TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146590.9 - phase: 0 /pseudo
         (183 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC231479 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {A...    99  9e-22
TC233713 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {A...    89  1e-18
TC230936 weakly similar to UP|Q9AWT3 (Q9AWT3) Nucleoid DNA-bindi...    82  1e-16
BU091441                                                               74  3e-14
TC205250 similar to GB|BAB01116.1|11994113|AB026658 CND41, chlor...    74  5e-14
TC215396 weakly similar to UP|Q8H9F4 (Q8H9F4) 41 kD chloroplast ...    73  9e-14
TC215397 weakly similar to UP|Q8S9J6 (Q8S9J6) AT5g10770/T30N20_4...    71  2e-13
BM093602                                                               69  6e-13
TC219129 weakly similar to UP|O23792 (O23792) CND41, chloroplast...    68  3e-12
TC217139 weakly similar to UP|Q6K6I0 (Q6K6I0) Nucellin-like aspa...    56  1e-08
TC222410 similar to UP|Q84M99 (Q84M99) At2g03200, partial (58%)        55  2e-08
TC204568 similar to UP|Q9FL43 (Q9FL43) Nucleoid DNA-binding-like...    53  7e-08
TC213024                                                               50  8e-07
TC209564 weakly similar to UP|Q6Z8K1 (Q6Z8K1) Aspartyl protease-...    44  6e-05
AW164332 similar to GP|17065172|gb| nucellin-like protein {Arabi...    44  6e-05
BE660701 weakly similar to GP|9759039|dbj| aspartyl protease-lik...    44  6e-05
TC215510 weakly similar to GB|AAB60729.1|2160166|F21M12 F21M12.1...    42  2e-04
TC220427 weakly similar to GB|AAB60729.1|2160166|F21M12 F21M12.1...    41  4e-04
TC227094 UP|Q94IA2 (Q94IA2) Aspartic proteinase 1, partial (84%)       38  0.003
BG239716 similar to GP|15809800|gb| AT4g16560/dl4305c {Arabidops...    37  0.004

>TC231479 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Arabidopsis
           thaliana;} , partial (38%)
          Length = 840

 Score = 99.4 bits (246), Expect = 9e-22
 Identities = 47/108 (43%), Positives = 61/108 (55%)
 Frame = +3

Query: 59  RSINRANHFYKTALTNTPQSTVIPDHGEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPC 118
           R  N  + F  + ++   Q +     GEY     VGTPP  LY + DTGSD+VWLQC+PC
Sbjct: 372 RPTNTGSGFSSSVVSGLSQGS-----GEYFTRLGVGTPPKYLYIVLDTGSDVVWLQCKPC 536

Query: 119 KECYNQTTPKFKPSKSSTYKNIPCSSDLCKSGQQGAVCTDQNFCEYSI 166
            +CY+QT   F PSKS T+  IPCSS LC+        T  N C+Y +
Sbjct: 537 TKCYSQTDQIFDPSKSKTFAGIPCSSPLCRRLDSPGCNTKNNLCQYQV 680


>TC233713 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Arabidopsis
           thaliana;} , partial (33%)
          Length = 516

 Score = 89.0 bits (219), Expect = 1e-18
 Identities = 37/82 (45%), Positives = 47/82 (57%)
 Frame = +1

Query: 85  GEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCKECYNQTTPKFKPSKSSTYKNIPCSS 144
           GEY     VGTP   +Y + DTGSD+VWLQC PC++CY Q  P F P+KS TY  IPC +
Sbjct: 79  GEYFTRIGVGTPARYVYMVLDTGSDVVWLQCAPCRKCYTQADPVFDPTKSRTYAGIPCGA 258

Query: 145 DLCKSGQQGAVCTDQNFCEYSI 166
            LC+             C+Y +
Sbjct: 259 PLCRRLDSPGCNNKNKVCQYQV 324


>TC230936 weakly similar to UP|Q9AWT3 (Q9AWT3) Nucleoid DNA-binding protein
           cnd41-like protein, partial (54%)
          Length = 985

 Score = 82.0 bits (201), Expect = 1e-16
 Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 1/130 (0%)
 Frame = +1

Query: 21  SHALNNGFSVELIHRDSSKSPLYQPTQNK-YQHIVNAARRSINRANHFYKTALTNTPQST 79
           SH+     ++  + RDS++    Q   +   + + N+          F   AL     S 
Sbjct: 34  SHSDYKSLTLSRLARDSARVKALQTRLDLCLKRVSNSDLHPAESKAEFESNALQGPVVSG 213

Query: 80  VIPDHGEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCKECYNQTTPKFKPSKSSTYKN 139
                GEY +   +G PP + Y + DTGSD+ W+QC PC ECY Q+ P F P  S++Y  
Sbjct: 214 TSQGSGEYFLRVGIGKPPSQAYVVLDTGSDVSWIQCAPCSECYQQSDPIFDPISSNSYSP 393

