BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146573.8 + phase: 0
(964 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 416 e-116
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 416 e-116
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 170 2e-42
TC221132 weakly similar to UP|O23529 (O23529) RETROTRANSPOSON li... 92 6e-41
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 153 4e-37
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 149 6e-36
CO982036 144 1e-34
BU548243 143 3e-34
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 142 5e-34
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 138 1e-32
BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa ... 97 2e-31
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti... 124 2e-28
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 94 5e-28
BU549979 122 6e-28
TC232995 122 6e-28
BM307983 122 8e-28
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%) 120 3e-27
BE211208 114 2e-25
AI959950 110 2e-24
BF595216 68 1e-23
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 416 bits (1070), Expect = e-116
Identities = 202/514 (39%), Positives = 312/514 (60%)
Frame = +1
Query: 436 SNHPLPENLEPSNVRQAMQHPHWRQAISEEFNALIRNGTWSLVPPPKNKNIVDCKWLFRI 495
SN +EP NV++A+ W A+ EE RN W LVP P+ N++ KW+F+
Sbjct: 3172 SNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKN 3351
Query: 496 KRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQTIKLILTIALTKGWKMHQLDV 555
K N +G I KARLVA+G+TQ GVDF ETFAPV R ++I+L+L +A +K++Q+DV
Sbjct: 3352 KTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDV 3531
Query: 556 NNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKAIYGLRQAPRAWHDALKTFITSHGF 615
+AFL G LNEEVY+ QP G D P +V +L KA+YGL+QAPRAW++ L F+T G+
Sbjct: 3532 KSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGY 3711
Query: 616 TTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYF 675
D +LF+ L +YVDD++ G L HF+Q + + F + +G YF
Sbjct: 3712 RKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYF 3891
Query: 676 LGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTLYR 735
LG+++ + +FLSQ ++ ++I+++F M+ A TP T L+ ++ + D +LYR
Sbjct: 3892 LGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYR 4071
Query: 736 QIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHFQHLKRLLRYLKATINFGILLKKTNA 795
+IG+L YL +RPD+++A+ +++ P H +KR+L+Y+ T ++GI+ +
Sbjct: 4072 SMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSN 4251
Query: 796 LTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRKQRTVARSSTEAEYRAVATATA 855
L Y DADW G+ DDR STS Y G N ISW S+KQ V+ S+ EAEY A ++ +
Sbjct: 4252 PMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCS 4431
Query: 856 EIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGK 915
+++W+ +L E ++ L CDN+ A + NPV HS+ KHI + +H++R+ V D
Sbjct: 4432 QLVWMKQMLKEYNVE-QDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKV 4608
Query: 916 LQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKV 949
+ + HV T++Q+AD+ TK L +FE+LR K+ +
Sbjct: 4609 ITLKHVDTEEQIADIFTKALDANQFEKLRGKLGI 4710
Score = 46.2 bits (108), Expect = 7e-05
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 16/126 (12%)
Frame = +1
Query: 187 PKYHKNGSFHNHINPSVNNISDSQGQQKQVMCQFCDKSGHTAKECYKIHGYPSKNGVRSA 246
