BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146632.1 + phase: 0
(432 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC227892 similar to UP|Q94AB4 (Q94AB4) AT3g13340/MDC11_13, parti... 458 e-129
TC226875 similar to UP|Q94JT6 (Q94JT6) At1g78070/F28K19_28, part... 367 e-126
TC227649 weakly similar to UP|Q9LG00 (Q9LG00) F20N2.10, partial ... 368 e-102
TC227891 similar to UP|Q94AB4 (Q94AB4) AT3g13340/MDC11_13, parti... 314 6e-86
CO978788 256 1e-68
TC227650 similar to UP|Q9LG00 (Q9LG00) F20N2.10, partial (28%) 246 1e-65
TC220623 similar to UP|Q94AB4 (Q94AB4) AT3g13340/MDC11_13, parti... 218 5e-57
BU764216 weakly similar to GP|15081811|gb| AT3g13340/MDC11_13 {A... 155 3e-38
BM143141 similar to GP|13937195|gb| At1g78070/F28K19_28 {Arabido... 127 1e-29
BI699099 similar to GP|15081811|gb AT3g13340/MDC11_13 {Arabidops... 125 4e-29
BG406474 77 2e-22
BG882640 similar to GP|13937195|gb| At1g78070/F28K19_28 {Arabido... 82 4e-16
TC227890 similar to UP|Q94AB4 (Q94AB4) AT3g13340/MDC11_13, parti... 82 5e-16
BF070150 57 7e-13
TC223785 weakly similar to UP|Q9LG00 (Q9LG00) F20N2.10, partial ... 70 1e-12
TC232885 weakly similar to UP|Q94JT6 (Q94JT6) At1g78070/F28K19_2... 62 4e-10
BG882410 59 3e-09
AI973624 58 7e-09
TC220739 weakly similar to UP|PRP4_HUMAN (O43172) U4/U6 small nu... 50 2e-06
TC228105 similar to GB|AAP37692.1|30725340|BT008333 At4g29830 {A... 50 3e-06
>TC227892 similar to UP|Q94AB4 (Q94AB4) AT3g13340/MDC11_13, partial (68%)
Length = 1179
Score = 458 bits (1178), Expect = e-129
Identities = 218/305 (71%), Positives = 253/305 (82%)
Frame = +3
Query: 125 SKHDVYLVSNYSIKHWSSLSGNLSEIINFLGHVAPTEVLQCAGNQMEGFSQTQISTLAVK 184
SKHDVYLVSNYSI HWSSL+ SE++N GHVAP E + G+ +EGF+QTQISTLAV+
Sbjct: 3 SKHDVYLVSNYSIVHWSSLTSKRSEVLNVSGHVAPCE--KHPGSLLEGFTQTQISTLAVR 176
Query: 185 DNFLVAGGFQGELTCKRLDKKGVSFCTRTTHDDNAITNAVEIYESLSGATHFIAANNDSG 244
DN L+AGGFQGEL CK LD+ GVSFCTRTT++DNAITNAVEIYE SGA HF+A+NNDSG
Sbjct: 177 DNLLIAGGFQGELICKYLDRPGVSFCTRTTYEDNAITNAVEIYEHPSGAVHFMASNNDSG 356
Query: 245 VREYDIEKFQLLNQLHFPWPVNHTSISPDRKLMTVVGDNLEGLLVDPQNGKTVATLSGHQ 304
VR++D+E+FQL FPWPVNHTS+SPD KL+ VVGDN +GLLVD Q GKT+ L GH
Sbjct: 357 VRDFDMERFQLSKHFCFPWPVNHTSLSPDGKLLAVVGDNPKGLLVDSQTGKTITPLRGHL 536