Query: 140 IPCSSDLCKS 149
           I C +  CKS
Sbjct: 394 IRCDAPQCKS 423


>BU091441 
          Length = 403

 Score = 74.3 bits (181), Expect = 3e-14
 Identities = 32/65 (49%), Positives = 45/65 (69%)
 Frame = +1

Query: 87  YLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCKECYNQTTPKFKPSKSSTYKNIPCSSDL 146
           Y++T  +G+    +  I DTGSD+ W+QCEPC  CYNQ  P FKPS SS+Y+++ C+S  
Sbjct: 196 YIVTMGLGSKNMTV--IIDTGSDLTWVQCEPCMSCYNQQGPIFKPSTSSSYQSVSCNSST 369

Query: 147 CKSGQ 151
           C+S Q
Sbjct: 370 CQSLQ 384


>TC205250 similar to GB|BAB01116.1|11994113|AB026658 CND41, chloroplast
           nucleoid DNA binding protein-like {Arabidopsis
           thaliana;} , partial (67%)
          Length = 2013

 Score = 73.6 bits (179), Expect = 5e-14
 Identities = 30/70 (42%), Positives = 41/70 (57%)
 Frame = +2

Query: 85  GEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCKECYNQTTPKFKPSKSSTYKNIPCSS 144
           GEY     VG P    Y + DTGSD+ WLQC+PC +CY Q+ P F P+ SS+Y  + C +
Sbjct: 584 GEYFSRVGVGQPSKPFYMVLDTGSDVNWLQCKPCSDCYQQSDPIFDPTASSSYNPLTCDA 763

Query: 145 DLCKSGQQGA 154
             C+  +  A
Sbjct: 764 QQCQDLEMSA 793


>TC215396 weakly similar to UP|Q8H9F4 (Q8H9F4) 41 kD chloroplast nucleoid DNA
           binding protein (CND41), partial (69%)
          Length = 1808

 Score = 72.8 bits (177), Expect = 9e-14
 Identities = 37/88 (42%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
 Frame = +3

Query: 85  GEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPC-KECYNQTTPKFKPSKSSTYKNIPCS 143
           G Y +   +GTP   L  I DTGSD+ W QCEPC + CY Q    F PSKS++Y NI C+
Sbjct: 438 GNYFVVVGLGTPKRDLSLIFDTGSDLTWTQCEPCARSCYKQQDAIFDPSKSTSYSNITCT 617

Query: 144 SDLC-----KSGQQGAVCTDQNFCEYSI 166
           S LC      +G +         C Y I
Sbjct: 618 STLCTQLSTATGNEPGCSASTKACIYGI 701


>TC215397 weakly similar to UP|Q8S9J6 (Q8S9J6) AT5g10770/T30N20_40, partial
           (76%)
          Length = 1447

 Score = 71.2 bits (173), Expect = 2e-13
 Identities = 33/64 (51%), Positives = 40/64 (61%), Gaps = 1/64 (1%)
 Frame = +3

Query: 85  GEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPC-KECYNQTTPKFKPSKSSTYKNIPCS 143
           G Y +   +GTP   L  I DTGSD+ W QCEPC + CY Q    F PSKS++Y NI C+
Sbjct: 102 GNYFVVVGLGTPKRDLSLIFDTGSDLTWTQCEPCARSCYKQQDVIFDPSKSTSYSNITCT 281

Query: 144 SDLC 147
           S LC
Sbjct: 282 SALC 293


>BM093602 
          Length = 416

 Score = 68.9 bits (167), Expect(2) = 6e-13
 Identities = 28/66 (42%), Positives = 43/66 (64%)
 Frame = +1

Query: 101 YGIADTGSDIVWLQCEPCKECYNQTTPKFKPSKSSTYKNIPCSSDLCKSGQQGAVCTDQN 160
           Y + D+GSDI+W+QCEPC +CY+Q+ P F P+ SS++  + C+S +C S    A C  + 
Sbjct: 100 YVVMDSGSDIIWVQCEPCTQCYHQSDPVFNPADSSSFSGVSCASTVC-SHVDNAAC-HEG 273

Query: 161 FCEYSI 166
            C Y +
Sbjct: 274 RCRYEV 291



 Score = 21.2 bits (43), Expect(2) = 6e-13
 Identities = 8/18 (44%), Positives = 11/18 (60%)
 Frame = +3

Query: 85  GEYLMTYSVGTPPFKLYG 102
           GEY +   VG+PP  + G
Sbjct: 54  GEYFVRIGVGSPPKPVRG 107


>TC219129 weakly similar to UP|O23792 (O23792) CND41, chloroplast nucleoid
           DNA binding protein precursor, partial (52%)
          Length = 1348