P ++ G+ + + + + ++K+ C +C K GH CY +HG+P +G +S+
Sbjct: 1417 PAKNRTGATMSQHRSRHHGMQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHP-HHGTQSS 1593
Query: 247 ----------AHSA-RYTPHTD-----ETDWILDSGATHHLTNNLDDLHITNPYHGSDKI 290
H A HT + DW LDSG + H+T + L P + +
Sbjct: 1594 NSRKKMMWVPKHKAVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEPC-STSYV 1770
Query: 291 IIGDGN 296
GDG+
Sbjct: 1771 TFGDGS 1788
Score = 33.1 bits (74), Expect = 0.60
Identities = 28/156 (17%), Positives = 67/156 (42%), Gaps = 10/156 (6%)
Frame = +1
Query: 4 FNALLIGYDLFGFVDGTKPEPAEKHVDYNYWRRQDKLIL------HAILSSVEASIITML 57
+ A++ G++ +D E + ++ + +D+L L +A+ + V+ +I ++
Sbjct: 118 WKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLI 297
Query: 58 GNVKNSKDAWDILNKMFASKTRARIMHLKERLTR----TSKGSKSVSEYLQAIKAISDEL 113
+KDAW+IL ++ ++ L+ T+ K + + ++ I I++
Sbjct: 298 NTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFHMNILEIANAC 477
Query: 114 AIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTREN 149
+ + I D+ LV L F A+ ++
Sbjct: 478 TALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQD 585
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 416 bits (1068), Expect = e-116
Identities = 202/514 (39%), Positives = 311/514 (60%)
Frame = +1
Query: 436 SNHPLPENLEPSNVRQAMQHPHWRQAISEEFNALIRNGTWSLVPPPKNKNIVDCKWLFRI 495
SN +EP NV++A+ W A+ EE RN W LVP P+ N++ KW+F+
Sbjct: 3175 SNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKN 3354
Query: 496 KRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQTIKLILTIALTKGWKMHQLDV 555
K N +G I KARLVA+G+TQ GVDF ETFAPV R ++I+L+L +A +K++Q+DV
Sbjct: 3355 KTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDV 3534
Query: 556 NNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKAIYGLRQAPRAWHDALKTFITSHGF 615
+AFL G LNEE Y+ QP G D P +V +L KA+YGL+QAPRAW++ L F+T G+
Sbjct: 3535 KSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGY 3714
Query: 616 TTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYF 675
D +LF+ L +YVDD++ G L HF+Q + + F + +G YF
Sbjct: 3715 RKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYF 3894
Query: 676 LGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTLYR 735
LG+++ + +FLSQ K+ ++I+++F M+ A TP T L+ ++ + D +LYR
Sbjct: 3895 LGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYR 4074
Query: 736 QIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHFQHLKRLLRYLKATINFGILLKKTNA 795
+IG+L YL +RPD+++A+ +++ P H +KR+L+Y+ T ++GI+ +
Sbjct: 4075 SMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSD 4254
Query: 796 LTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRKQRTVARSSTEAEYRAVATATA 855
L Y DADW G+ DDR STS Y G N ISW S+KQ V+ S+ EAEY A ++ +
Sbjct: 4255 SMLVGYCDADWAGSADDRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCS 4434
Query: 856 EIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGK 915
+++W+ +L E ++ L CDN+ A + NPV HS+ KHI + +H++R+ V D
Sbjct: 4435 QLVWMKQMLKEYNVE-QDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKV 4611
Query: 916 LQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKV 949
+ + HV T++Q+AD+ TK L +FE+LR K+ +
Sbjct: 4612 ITLEHVDTEEQIADIFTKALDANQFEKLRGKLGI 4713
Score = 45.8 bits (107), Expect = 9e-05