Query: 305 DYSFASAWHPNGLAFATGNQDKTCRVWDARNVSSPIAILKNNLGASRSIRFSSDGQFMVV 364
D+SFASAWHP+G FATGNQDKTCRVWD RN+S +A+LK NLGA RSIRF+SDGQFM +
Sbjct: 537 DFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGQFMAM 716
Query: 365 AEPADFVHVYSTTANYEKSQEIDFFGEISGVSVSPDDECMYIGIWDRTYASLLQYNRRHS 424
AEPADFVHVY T +EK QEIDFFGEISGVS SPD E ++IG+WDRTY SLLQ+NRR +
Sbjct: 717 AEPADFVHVYDTKHGFEKEQEIDFFGEISGVSFSPDTESLFIGVWDRTYGSLLQFNRRRN 896
Query: 425 YHYLD 429
Y YLD
Sbjct: 897 YMYLD 911
>TC226875 similar to UP|Q94JT6 (Q94JT6) At1g78070/F28K19_28, partial (84%)
Length = 1542
Score = 367 bits (943), Expect(2) = e-126
Identities = 172/318 (54%), Positives = 229/318 (71%)
Frame = +1
Query: 114 HFQLRNLVWATSKHDVYLVSNYSIKHWSSLSGNLSEIINFLGHVAPTEVLQCAGNQMEGF 173
+ LRNL+WATSKHDVYL+ NYS+ HWS+L E++N + PT L+ G +
Sbjct: 310 NIMLRNLLWATSKHDVYLMQNYSVMHWSALLRRGKEVLNVAKPIIPT--LKRPGFLAQPV 483
Query: 174 SQTQISTLAVKDNFLVAGGFQGELTCKRLDKKGVSFCTRTTHDDNAITNAVEIYESLSGA 233
S+ QIST+ VK+N +VAGGFQGEL CK L GV FC + T DDNAITNAV++Y + +G+
Sbjct: 484 SRVQISTMTVKENLMVAGGFQGELICKNLKHPGVLFCGKITTDDNAITNAVDVYSNPAGS 663
Query: 234 THFIAANNDSGVREYDIEKFQLLNQLHFPWPVNHTSISPDRKLMTVVGDNLEGLLVDPQN 293
I ANND VR +D E F L + W VN+TS+SPD KL+ V+GD+ E L+ D
Sbjct: 664 LRVITANNDFQVRVFDAENFASLGCFKYDWSVNNTSVSPDGKLLAVLGDSTECLIADANT 843
Query: 294 GKTVATLSGHQDYSFASAWHPNGLAFATGNQDKTCRVWDARNVSSPIAILKNNLGASRSI 353
GK +L GH DYSF+SAWHP+G ATGNQDKTCR+WD RN+S +A+LK +GA R++
Sbjct: 844 GKITGSLKGHLDYSFSSAWHPDGQILATGNQDKTCRLWDIRNLSQSMAVLKGRMGAIRAL 1023
Query: 354 RFSSDGQFMVVAEPADFVHVYSTTANYEKSQEIDFFGEISGVSVSPDDECMYIGIWDRTY 413
RF+SDG+F+ +AEPADFVH++ + + YE+ QEID FGEI+G+S SPD E +++GI DRTY
Sbjct: 1024RFTSDGRFLAMAEPADFVHIFDSHSGYEQGQEIDLFGEIAGISFSPDTEALFVGIADRTY 1203
Query: 414 ASLLQYNRRHSYHYLDSY 431
SLL++NR+ Y+YLDS+
Sbjct: 1204GSLLEFNRKRHYNYLDSF 1257
Score = 101 bits (252), Expect(2) = e-126
Identities = 48/89 (53%), Positives = 62/89 (68%), Gaps = 1/89 (1%)
Frame = +3
Query: 30 MQLTKVTDTSAA-HARKGKDIQGIPWEMLNITRESYRLTRLEQYRNFENILTSGETADKD 88
M ++ + TS R GKDIQGIPWE LN +R+ YR TRL+QY+N++N S K+
Sbjct: 6 MTISNTSSTSKTIFRRNGKDIQGIPWERLNYSRDKYRETRLKQYKNYQNFSLSPHHLHKE 185
Query: 89 CKQVQKGDKYYEFFYNTRTVKPTILHFQL 117
C QVQKG +Y+FF+NTR VK TI+HFQL
Sbjct: 186 CFQVQKGQTFYDFFFNTRLVKSTIVHFQL 272
