TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146574.11 + phase: 0 /pseudo
         (738 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG651581                                                               75  6e-26
BU926350                                                              103  2e-22
CO979523                                                               75  8e-14
TC230311 homologue to GB|AAF03534.1|6102610|AF187317 CAF protein...    37  0.041
BU547312 homologue to GP|11559645|gb short integuments 1 {Arabid...    35  0.092
TC211754 similar to UP|Q9M378 (Q9M378) TATA box binding protein ...    34  0.20
TC220447                                                               32  1.0
TC217643 similar to UP|Q40593 (Q40593) Violaxanthin de-epoxidase...    30  3.9
TC229807 weakly similar to UP|O80872 (O80872) Expressed protein ...    30  5.0
TC219991 weakly similar to UP|Q892K6 (Q892K6) ATP-dependent DNA ...    29  8.6

>BG651581 
          Length = 325

 Score = 75.5 bits (184), Expect(2) = 6e-26
 Identities = 37/67 (55%), Positives = 52/67 (77%)
 Frame = +3

Query: 129 KLIVGLRPALLIYMKFTQKPDQTDLVDVEQQLSLTEKAIASSCDICTCLDASKNVPNIEG 188
           +L + LRP + ++MK   KPD+T+LV   +QLSLTE  I ++C+ICTCL+A KNVP++EG
Sbjct: 129 RLALVLRPTISVHMKSMLKPDETELV---KQLSLTEGKILNACNICTCLNA*KNVPDVEG 299

Query: 189 WPVSKVA 195
            P+SKVA
Sbjct: 300 LPISKVA 320



 Score = 61.2 bits (147), Expect(2) = 6e-26
 Identities = 31/44 (70%), Positives = 37/44 (83%), Gaps = 1/44 (2%)
 Frame = +2

Query: 59  DVCPTADAVRAFVEHLVDPMLPAKASIRD-APSISQQQKVAKQV 101
           DVCP  DA++AF+E+LVDP+LPAK SIRD +PS SQ Q VAKQV
Sbjct: 2   DVCPAEDALKAFLEYLVDPVLPAKPSIRDNSPSPSQHQLVAKQV 133


>BU926350 
          Length = 464

 Score =  103 bits (258), Expect = 2e-22
 Identities = 55/86 (63%), Positives = 63/86 (72%)
 Frame = +3

Query: 242 YQKRRVIQNPTKNGLNVDDDEFLQVGYSAVKEATGVNSNDIMLLESYTVYSQRKEKTASR 301
           Y+KRR I+ PTKN  N +++  LQ+GYSAVK+A G+N  DI  LESYTVYSQ K KTASR
Sbjct: 6   YKKRRAIKKPTKNESNSEEEGILQIGYSAVKKAAGINKTDITSLESYTVYSQSKAKTASR 185

Query: 302 FYIMKCSQSTADGSIQVPIKDLIESF 327
           FYIMKCSQ      IQ PIK LIE F
Sbjct: 186 FYIMKCSQLINLEFIQ-PIKSLIERF 260


>CO979523 
          Length = 829

 Score = 75.5 bits (184), Expect = 8e-14
 Identities = 34/42 (80%), Positives = 40/42 (94%)
 Frame = -2

Query: 329 GPLLKKSSSSWTITSVVEYFHVLPYSEIISDWISRLV*FTFP 370
           GPL+K+SSSSWT+TSVVEYFHVL YSE+I +WISRLV*F+FP
Sbjct: 474 GPLVKRSSSSWTVTSVVEYFHVLLYSEVILEWISRLV*FSFP 349


>TC230311 homologue to GB|AAF03534.1|6102610|AF187317 CAF protein
           {Arabidopsis thaliana;} , partial (6%)
          Length = 842

 Score = 36.6 bits (83), Expect = 0.041
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
 Frame = +3

Query: 667 NGTWLRK-LDGICHENNWILPTYSVSLSDGEFHA-----TVRVKGVDFEYS--CEGNTCP 718
           N T+ R+ L+ IC   NW +P Y      G  HA      VRV   D  ++  C G   P
Sbjct: 147 NQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDKGWTDECVGEPMP 326