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 16/126 (12%)
Frame = +1
Query: 187 PKYHKNGSFHNHINPSVNNISDSQGQQKQVMCQFCDKSGHTAKECYKIHGYPSKNGVRSA 246
P + G+ + + + ++K+ C +C K GH CY +HG+P +G +S+
Sbjct: 1420 PAKNSTGATMSQHRSRHHGTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHP-HHGTQSS 1596
Query: 247 AHSAR--YTP---------HTD-----ETDWILDSGATHHLTNNLDDLHITNPYHGSDKI 290
+ + + P HT + DW LDSG + H+T + L P + +
Sbjct: 1597 SSGRKMMWVPKHKIVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPC-STSYV 1773
Query: 291 IIGDGN 296
GDG+
Sbjct: 1774 TFGDGS 1791
Score = 32.7 bits (73), Expect = 0.79
Identities = 27/156 (17%), Positives = 67/156 (42%), Gaps = 10/156 (6%)
Frame = +1
Query: 4 FNALLIGYDLFGFVDGTKPEPAEKHVDYNYWRRQDKLIL------HAILSSVEASIITML 57
+ A++ G++ +D E + ++ + +D+L L +A+ + V+ +I ++
Sbjct: 118 WKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLI 297
Query: 58 GNVKNSKDAWDILNKMFASKTRARIMHLKERLTR----TSKGSKSVSEYLQAIKAISDEL 113
+KDAW+IL ++ ++ L+ T+ K + + ++ I I++
Sbjct: 298 NTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFHMNILEIANAC 477
Query: 114 AIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTREN 149
+ + + D+ LV L F A+ ++
Sbjct: 478 TALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQD 585
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein,
partial (7%)
Length = 804
Score = 170 bits (431), Expect = 2e-42
Identities = 86/221 (38%), Positives = 136/221 (60%), Gaps = 3/221 (1%)
Frame = +1
Query: 730 DSTLYRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHFQHLKRLLRYLKATINFGIL 789
D T +R++IG+L+YL +RP++ FA++ +S+FM +P H Q KR+LR +K TI G+L
Sbjct: 10 DVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVL 189
Query: 790 LK---KTNALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRKQRTVARSSTEAE 846
K+ L YTD+DW + + ST YL + P++ S+KQ +A S+ EAE
Sbjct: 190 FPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAE 369
Query: 847 YRAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHF 906
Y A + + +W+ NLL EL + KP LL DN A L +P LH + KHI L +H+
Sbjct: 370 YVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHY 549
Query: 907 VREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKM 947
+R+QV G + V + ++QLADL+TKP+ ++F+++ S++
Sbjct: 550 IRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSEL 672
>TC221132 weakly similar to UP|O23529 (O23529) RETROTRANSPOSON like protein,
partial (5%)
Length = 799
Score = 91.7 bits (226), Expect(3) = 6e-41
Identities = 44/103 (42%), Positives = 64/103 (61%)
Frame = +1
Query: 754 AINKLSQFMHKPTSLHFQHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDR 813
+++ SQFM PT + Q KR+LRYLK TI+FG+ L+ + L+ + DA+W N D
Sbjct: 118 SLSTSSQFMKDPTKIRMQATKRVLRYLKGTIDFGLQLRSSPDQHLRAFYDANWVDNTSDI 297
Query: 814 TSTSAYLIYFGGNPISWLSRKQRTVARSSTEAEYRAVATATAE 856
ST AY++YFG + ISW +KQ + +SST+ EY + T E
Sbjct: 298 RSTGAYVVYFGLSVISWSCKKQSIIDKSSTKVEYHKITTTIIE 426
Score = 73.9 bits (180), Expect(3) = 6e-41
Identities = 40/97 (41%), Positives = 58/97 (59%)
Frame = +2
Query: 868 HIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQL 927
HI P + N+GA YLC+NPV H MKH+++D+ FV++ V + +L+VSHV +
Sbjct: 428 HI*PDPSPTMYSYNIGAMYLCANPVFHLCMKHLTIDHLFVQDLVANKQLRVSHVPSCH*H 607
Query: 928 ADLLTKPLPRAKFEELRSKMKVTDGNFILRGHIGELI 964