>TC227649 weakly similar to UP|Q9LG00 (Q9LG00) F20N2.10, partial (44%)
Length = 657
Score = 368 bits (944), Expect = e-102
Identities = 173/207 (83%), Positives = 188/207 (90%)
Frame = +2
Query: 225 EIYESLSGATHFIAANNDSGVREYDIEKFQLLNQLHFPWPVNHTSISPDRKLMTVVGDNL 284
EIY+SLSGATH IA+NND GVREYD E+FQ LN F WPVNHTSISPDRKLMTVVGDNL
Sbjct: 2 EIYDSLSGATHIIASNNDCGVREYDTERFQPLNNFQFSWPVNHTSISPDRKLMTVVGDNL 181
Query: 285 EGLLVDPQNGKTVATLSGHQDYSFASAWHPNGLAFATGNQDKTCRVWDARNVSSPIAILK 344
+GLLVDPQNGKTVAT GH+DYSFASAWHP+G FATGNQDKTCRVWD R++SSP AILK
Sbjct: 182 DGLLVDPQNGKTVATFVGHRDYSFASAWHPDGRTFATGNQDKTCRVWDVRHLSSPTAILK 361
Query: 345 NNLGASRSIRFSSDGQFMVVAEPADFVHVYSTTANYEKSQEIDFFGEISGVSVSPDDECM 404
NNLGA+RSIRFSSDGQ+MVVAEPADFVHVYST A+Y K QEIDFFGEISGVS+SPDDEC+
Sbjct: 362 NNLGATRSIRFSSDGQYMVVAEPADFVHVYSTKADYRKRQEIDFFGEISGVSLSPDDECI 541
Query: 405 YIGIWDRTYASLLQYNRRHSYHYLDSY 431
YIGIWDRTYASLLQYNR+H Y YLD+Y
Sbjct: 542 YIGIWDRTYASLLQYNRKHQYKYLDAY 622
>TC227891 similar to UP|Q94AB4 (Q94AB4) AT3g13340/MDC11_13, partial (47%)
Length = 873
Score = 314 bits (804), Expect = 6e-86
Identities = 152/232 (65%), Positives = 186/232 (79%)
Frame = +2
Query: 17 DGAAEDVPLDEYEMQLTKVTDTSAAHARKGKDIQGIPWEMLNITRESYRLTRLEQYRNFE 76
D +E DEY+ ++TDTSAA ARKGKDIQGIPW+ L+I+RE YR TRLEQY+N+E
Sbjct: 182 DSESESDDDDEYDSMENRMTDTSAAEARKGKDIQGIPWDRLSISREKYRQTRLEQYKNYE 361
Query: 77 NILTSGETADKDCKQVQKGDKYYEFFYNTRTVKPTILHFQLRNLVWATSKHDVYLVSNYS 136
NI SGE ++K+C +G KYY+F+ NTR+VK TILHFQLRNLVWATSKHD YLVS+YS
Sbjct: 362 NIPHSGERSEKECTPTHRGGKYYDFWQNTRSVKSTILHFQLRNLVWATSKHDAYLVSSYS 541
Query: 137 IKHWSSLSGNLSEIINFLGHVAPTEVLQCAGNQMEGFSQTQISTLAVKDNFLVAGGFQGE 196
I HWSSL+ SEI+N GHVAP E + G+ +EGF+QTQISTLAV+D L+AGGFQGE
Sbjct: 542 IIHWSSLNSKRSEILNVSGHVAPCE--KHPGSLLEGFTQTQISTLAVRDKLLIAGGFQGE 715
Query: 197 LTCKRLDKKGVSFCTRTTHDDNAITNAVEIYESLSGATHFIAANNDSGVREY 248
L CK +D+ GVSFC+RTT+DDNAITNAVEIY+ SGA HF+A+NND GVR++
Sbjct: 716 LICKYVDRPGVSFCSRTTYDDNAITNAVEIYDHPSGAVHFMASNNDCGVRDF 871
>CO978788
Length = 813
Score = 256 bits (654), Expect = 1e-68
Identities = 129/276 (46%), Positives = 180/276 (64%), Gaps = 4/276 (1%)
Frame = -1
Query: 124 TSKHDVYLVSNYSIKHWSSLSGNLSEIINFLGHVAPTEVLQCAGNQMEGFSQTQ-ISTLA 182
TSKHD+YL + I HW++L+ +EI++ GHVAP+E + G MEG ++T+ I +A
Sbjct: 813 TSKHDLYLSAGTQICHWNALTSTNTEILDLEGHVAPSE--EHPGAFMEGLTETRRIDAMA 640