 Score = 67.8 bits (164), Expect = 3e-12
 Identities = 32/63 (50%), Positives = 38/63 (59%), Gaps = 1/63 (1%)
 Frame = +1

Query: 86  EYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCK-ECYNQTTPKFKPSKSSTYKNIPCSS 144
           +Y +   +GTP   L    DTGS + W QCEPC   CY Q  P F PSKSS+Y NI C+S
Sbjct: 436 DYYVVVGLGTPKRDLSLTFDTGSYLTWTQCEPCAGSCYKQQDPIFDPSKSSSYTNIKCTS 615

Query: 145 DLC 147
            LC
Sbjct: 616 SLC 624


>TC217139 weakly similar to UP|Q6K6I0 (Q6K6I0) Nucellin-like aspartic
           protease-like, partial (61%)
          Length = 967

 Score = 55.8 bits (133), Expect = 1e-08
 Identities = 29/79 (36%), Positives = 40/79 (49%), Gaps = 7/79 (8%)
 Frame = +1

Query: 93  VGTPPFKLYGIADTGSDIVWLQCEPCKECYNQTT-----PKFKPSKSSTYKNIPCSSDLC 147
           +GTPP   Y   DTGSDI+W+ C  CKEC  ++        +   +SS+ K +PC  + C
Sbjct: 1   IGTPPKNYYLQVDTGSDIMWVNCIQCKECPTRSNLGMDLTLYDIKESSSGKFVPCDQEFC 180

Query: 148 KSGQQGAV--CTDQNFCEY 164
           K    G +  CT    C Y
Sbjct: 181 KEINGGLLTGCTANISCPY 237


>TC222410 similar to UP|Q84M99 (Q84M99) At2g03200, partial (58%)
          Length = 1087

 Score = 54.7 bits (130), Expect = 2e-08
 Identities = 24/51 (47%), Positives = 31/51 (60%)
 Frame = +3

Query: 114 QCEPCKECYNQTTPKFKPSKSSTYKNIPCSSDLCKSGQQGAVCTDQNFCEY 164
           QC+PC +CY Q TP F P KSS++  + C S LC S    + C+D   CEY
Sbjct: 51  QCKPCTQCYKQPTPIFDPKKSSSFSKVSCGSSLC-SAVPSSTCSDG--CEY 194


>TC204568 similar to UP|Q9FL43 (Q9FL43) Nucleoid DNA-binding-like protein,
           partial (88%)
          Length = 1307

 Score = 53.1 bits (126), Expect = 7e-08
 Identities = 23/61 (37%), Positives = 33/61 (53%)
 Frame = +2

Query: 87  YLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCKECYNQTTPKFKPSKSSTYKNIPCSSDL 146
           Y++   +G+PP  L    DT +D  W+ C  C  C   T+  F P KS+T+KN+ C S  
Sbjct: 311 YIVRAKIGSPPQTLLLAMDTSNDAAWIPCTACDGC---TSTLFAPEKSTTFKNVSCGSPQ 481

Query: 147 C 147
           C
Sbjct: 482 C 484


>TC213024 
          Length = 465

 Score = 49.7 bits (117), Expect = 8e-07
 Identities = 26/68 (38%), Positives = 29/68 (42%), Gaps = 14/68 (20%)
 Frame = -1

Query: 103 IADTGSDIVWLQCEPCKECYNQTTPKFKPSKSSTYK--------------NIPCSSDLCK 148
           I DTGS   W+ C PC  C  Q+ P F  SKSSTY                 PCS +   
Sbjct: 204 IMDTGSSFTWVMCHPCSSCSQQSVPIFDLSKSSTYALTFSECNKCDVVNCECPCSVEYVG 25

Query: 149 SGQQGAVC 156
           SG   A C
Sbjct: 24  SGSSKASC 1


>TC209564 weakly similar to UP|Q6Z8K1 (Q6Z8K1) Aspartyl protease-like,
           partial (26%)
          Length = 674

 Score = 43.5 bits (101), Expect = 6e-05
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
 Frame = +3

Query: 68  YKTALTNTPQSTVIPDHGEYLMTYS---VGTPPFKLYGIADTGSDIVWLQCEPCKEC--- 121
           Y+T   +    T    +  Y + Y+   +GTP        D GSD++W+ C+ C EC   
Sbjct: 9   YETLYPSEGGQTFFFGNALYWLHYTWIDIGTPNVSFLVALDAGSDMLWVPCD-CIECASL 185