DL TK L ++ + + K+ V ILR HIG LI
Sbjct: 608 VDLFTKALVSSRHKFMMDKIGVVSTTTILREHIGLLI 718
Score = 42.4 bits (98), Expect(3) = 6e-41
Identities = 22/46 (47%), Positives = 30/46 (64%)
Frame = +3
Query: 714 LSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLS 759
L TT L D + D +Y Q++ +LQYL+LT PD++F INKLS
Sbjct: 3 LLTTCNLASGD-VPSCDGIVYCQLVDSLQYLSLTCPDIAFPINKLS 137
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 153 bits (386), Expect = 4e-37
Identities = 70/150 (46%), Positives = 101/150 (66%)
Frame = -3
Query: 461 AISEEFNALIRNGTWSLVPPPKNKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPG 520
A+ EE N RN W LV P+N ++ KW+FR K + G I KARLVAKG+ Q G
Sbjct: 458 AMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEG 279
Query: 521 VDFKETFAPVVRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQ 580
+D++ET+APV R + I+++L +K++Q+DV +AFL G + EEVY+ QPPG +
Sbjct: 278 IDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIPD 99
Query: 581 QPTYVCKLHKAIYGLRQAPRAWHDALKTFI 610
+PT+V KL KA+YGL+QAPRAW++ + F+
Sbjct: 98 KPTHVYKLQKALYGLKQAPRAWYERISNFL 9
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 149 bits (376), Expect = 6e-36
Identities = 64/128 (50%), Positives = 89/128 (69%)
Frame = +3
Query: 446 PSNVRQAMQHPHWRQAISEEFNALIRNGTWSLVPPPKNKNIVDCKWLFRIKRNPDGTIDH 505
PS +R+A+ HP WRQA+ +E AL NGTW LVP P K V C+W++ +K P+G +D
Sbjct: 21 PSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGPNGKVDR 200
Query: 506 YKARLVAKGFTQCPGVDFKETFAPVVRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLN 565
KARLVAKG+TQ G+++ +TF+PV T++L L +A + W +HQLD+ NAFL G L
Sbjct: 201 LKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAFLHGDLE 380
Query: 566 EEVYMAQP 573
E++YM QP
Sbjct: 381 EDIYMEQP 404
>CO982036
Length = 674
Score = 144 bits (364), Expect = 1e-34
Identities = 78/213 (36%), Positives = 124/213 (57%), Gaps = 3/213 (1%)
Frame = -2
Query: 627 YASGTTLAYFLVYVDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTV 686
Y + Y LVYVD +++TG+ + + + L++ F LK +G YF+ IE+ +
Sbjct: 673 YKTHILTVYLLVYVD-IIITGSSCTLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPDL 497
Query: 687 LFLSQHKFIRDILQRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNL 746
LF S I +I R A+P +P++TT L+ +D + T YR ++GALQY +
Sbjct: 496 LF-SLRTSIFEIFCRKPR*QAQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTV 320
Query: 747 TRPDLSFAINKLSQFMHKPTSLHFQHLKRLLRYLKATINFGILLK---KTNALTLQVYTD 803
RP++SFA+NK+ QFM P H+ +KR+LRYLK ++++G+ LK + L ++ + D
Sbjct: 319 IRPEISFAVNKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCD 140
Query: 804 ADWDGNIDDRTSTSAYLIYFGGNPISWLSRKQR 836
ADW +DD+ STS ++ G N ISW KQ+
Sbjct: 139 ADWASAVDDKRSTSGAAVFLGPNLISWWXXKQQ 41
>BU548243
Length = 599
Score = 143 bits (361), Expect = 3e-34
Identities = 72/147 (48%), Positives = 96/147 (64%)
Frame = -1
Query: 803 DADWDGNIDDRTSTSAYLIYFGGNPISWLSRKQRTVARSSTEAEYRAVATATAEIMWITN 862
DA W ++DD ST I+ G N ISW SRKQ+ A+SSTEAEYR++A +AE+ WI
Sbjct: 587 DAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELTWIQA 408
Query: 863 LLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVS 922
LL EL IP + PP++LCDN A + N V HS+ KH+ +D FV E+V +LQ+ H+
Sbjct: 407 LLMELQIPFT-PPVILCDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQIFHIP 231