Query: 183 VKDNFLVAGGFQGELTCKRLDKKGVSFCTRTTHDDNAITNAVEIYES---LSGATHFIAA 239
V L+ GG +G+L CK LD+ G+SFC R+ DD + NA+EIY+ S HF+ +
Sbjct: 639 VGHKLLIVGGNEGQLICKHLDRPGISFCFRS--DDPRMINAIEIYKCPTLTSEVIHFMVS 466
Query: 240 NNDSGVREYDIEKFQLLNQLHFPWPVNHTSISPDRKLMTVVGDNLEGLLVDPQNGKTVAT 299
+ VR +D+E FQ + FPWPV H S SPD + + VVGD EG LVD Q G +
Sbjct: 465 YEEGSVRIFDVETFQF-SHFEFPWPVRHASSSPDGRQLVVVGDKPEGTLVDSQTGLIIQY 289
Query: 300 LSGHQDYSFASAWHPNGLAFATGNQDKTCRVWDARNVSSPIAILKNNLGASRSIRFSSDG 359
GH YS +SAWHP+G FATGN+D+TCR+WDARN+S + L N+ SI F+SDG
Sbjct: 288 FGGHFGYSCSSAWHPDGHRFATGNRDRTCRIWDARNLSKSVFALGGNVSTISSISFTSDG 109
Query: 360 QFMVVAEPADFVHVYSTTANYEKSQEIDFFGEISGV 395
+FM ++E DFVHVY A++++ QEI+FFG +SG+
Sbjct: 108 RFMAMSEKQDFVHVYDVGADFKREQEINFFGYVSGL 1
>TC227650 similar to UP|Q9LG00 (Q9LG00) F20N2.10, partial (28%)
Length = 1264
Score = 246 bits (628), Expect = 1e-65
Identities = 114/136 (83%), Positives = 125/136 (91%)
Frame = +2
Query: 296 TVATLSGHQDYSFASAWHPNGLAFATGNQDKTCRVWDARNVSSPIAILKNNLGASRSIRF 355
TVAT GH+DYSFASAWHP+G FATGNQDKTCRVWD R++SSP AILKNNLGA+RSIRF
Sbjct: 614 TVATFVGHRDYSFASAWHPDGRTFATGNQDKTCRVWDVRHLSSPTAILKNNLGATRSIRF 793
Query: 356 SSDGQFMVVAEPADFVHVYSTTANYEKSQEIDFFGEISGVSVSPDDECMYIGIWDRTYAS 415
SSDGQ+MVVAEPADFVHVYST A+Y K QEIDFFGEISGVS+SPDDEC+YIGIWDRTYAS
Sbjct: 794 SSDGQYMVVAEPADFVHVYSTKADYRKRQEIDFFGEISGVSLSPDDECIYIGIWDRTYAS 973
Query: 416 LLQYNRRHSYHYLDSY 431
LLQYNR+H Y YLD+Y
Sbjct: 974 LLQYNRKHQYKYLDAY 1021
>TC220623 similar to UP|Q94AB4 (Q94AB4) AT3g13340/MDC11_13, partial (31%)
Length = 562
Score = 218 bits (554), Expect = 5e-57
Identities = 99/138 (71%), Positives = 113/138 (81%)
Frame = +3
Query: 292 QNGKTVATLSGHQDYSFASAWHPNGLAFATGNQDKTCRVWDARNVSSPIAILKNNLGASR 351
Q GKTV L GH DYSFASAWHP+G FATGNQDKTCRVWD RN+S + +LK NLGA R
Sbjct: 3 QTGKTVKPLCGHLDYSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVTVLKGNLGAIR 182
Query: 352 SIRFSSDGQFMVVAEPADFVHVYSTTANYEKSQEIDFFGEISGVSVSPDDECMYIGIWDR 411
SIRF+SDG+FM +AEPADFVHVY + +EK QEIDFFGEISGVS SPD E +++G+WDR
Sbjct: 183 SIRFTSDGRFMAMAEPADFVHVYDAQSGFEKEQEIDFFGEISGVSFSPDTESLFVGVWDR 362
Query: 412 TYASLLQYNRRHSYHYLD 429
TY SLLQYNRR +Y YLD
Sbjct: 363 TYGSLLQYNRRRNYMYLD 416
>BU764216 weakly similar to GP|15081811|gb| AT3g13340/MDC11_13 {Arabidopsis