Query: 122 ----YN---QTTPKFKPSKSSTYKNIPCSSDLC 147
               YN   +   +++PS S+T +++PC   LC
Sbjct: 186 SAGNYNVLDRDLNQYRPSLSNTSRHLPCGHKLC 284


>AW164332 similar to GP|17065172|gb| nucellin-like protein {Arabidopsis
           thaliana}, partial (13%)
          Length = 438

 Score = 43.5 bits (101), Expect = 6e-05
 Identities = 21/49 (42%), Positives = 31/49 (62%), Gaps = 2/49 (4%)
 Frame = +3

Query: 85  GEYLMTYSVGTPPFKLYGI-ADTGSDIVWLQCE-PCKECYNQTTPKFKP 131
           G Y ++ ++G PP K+Y +  DTGSD+ W+QC+ PCK C       +KP
Sbjct: 288 GYYTVSLAIGNPP-KVYDLDIDTGSDLTWVQCDAPCKGCTLPRNRLYKP 431


>BE660701 weakly similar to GP|9759039|dbj| aspartyl protease-like
           {Arabidopsis thaliana}, partial (12%)
          Length = 646

 Score = 43.5 bits (101), Expect = 6e-05
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
 Frame = +2

Query: 93  VGTPPFKLYGIADTGSDIVWLQCEPCKECYNQT-----TPKFKPSKSSTYKNIPCSSDLC 147
           +G  P   Y   DTGSD +W+ C  C  C  ++        + P+ S T K +PC  + C
Sbjct: 326 IGLGPNDYYVQVDTGSDTLWVNCVGCTTCPKKSGLGMELTLYDPNSSKTSKVVPCDDEFC 505

Query: 148 KSGQQGAVCTDQNFC 162
                G     +  C
Sbjct: 506 TXTYDGQFLDAKKTC 550


>TC215510 weakly similar to GB|AAB60729.1|2160166|F21M12 F21M12.13
           {Arabidopsis thaliana;} , partial (68%)
          Length = 1381

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = +3

Query: 85  GEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCKECYNQTTPKFKPSKSSTYKNIPCSS 144
           G Y++   +GTP   L+ + DT +D  ++ C  C  C + T   F P  S++Y  + CS 
Sbjct: 51  GNYVVRVKLGTPGQLLFMVLDTSTDEAFVPCSGCTGCSDTT---FSPKASTSYGPLDCSV 221

Query: 145 DLC 147
             C
Sbjct: 222 PQC 230


>TC220427 weakly similar to GB|AAB60729.1|2160166|F21M12 F21M12.13
           {Arabidopsis thaliana;} , partial (14%)
          Length = 595

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = +2

Query: 85  GEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCKECYNQTTPKFKPSKSSTYKN-IPCS 143
           G Y++   +G+P    + + DT +D  W+ C  C  C + +T  + P  S+TY   + C 
Sbjct: 224 GSYVVRVKLGSPNQLFFMVLDTSTDEAWVPCTGCTGCSSSST-YYSPQASTTYGGAVACY 400

Query: 144 SDLCKSGQQGAVC--TDQNFCEYS 165
           +  C   +    C  T    C ++
Sbjct: 401 APRCAQARGALPCPYTGSKACTFN 472


>TC227094 UP|Q94IA2 (Q94IA2) Aspartic proteinase 1, partial (84%)
          Length = 1619

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 86  EYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCK---ECYNQTTPKFKPSKSSTYK 138
           +Y    ++GT P K   I DTGS  +W+    C     CY     K+K SKSST+K
Sbjct: 27  QYYGEIAIGTSPQKFAVIFDTGSSNLWVPSSKCTFSVACYFHA--KYKSSKSSTFK 188


>BG239716 similar to GP|15809800|gb| AT4g16560/dl4305c {Arabidopsis
           thaliana}, partial (6%)
          Length = 276

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 21/79 (26%), Positives = 36/79 (44%), Gaps = 6/79 (7%)
 Frame = +1

Query: 86  EYLMTYSVGTPPFKLYGI-ADTGSDIVWLQCEP-----CKECYNQTTPKFKPSKSSTYKN 139
           +Y +++++G+ P +   +  DTGSD+VW  C P     C+  +N T    KP   +    
Sbjct: 7   DYTLSFNLGSHPSQSITLYMDTGSDLVWFPCAPFECILCEGKFNAT----KPLNITRSHR 174

Query: 140 IPCSSDLCKSGQQGAVCTD 158
           + C S  C +        D
Sbjct: 175 VSCQSPACSTAHSSVSSHD 231


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.322    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,604,837
Number of Sequences: 63676
Number of extensions: 174661
Number of successful extensions: 1130
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of query: 183
length of database: 12,639,632
effective HSP length: 91
effective length of query: 92
effective length of database: 6,845,116
effective search space: 629750672
effective search space used: 629750672
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)