of query: 285
effective length of database: 6,335,708
effective search space: 1805676780
effective search space used: 1805676780
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Medicago: description of AC146651.2