thaliana}, partial (15%)
Length = 445
Score = 155 bits (392), Expect = 3e-38
Identities = 75/103 (72%), Positives = 85/103 (81%)
Frame = +3
Query: 1 MEEDDFFDDVDEQEEFDGAAEDVPLDEYEMQLTKVTDTSAAHARKGKDIQGIPWEMLNIT 60
M+EDDFFD++D+Q G D LDEYEM LTKVTDT+AA ARKGKDIQGIPWE LNI+
Sbjct: 141 MDEDDFFDEIDDQNHGRGVG-DAALDEYEM-LTKVTDTTAAQARKGKDIQGIPWESLNIS 314
Query: 61 RESYRLTRLEQYRNFENILTSGETADKDCKQVQKGDKYYEFFY 103
RE YRLTRLEQYRNFENIL SG+ DK+CKQ++KG YYEFFY
Sbjct: 315 RERYRLTRLEQYRNFENILKSGDAVDKECKQIEKGGNYYEFFY 443
>BM143141 similar to GP|13937195|gb| At1g78070/F28K19_28 {Arabidopsis
thaliana}, partial (21%)
Length = 342
Score = 127 bits (318), Expect = 1e-29
Identities = 55/92 (59%), Positives = 71/92 (76%)
Frame = +1
Query: 311 AWHPNGLAFATGNQDKTCRVWDARNVSSPIAILKNNLGASRSIRFSSDGQFMVVAEPADF 370
AWHPNG ATGNQDKTCR+WD RN+S +A+LK +GA R F+SDG+F+ +AEPA F
Sbjct: 64 AWHPNGQILATGNQDKTCRLWDIRNLSQSMAVLKGRMGAIRFFIFTSDGRFLAMAEPAHF 243
Query: 371 VHVYSTTANYEKSQEIDFFGEISGVSVSPDDE 402
VH++ + + YE+ QEID FGEI+G+S SPD E
Sbjct: 244 VHIFDSHSGYEQGQEIDLFGEIAGISFSPDTE 339
>BI699099 similar to GP|15081811|gb AT3g13340/MDC11_13 {Arabidopsis
thaliana}, partial (22%)
Length = 422
Score = 125 bits (314), Expect = 4e-29
Identities = 63/119 (52%), Positives = 84/119 (69%), Gaps = 3/119 (2%)
Frame = +2
Query: 2 EEDDFFDDVDEQE---EFDGAAEDVPLDEYEMQLTKVTDTSAAHARKGKDIQGIPWEMLN 58
E +D DD+D++ E G D+ D+Y+ K DT+AA AR+G+DIQGIPW+ LN
Sbjct: 71 EMEDVEDDMDDESIDRERGGVESDI--DDYDHSSGKGVDTTAAQARRGQDIQGIPWDSLN 244
Query: 59 ITRESYRLTRLEQYRNFENILTSGETADKDCKQVQKGDKYYEFFYNTRTVKPTILHFQL 117
ITRE YR TRLEQY+N+ENI SG+ + KDCK +KG +Y+F N+R+VK +ILHFQL
Sbjct: 245 ITRERYRQTRLEQYKNYENIPGSGDKSGKDCKNTKKGYSFYDFRKNSRSVKSSILHFQL 421
>BG406474
Length = 339
Score = 77.0 bits (188), Expect(2) = 2e-22
Identities = 35/46 (76%), Positives = 40/46 (86%)
Frame = +3
Query: 200 KRLDKKGVSFCTRTTHDDNAITNAVEIYESLSGATHFIAANNDSGV 245
+ LD+ GVSFCTRTT+DDNAITNA+EIY+ SGA HF AANNDSGV
Sbjct: 201 QHLDRPGVSFCTRTTYDDNAITNAIEIYDCPSGAVHFTAANNDSGV 338
Score = 46.6 bits (109), Expect(2) = 2e-22
Identities = 22/32 (68%), Positives = 25/32 (77%)
Frame = +2
Query: 171 EGFSQTQISTLAVKDNFLVAGGFQGELTCKRL 202
EGF+ TQ+STLAVK+ LV GGFQGEL K L
Sbjct: 2 EGFTHTQVSTLAVKEKLLVVGGFQGELIFKLL 97