Query: 719 FPREARDSAAAQML 732
             ++A+DSAA  +L
Sbjct: 327 SVKKAKDSAAVLLL 368


>BU547312 homologue to GP|11559645|gb short integuments 1 {Arabidopsis
           thaliana}, partial (3%)
          Length = 595

 Score = 35.4 bits (80), Expect = 0.092
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
 Frame = -2

Query: 674 LDGICHENNWILPTYSVSLSDGEFHA-----TVRVKGVDFEYS--CEGNTCPFPREARDS 726
           L+ IC   NW +P Y      G  HA      VRV   D  ++  C G   P  ++A+DS
Sbjct: 585 LNDICLRRNWPMPFYRCVNEGGPAHAKRFTXAVRVNTTDRGWTDECVGEPMPSVKKAKDS 406

Query: 727 AAAQML 732
           AA  +L
Sbjct: 405 AAVLLL 388


>TC211754 similar to UP|Q9M378 (Q9M378) TATA box binding protein (TBP)
           associated factor (TAF)-like protein, partial (3%)
          Length = 737

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 11/17 (64%), Positives = 14/17 (81%)
 Frame = +3

Query: 672 RKLDGICHENNWILPTY 688
           ++LD  CHENNW+LP Y
Sbjct: 684 QELDNTCHENNWVLPAY 734


>TC220447 
          Length = 594

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 30/118 (25%), Positives = 45/118 (37%), Gaps = 10/118 (8%)
 Frame = +2

Query: 447 KHEVTESHVSSKGLYIDLDNK------PGSDTKVALNQKEKNGCGITKRCDSVKEDWDMD 500
           KH +++   S    Y  +D +      P SDT   +         +TK  + V E     
Sbjct: 101 KHSLSKPSPSLSLRYCAMDQRHGPQPLPESDT---IGNDSHPKTQLTKETERVVESLSDA 271

Query: 501 VDKSLVLPSKNKECQKHTANTLHISEDQKIENPSVQHHSNE----CTRPSKAEKAVSK 554
             +   L S +K C      TL       +E  +VQH S++     T P+   KA SK
Sbjct: 272 ESRHRELRSSDKPCSDSNLETLGAGVTSSVETLAVQHRSDDLQGSSTAPNSGGKAESK 445


>TC217643 similar to UP|Q40593 (Q40593) Violaxanthin de-epoxidase precursor,
           partial (46%)
          Length = 895

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = -2

Query: 308 SQSTADGSIQVPIKDLIESFRGPLLKKSSSSW 339
           S ST+  SI  P +  I SF  PL K SSSSW
Sbjct: 627 SFSTSPASILSPSRISISSFDNPLKKFSSSSW 532


>TC229807 weakly similar to UP|O80872 (O80872) Expressed protein
           (At2g30010/F23F1.7), partial (14%)
          Length = 1369

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 19/47 (40%), Positives = 24/47 (50%)
 Frame = -2

Query: 95  QKVAKQVHSVVLLYNYYHRKRHPELEFVAFKDFCKLIVGLRPALLIY 141
           Q+V+ +  S VL         HP  EF  FK F   I+GL P LLI+
Sbjct: 264 QRVSNKSQSFVL---------HPSQEFRTFKFFHLTILGLPPKLLIF 151


>TC219991 weakly similar to UP|Q892K6 (Q892K6) ATP-dependent DNA helicase
           recQ  , partial (3%)
          Length = 1030

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 17/62 (27%), Positives = 28/62 (44%), Gaps = 11/62 (17%)
 Frame = +2

Query: 466 NKPGSDTKVALNQKEKNG-----CGITKRCD------SVKEDWDMDVDKSLVLPSKNKEC 514
           N+ G D + A N    +      C + + C+      S  E WD+++D+  +LP    E 
Sbjct: 491 NQTGKDDEPAHNASNLSDPTLETCHVERYCEDGISAKSSLEKWDLEIDEVPILPVNGSEV 670

Query: 515 QK 516
           QK
Sbjct: 671 QK 676


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.324    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,748,298
Number of Sequences: 63676
Number of extensions: 462991
Number of successful extensions: 2865
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2864
length of query: 738
length of database: 12,639,632
effective HSP length: 104
effective length of query: 634
effective length of database: 6,017,328
effective search space: 3814985952
effective search space used: 3814985952
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 63 (28.9 bits)