TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146588.1 - phase: 0 /pseudo
         (191 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NP595172 polyprotein [Glycine max]                                     43  8e-05
AW350384                                                               27  7.5

>NP595172 polyprotein [Glycine max]
          Length = 4659

 Score = 43.1 bits (100), Expect = 8e-05
 Identities = 21/40 (52%), Positives = 27/40 (67%)
 Frame = +1

Query: 2    IDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRT 41
            +D+L+D L GA   SK++ RS YH I  + ED  KTAFRT
Sbjct: 2008 VDELLDELHGAQYFSKLDLRSGYHQILVQPEDREKTAFRT 2127


>AW350384 
          Length = 627

 Score = 26.6 bits (57), Expect = 7.5
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +3

Query: 41  TQVFSSVCRSIHG*YFGIL*IKRRACKTFADCV 73
           TQ+  S+C S+HG*Y  +  IK  +CK  A CV
Sbjct: 414 TQLIQSICLSLHG*YLFLHLIK--SCKGTA-CV 503


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.365    0.164    0.594 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,004,684
Number of Sequences: 63676
Number of extensions: 101898
Number of successful extensions: 919
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of query: 191
length of database: 12,639,632
effective HSP length: 92
effective length of query: 99
effective length of database: 6,781,440
effective search space: 671362560
effective search space used: 671362560
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 56 (26.2 bits)