>BG882640 similar to GP|13937195|gb| At1g78070/F28K19_28 {Arabidopsis
thaliana}, partial (14%)
Length = 408
Score = 82.4 bits (202), Expect = 4e-16
Identities = 50/138 (36%), Positives = 68/138 (49%), Gaps = 31/138 (22%)
Frame = +1
Query: 134 NYSIKHWSSLSGNLSEIINFLGHVAPTEVLQCAGNQMEGFSQTQISTLAVKDNFLVAGGF 193
+YS+ HWS+L E++N + PT L G + S+ QIST+ VK+N +VAGGF
Sbjct: 1 DYSVMHWSALLQRSKEVLNVAKPIIPT--LTHPGFLAQPVSRVQISTMTVKENLMVAGGF 174
Query: 194 QGELTCK-------------------------------RLDKKGVSFCTRTTHDDNAITN 222
QGEL CK L + GV FC + T D NAITN
Sbjct: 175 QGELICKVGLIIISYFHSI**LTI*NPPL*CV*IICGQNLKQPGVLFCGKITTDGNAITN 354
Query: 223 AVEIYESLSGATHFIAAN 240
AV++Y + +G+ I AN
Sbjct: 355 AVDVYRNPAGSLRVITAN 408
>TC227890 similar to UP|Q94AB4 (Q94AB4) AT3g13340/MDC11_13, partial (11%)
Length = 410
Score = 82.0 bits (201), Expect = 5e-16
Identities = 37/49 (75%), Positives = 41/49 (83%)
Frame = -2
Query: 381 EKSQEIDFFGEISGVSVSPDDECMYIGIWDRTYASLLQYNRRHSYHYLD 429
EK QEIDFFGEISGVS SPD E ++IG+WDRTY SLLQ NRR +Y YLD
Sbjct: 409 EKEQEIDFFGEISGVSFSPDTESLFIGVWDRTYGSLLQLNRRRNYMYLD 263
>BF070150
Length = 416
Score = 57.0 bits (136), Expect(2) = 7e-13
Identities = 24/29 (82%), Positives = 27/29 (92%)
Frame = +1
Query: 131 LVSNYSIKHWSSLSGNLSEIINFLGHVAP 159
L+SNYS+ HWSSLSGNL+EIINF GHVAP
Sbjct: 298 LISNYSVNHWSSLSGNLTEIINFAGHVAP 384
Score = 34.7 bits (78), Expect(2) = 7e-13
Identities = 14/17 (82%), Positives = 15/17 (87%)
Frame = +2
Query: 112 ILHFQLRNLVWATSKHD 128
+ FQLRNLVWATSKHD
Sbjct: 245 LTRFQLRNLVWATSKHD 295
>TC223785 weakly similar to UP|Q9LG00 (Q9LG00) F20N2.10, partial (12%)
Length = 469
Score = 70.5 bits (171), Expect = 1e-12
Identities = 36/78 (46%), Positives = 52/78 (66%), Gaps = 6/78 (7%)
Frame = +1
Query: 3 EDDFFDDVDEQEEFDGAA------EDVPLDEYEMQLTKVTDTSAAHARKGKDIQGIPWEM 56
+D+ +V+E F G A +D EY+ +++DT+AA AR+GKDIQGIPW+
Sbjct: 235 DDNEMAEVEEDMYFRGRAFGESDSDDDDDYEYDPLENRISDTTAAEARRGKDIQGIPWDR 414
Query: 57 LNITRESYRLTRLEQYRN 74
L+I+RE YR TRL+QY+N
Sbjct: 415 LSISREKYRQTRLDQYKN 468
>TC232885 weakly similar to UP|Q94JT6 (Q94JT6) At1g78070/F28K19_28, partial
(10%)
Length = 173
Score = 62.4 bits (150), Expect = 4e-10
Identities = 25/50 (50%), Positives = 38/50 (76%)
Frame = +3
Query: 69 LEQYRNFENILTSGETADKDCKQVQKGDKYYEFFYNTRTVKPTILHFQLR 118