Query: 923 TKDQLADLLTKPLPRAKFEELRSKMKV 949
DQ A +LTKPL A+F L+SK+ V
Sbjct: 230 ALDQWAGILTKPLSSARFTFLKSKLTV 150
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 142 bits (359), Expect = 5e-34
Identities = 62/125 (49%), Positives = 86/125 (68%)
Frame = -2
Query: 478 VPPPKNKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQTIK 537
VP P K V C+W++ +K P G +D KARLVAKG+TQ G+D+ +TF+PV + T++
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 538 LILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKAIYGLRQ 597
L L +A W +HQLD+ NAFL G L E++YM QPPG + VCKLH+++YGL+Q
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 598 APRAW 602
+PRAW
Sbjct: 46 SPRAW 32
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment),
partial (30%)
Length = 687
Score = 138 bits (347), Expect = 1e-32
Identities = 69/154 (44%), Positives = 91/154 (58%)
Frame = +2
Query: 798 LQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRKQRTVARSSTEAEYRAVATATAEI 857
L Y DADW G DR STS Y ++ GGN +SW S+KQ VARSS EAEYR++A T E+
Sbjct: 17 LSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCEL 196
Query: 858 MWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQ 917
MWI L EL L CDN A ++ SNPV H + KHI +D HF+RE++ ++
Sbjct: 197 MWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEIV 376
Query: 918 VSHVSTKDQLADLLTKPLPRAKFEELRSKMKVTD 951
+ + DQ D+LTK L K + + SK+ D
Sbjct: 377 TEFIGSNDQPVDILTKSLRGPKIQIVCSKLGAYD 478
>BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa (japonica
cultivar-group)}, partial (18%)
Length = 430
Score = 97.4 bits (241), Expect(2) = 2e-31
Identities = 45/87 (51%), Positives = 61/87 (69%)
Frame = +1
Query: 445 EPSNVRQAMQHPHWRQAISEEFNALIRNGTWSLVPPPKNKNIVDCKWLFRIKRNPDGTID 504
EPS V+QA+ P WRQA+ +F+AL+ N T +L P K +DCKW+FRIK N GT++
Sbjct: 31 EPSTVKQALISPPWRQAMQADFDALMENKTLTLTSLPSGKAAIDCKWVFRIKENLYGTLN 210
Query: 505 HYKARLVAKGFTQCPGVDFKETFAPVV 531
Y++RLVAKGF G D+ ETF+PV+
Sbjct: 211 RYRSRLVAKGFHLKFGCDYSETFSPVI 291
Score = 58.2 bits (139), Expect(2) = 2e-31
Identities = 27/43 (62%), Positives = 32/43 (73%)
Frame = +3
Query: 535 TIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLK 577
TI+LIL IALT W + Q+D+NNAFL G L EEVYM Q PG +
Sbjct: 300 TIRLILFIALTNHWPLQQVDINNAFLHGLLTEEVYMVQLPGFE 428
>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
Length = 558
Score = 124 bits (311), Expect = 2e-28
Identities = 73/182 (40%), Positives = 103/182 (56%), Gaps = 4/182 (2%)
Frame = +1
Query: 501 GTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQTIKLILTIALTKGWKMHQLDVNNAFL 560
GTID +KARLVAK +TQ G D+ TF+PV + + L+ ++A+ W + LD NAFL
Sbjct: 28 GTIDQFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAFL 207
Query: 561 QGSLNEEVYMAQPPG-LKDSQQPTYVCKLHKAIYGLRQAPRAW---HDALKTFITSHGFT 616
G L EEVYM QP G + + VC+L ++ YGL+Q+PRAW + + SH
Sbjct: 208 HGYLEEEVYMEQPLGFVAQGESSNMVCQLCRSFYGLKQSPRAWPFLYCGAAIWYDSH--- 378
Query: 617 TSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYFL 676
++D S+F S Y +VYVDD+ +TG+D + L +F K +G YFL
Sbjct: 379 --EADHSVFYCHSPQGCIYLIVYVDDIGITGSDQHGIT*LK*XLCCQFQTKDLGKLRYFL 552
Query: 677 GI 678
GI
Sbjct: 553 GI 558
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 94.0 bits (232), Expect(2) = 5e-28
Identities = 53/180 (29%), Positives = 88/180 (48%)
