TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146631.2 + phase: 0 /pseudo
         (953 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NP595172 polyprotein [Glycine max]                                     56  9e-08
BU549069                                                               37  0.032
TC203299 weakly similar to PDB|1CBG.0|1311386|1CBG Cyanogenic Be...    31  3.0
NP395547 reverse transcriptase [Glycine max]                           30  6.6
TC233160 similar to UP|Q8S976 (Q8S976) Auxin response factor 10 ...    29  8.6

>NP595172 polyprotein [Glycine max]
          Length = 4659

 Score = 55.8 bits (133), Expect = 9e-08
 Identities = 54/164 (32%), Positives = 82/164 (49%), Gaps = 4/164 (2%)
 Frame = +2

Query: 61   YCWLRRRMVA*GCV*ITVS*IK*R*RIGIHFRGLTI*WIS*WVHVCLVKL----I*GQVT 116
            YC LRR+M       I   *++  *RI    +     W++  ++   + +    I*GQ T
Sbjct: 1910 YCLLRRKMEVGDSAQIIEL*MQSL*RIAFQCQQ----WMNC*MNYMELNIFQNWI*GQDT 2077

Query: 117  IRLR*RMRICRRRPLGHVMVTMNIR*CLSVILMRLLCLWSI*TEFSMLIWINLWLCLLMT 176
            I+    +RI R+  L H+M  MN  *C  V+LM      + *T++  L+  NL+LC LMT
Sbjct: 2078 IKFWYSLRIERKLLLEHIMAIMNG**CHLVLLMHQPHSNA**TKYFSLLSENLFLCFLMT 2257

Query: 177  S*FILRLKKSMQNI*GLCCKC*KKRSCMPSCLNVSLVK*SKFSW 220
            S*+I+ L + + +   LC + *   S +  C NV L      +W
Sbjct: 2258 S*YIVLLGRIISSTWNLCYRP*SNISYLLDCPNVHLEIQKLITW 2389



 Score = 38.5 bits (88), Expect = 0.014
 Identities = 45/188 (23%), Positives = 74/188 (38%)
 Frame = +3

Query: 564  CCSFCLCMFDLSKV*G*ASEACSVVDTVRCARAEVGDHFHGFCDEFTEHSERA*CHLGCC 623
            C S    M DLS  *     A     T   +   +G   HGF   FT+      CH G  
Sbjct: 3324 CQSLYTEMLDLSTS*IKQYTASRTTPTFTYSSTSLGRCSHGFHHRFTKFLWII-CHNGSH 3500

Query: 624  RQVDEVGTLYSDQC*LSGSSVGGDLYS*YCEVAWSSVEYCVGKRPEVHFKILEEFARCIG 683
                ++ + +S + *L        +Y  + ++ W +  Y V  R   +   L  F +   
Sbjct: 3501 **THQICSFHSIKS*L*Q*GGSRGIYESHSQITWDTKIYSV*SR*GFYQYFLATFIQVTR 3680

Query: 684  FKVEVEFGLSSANRWSVGENDSIVRGFAKRMCT*ARWSLG*SPTVDRVHVQQQLPFEYWY 743
            + +     LSS  RW++   + +    +  +  *    LG   T+ RV V   + +E  +
Sbjct: 3681 YYIGHVISLSSTVRWTI*GAE*MFGDVS*MLHV*TS*RLGKGITMGRVLV*HCISYELRH 3860

Query: 744  GTVQSFVW 751
             ++QS VW
Sbjct: 3861 DSIQSLVW 3884


>BU549069 
          Length = 615

 Score = 37.4 bits (85), Expect = 0.032
 Identities = 38/134 (28%), Positives = 67/134 (49%)
 Frame = -3

Query: 817 ESYSYDRCRTCIEV*EVDS*VY*SISDI*ESWNSGI*SGFATTSFEFA*CVSCVATSEVC 876
           ES+S D   +  E+ +  + +Y S  + *+S + GI +     +F  + C+SCV+T  V 
Sbjct: 613 ESHSKDWGWSSTEIPKTHTSLYRSFPNS*KSXSCGIPNCITPITF*SSQCLSCVSTPYVY 434

Query: 877 SGSFACYSNR*CAG*RQPYS*DLTVENQRP*GEEVERQGYTSSEGCLGWSNR*KFDLGAG 936
             S +C    *    R+   *++T+E++    +  +++G +   G LG   R +  +G  
Sbjct: 433 P*SISCGQIG*RTSKRELDI*NITIEDRG*KNKAPKKEGESIG*GDLGRYIRRRCHVGIR 254

Query: 937 E*DAGVLSRVVCLR 950
           E DA  LS  V +R
Sbjct: 253 ESDASSLSIFV*VR 212


>TC203299 weakly similar to PDB|1CBG.0|1311386|1CBG Cyanogenic
           Beta-Glucosidase Mol_id: 1; Molecule: Cyanogenic
           Beta-Glucosidase; Chain: Null; Ec: 3.2.1.21. {Trifolium
           repens;} , partial (80%)
          Length = 1781

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 15/36 (41%), Positives = 18/36 (49%), Gaps = 1/36 (2%)
 Frame = +3

Query: 194 CCKC*-KKRSCMPSCLNVSLVK*SKFSWPHYFW*WY 228
           CCKC  KKRS  P C N+       FS+    W W+
Sbjct: 81  CCKCNSKKRSAKPPCFNIQQ---KPFSFHFSLWNWF 179


>NP395547 reverse transcriptase [Glycine max]
          Length = 762

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 20/50 (40%), Positives = 30/50 (60%)
 Frame = +2

Query: 114 QVTIRLR*RMRICRRRPLGHVMVTMNIR*CLSVILMRLLCLWSI*TEFSM 163
           QVTIRL+  +RI +++ L  + V + I  C SV +M LL    +* +F M
Sbjct: 290 QVTIRLQWILRIKKKQLLHVLSVFLLIAACRSVYVMPLLLFRDV*WQFLM 439


>TC233160 similar to UP|Q8S976 (Q8S976) Auxin response factor 10 (Fragment),
           partial (26%)
          Length = 658

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 20/54 (37%), Positives = 27/54 (49%), Gaps = 7/54 (12%)
 Frame = +1

Query: 309 FTEAGRTFCCLL*CV*VGLGW---CFDARW*SGSLW----F*AVEDS*KELSYT 355
           F E+   FC  L CV  G  W   C+D+    G+LW    F  VE   ++LSY+
Sbjct: 139 FCESQEAFCWGLNCVFEGRKWGFVCWDSTSEEGNLWWT*DFLRVESCRRKLSYS 300


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.373    0.168    0.680 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,039,602
Number of Sequences: 63676
Number of extensions: 758399
Number of successful extensions: 9388
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3529
Number of HSP's successfully gapped in prelim test: 299
Number of HSP's that attempted gapping in prelim test: 5690
Number of HSP's gapped (non-prelim): 4168
length of query: 953
length of database: 12,639,632
effective HSP length: 106
effective length of query: 847
effective length of database: 5,889,976
effective search space: 4988809672
effective search space used: 4988809672
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (22.0 bits)
S2: 64 (29.3 bits)