L+QY+N++N S K+C +VQKG+ +Y+FF+NTR VK TI+HFQ++
Sbjct: 3 LKQYKNYQNFSRSRHDLRKECLEVQKGETFYDFFFNTRLVKSTIVHFQVK 152
>BG882410
Length = 352
Score = 59.3 bits (142), Expect = 3e-09
Identities = 25/38 (65%), Positives = 31/38 (80%)
Frame = +2
Query: 229 SLSGATHFIAANNDSGVREYDIEKFQLLNQLHFPWPVN 266
S+SGA HF+A+NNDSGVR++DIE+ QL FPWPVN
Sbjct: 206 SISGAVHFMASNNDSGVRDFDIERCQLSKHFCFPWPVN 319
Score = 48.1 bits (113), Expect = 7e-06
Identities = 21/23 (91%), Positives = 23/23 (99%)
Frame = +1
Query: 206 GVSFCTRTTHDDNAITNAVEIYE 228
GVSFCTRTT++DNAITNAVEIYE
Sbjct: 4 GVSFCTRTTYEDNAITNAVEIYE 72
>AI973624
Length = 411
Score = 58.2 bits (139), Expect = 7e-09
Identities = 34/101 (33%), Positives = 54/101 (52%), Gaps = 6/101 (5%)
Frame = +3
Query: 37 DTSAAHARKGKDIQGIPWEMLNI---TRESYRLTRLEQYRNFENILTSGETADKDCKQVQ 93
+T+A R GKDIQGI WE +RE++R R + N S + A ++C+
Sbjct: 105 NTTAKETRSGKDIQGITWETETSNYRSRETFRQHRSKGLLNGPEEHLSIKQAKQECQSTV 284
Query: 94 KGDKYYEFFYNTRTVKPTILHFQLRNL---VWATSKHDVYL 131
+G ++Y + + PTI + L + +W+TSKHD+YL
Sbjct: 285 QGGEFYNSYQYNNCLMPTIQDWALADYAGRLWSTSKHDLYL 407
>TC220739 weakly similar to UP|PRP4_HUMAN (O43172) U4/U6 small nuclear
ribonucleoprotein Prp4 (U4/U6 snRNP 60 kDa protein) (WD
splicing factor Prp4) (hPrp4), partial (34%)
Length = 1206
Score = 50.4 bits (119), Expect = 2e-06
Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 11/173 (6%)
Frame = +1
Query: 239 ANNDSGVREYDIEKF-QLLNQLHFPWPVNHTSISPDRKLMTVVGDNLEGLLVDPQNGKTV 297
A+ D R +DIE +LL Q V + D L G + + D + G+++
Sbjct: 373 ASFDKTWRLWDIETGDELLLQEGHSRSVYGLAFHNDGSLAASCGLDSLARVWDLRTGRSI 552
Query: 298 ATLSGHQDYSFASAWHPNGLAFATGNQDKTCRVWDARNVSSPIAILKNNLGASRSIRFSS 357
L GH ++ PNG ATG +D TCR+WD R S I ++ S+
Sbjct: 553 LALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSFYTIPAHSNLISQVKFEPH 732
Query: 358 DGQFMVVA---------EPADFVHVYSTTANYEKSQEIDFFGE-ISGVSVSPD 400
+G F+V A DF V + + + K +D G+ S V+VS D
Sbjct: 733 EGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSVDVLGDGGSIVTVSHD 891
Score = 37.4 bits (85), Expect = 0.013
Identities = 27/119 (22%), Positives = 44/119 (36%)
Frame = +1
Query: 294 GKTVATLSGHQDYSFASAWHPNGLAFATGNQDKTCRVWDARNVSSPIAILKNNLGASRSI 353
G + T GH D A+HP+G T + DKT R+WD + + + + + +