Frame = +3
Query: 638 VYVDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRD 697
+YVDD++ F + + + F G + LG+++I +F+ Q K+ +
Sbjct: 501 IYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIHQEKYTKS 680
Query: 698 ILQRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINK 757
L+RF MD AKP TP+ ++ + ++ Y +I +L YL +RPD+ F +
Sbjct: 681 HLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDIVFVVCL 860
Query: 758 LSQFMHKPTSLHFQHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTS 817
++F P H +KR+LRYL T N + KK + L Y D + G+ +R STS
Sbjct: 861 CARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGYCDVYFAGDKVERKSTS 1040
Score = 50.1 bits (118), Expect(2) = 5e-28
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = +2
Query: 587 KLHKAIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYF 636
K +YGL+QA RAW++ L +F+ S+GFT +DP+LF A L+Y+
Sbjct: 347 KTLSCVYGLKQALRAWYERLSSFLVSNGFTRGITDPALFRKAQKGNLSYY 496
>BU549979
Length = 615
Score = 122 bits (307), Expect = 6e-28
Identities = 61/195 (31%), Positives = 113/195 (57%), Gaps = 2/195 (1%)
Frame = -1
Query: 758 LSQFMHKPTSLHFQHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTS 817
L ++ P H++ K+++RYL+ T ++ ++ K+TN L + Y+D+D+ G +D R STS
Sbjct: 612 LGRYQSNPGIDHWKTAKKVMRYLQGTKDYMLMYKQTNCLEVIGYSDSDFAGCVDSRRSTS 433
Query: 818 AYLIYFGGNPISWLSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHI--PLSKPP 875
Y+ +SW S KQ +A S+ E E+ AT+ +W+ + +S L + +S+P
Sbjct: 432 GYIFMLADGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRVVDSISRPL 253
Query: 876 LLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPL 935
L CDN A ++ N ++ KHI + Y +RE+V++ K+ + HV+T+ + D LTK +
Sbjct: 252 KLYCDNFAAVFMAKNNKSGNRSKHIDIKYLVIRERVKEKKVVIEHVNTELMIVDPLTKGM 73
Query: 936 PRAKFEELRSKMKVT 950
F++ +M+++
Sbjct: 72 TPKNFKDHVVRMELS 28
>TC232995
Length = 1009
Score = 122 bits (307), Expect = 6e-28
Identities = 59/168 (35%), Positives = 97/168 (57%)
Frame = +2
Query: 572 QPPGLKDSQQPTYVCKLHKAIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGT 631
QPPG + S +P +V KL KA+YGL+QAPRAW++ L F+ F+ + D +LFI
Sbjct: 8 QPPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRKHN 187
Query: 632 TLAYFLVYVDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQ 691
+ +YVDD++ + S F + + F + MG YFLG+++ ++ +F++Q
Sbjct: 188 DILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIFINQ 367
Query: 692 HKFIRDILQRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTLYRQIIG 739
K+ +++++RF MD+AK TP+ST L ++ + D YR IG
Sbjct: 368 SKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIG 511
>BM307983
Length = 406
Score = 122 bits (306), Expect = 8e-28
Identities = 66/139 (47%), Positives = 85/139 (60%), Gaps = 6/139 (4%)
Frame = +2
Query: 487 VDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQTIKLILTIALTK 546
V C+W++ +K D T+D YKARLVAKG+ Q G+D++ETFA Q K I + + +
Sbjct: 2 VGCRWIYTVKY*ADDTLDRYKARLVAKGYIQTYGIDYEETFA-----QWQK*IQSGSSSP 166
Query: 547 ------GWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKAIYGLRQAPR 600
GW+MHQ DV NAFL GSL EEVYM PPG S VC+L KA+YGL+Q+PR
Sbjct: 167 *QQAQFGWEMHQFDVKNAFLHGSLEEEVYMEIPPGYGASNGGNKVCRLKKALYGLKQSPR 346
Query: 601 AWHDALKTFITSHGFTTSQ 619
AW + S G+ SQ
Sbjct: 347 AWFGRFTQAMLSLGYKQSQ 403