Sbjct: 289 GSLLKTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDI-ETGDELLLQEGHSRSVYGL 465
Query: 354 RFSSDGQFMVVAEPADFVHVYSTTANYEKSQEIDFFGEISGVSVSPDDECMYIGIWDRT 412
F +DG V+ + G+S SP+ + G D T
Sbjct: 466 AFHNDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNT 642
>TC228105 similar to GB|AAP37692.1|30725340|BT008333 At4g29830 {Arabidopsis
thaliana;} , complete
Length = 1113
Score = 49.7 bits (117), Expect = 3e-06
Identities = 32/121 (26%), Positives = 57/121 (46%), Gaps = 3/121 (2%)
Frame = +3
Query: 242 DSGVREYDIEKFQLLNQL--HFPWPVNHTSISP-DRKLMTVVGDNLEGLLVDPQNGKTVA 298
D + +D+ + + L+ L HF PV SP D +L+ D+ + D + +
Sbjct: 531 DGTISVFDVPRAKFLHHLEGHF-MPVRSLVYSPYDPRLLFTASDDGNVHMYDAEGKALIG 707
Query: 299 TLSGHQDYSFASAWHPNGLAFATGNQDKTCRVWDARNVSSPIAILKNNLGASRSIRFSSD 358
T+SGH + P+G A ATG+ D++ R+WD N+ + + + N+ + F
Sbjct: 708 TMSGHASWVLCVDVSPDGAAIATGSSDRSVRLWDL-NMRASVQTMSNHSDQVWGVAFRPP 884
Query: 359 G 359
G
Sbjct: 885 G 887
Score = 40.8 bits (94), Expect = 0.001
Identities = 49/209 (23%), Positives = 78/209 (36%), Gaps = 26/209 (12%)
Frame = +3
Query: 242 DSGVREYDIEKFQLLNQLHFP----WPVNHTSISPDRKLMTVVGDNLEGL-LVDPQNGKT 296
DS VR +D++ + L P W + P ++ V G + L D + +
Sbjct: 237 DSFVRVFDVDSNATIATLEAPPSEVWQMR---FDPKGAILAVAGGGSASVKLWDTSSWEL 407
Query: 297 VATLS-------------GHQDYSFASAWHPNGLAFATGNQDKTCRVWDARNVSSPIAIL 343
VATLS G + + + AW P+G A G+ D T V+D + L
Sbjct: 408 VATLSIPRPEGQKPTDKSGSKKFVLSVAWSPDGKRLACGSMDGTISVFDVPRAKF-LHHL 584
Query: 344 KNNLGASRSIRFSS-DGQFMVVAEPADFVHVYSTTANYEKSQEIDFFGEISGVSVSPDDE 402
+ + RS+ +S D + + A VH+Y + V VSPD
Sbjct: 585 EGHFMPVRSLVYSPYDPRLLFTASDDGNVHMYDAEGKALIGTMSGHASWVLCVDVSPDGA 764
Query: 403 CMYIG-------IWDRTYASLLQYNRRHS 424
+ G +WD + +Q HS
Sbjct: 765 AIATGSSDRSVRLWDLNMRASVQTMSNHS 851
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,482,846
Number of Sequences: 63676
Number of extensions: 246385
Number of successful extensions: 1431
Number of sequences better than 10.0: 114
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of query: 432
length of database: 12,639,632
effective HSP length: 100
effective length of query: 332
effective length of database: 6,272,032
effective search space: 2082314624
effective search space used: 2082314624
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC146632.1