>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
Length = 493
Score = 120 bits (301), Expect = 3e-27
Identities = 57/141 (40%), Positives = 84/141 (59%)
Frame = +3
Query: 811 DDRTSTSAYLIYFGGNPISWLSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIP 870
DDR ST+ ++ + G +W+S+KQ V S+ EAEY A + +W+ NLL EL +P
Sbjct: 9 DDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKMP 188
Query: 871 LSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADL 930
+P + DN A L NPV H K KHI YHF+RE + ++++ +V ++DQ AD+
Sbjct: 189 QEEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKLKYVMSQDQAADI 368
Query: 931 LTKPLPRAKFEELRSKMKVTD 951
TKPL F +LRS + VT+
Sbjct: 369 FTKPLKLETFVKLRSMLGVTN 431
>BE211208
Length = 413
Score = 114 bits (285), Expect = 2e-25
Identities = 59/131 (45%), Positives = 85/131 (64%), Gaps = 2/131 (1%)
Frame = +2
Query: 633 LAYFLVYVDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYFLGIEL--IPSKTVLFLS 690
L Y LVYVDD+++TG + + L++ FSLK +G YFLGIE+ P+ +VL L+
Sbjct: 23 LVYLLVYVDDIIITGRSNYLIQSLVHHLNSNFSLKQLGQLDYFLGIEVHHTPTGSVL-LT 199
Query: 691 QHKFIRDILQRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPD 750
Q K+I D+L + DM AKP +P+ T L+ N +D T+YR ++GALQY +TRP+
Sbjct: 200 QSKYICDLLHKTDMAEAKPISSPMVTNLRLSKNGDDLLSDPTMYRSVVGALQYPTITRPE 379
Query: 751 LSFAINKLSQF 761
+SFA NK+ QF
Sbjct: 380 ISFAANKVCQF 412
>AI959950
Length = 466
Score = 110 bits (276), Expect = 2e-24
Identities = 55/131 (41%), Positives = 83/131 (62%)
Frame = -1
Query: 460 QAISEEFNALIRNGTWSLVPPPKNKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCP 519
+A+ EE + +N LV PK K +V KW+F K + DG + YKARLVAKG++Q
Sbjct: 394 KAMQEELDQFQKNNV*KLVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQE 215
Query: 520 GVDFKETFAPVVRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDS 579
G+D+ +TFA V R + I ++L+ A K++Q+DV +AFL G + +EVY+ QPPG ++
Sbjct: 214 GIDYPKTFALVARLEVICILLSFATYSNMKLYQMDVKSAFLNGLIQKEVYVEQPPGFENE 35
Query: 580 QQPTYVCKLHK 590
+V KL+K
Sbjct: 34 TLHQHVFKLNK 2
>BF595216
Length = 421
Score = 67.8 bits (164), Expect(2) = 1e-23
Identities = 34/50 (68%), Positives = 36/50 (72%)
Frame = +3
Query: 544 LTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKAIY 593
LT W + QLDVNNAFL G L EEVYM QPPG DS + VCKLHKAIY
Sbjct: 273 LTYHWPIQQLDVNNAFLNGILQEEVYMQQPPGF-DSTTKSLVCKLHKAIY 419
Score = 61.6 bits (148), Expect(2) = 1e-23
Identities = 28/50 (56%), Positives = 40/50 (80%)
Frame = +1
Query: 496 KRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQTIKLILTIALT 545
K N DGT++ YKA+LVAKGF Q G D+ ETF+ V++P T++L+LT+A+T
Sbjct: 124 KENSDGTVNKYKAKLVAKGFHQQYGTDYIETFSLVIKPITMRLLLTLAVT 273
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,698,475
Number of Sequences: 63676
Number of extensions: 774239
Number of successful extensions: 10044
Number of sequences better than 10.0: 737
Number of HSP's better than 10.0 without gapping: 6835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8600
length of query: 964
length of database: 12,639,632
effective HSP length: 106
effective length of query: 858
effective length of database: 5,889,976
effective search space: 5053599408
effective search space used: 5053599408
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Medicago: description of AC146573.8