TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146573.11 + phase: 2 /pseudo
         (1025 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NP005385 DNA-directed RNA polymerase                                   47  3e-05
TC223568 similar to UP|Q9SVY0 (Q9SVY0) DNA-directed RNA polymera...    41  0.003
TC229789 homologue to UP|Q9FVK4 (Q9FVK4) Resistance protein LM17...    31  2.4
TC212476                                                               30  4.1
TC232694                                                               30  5.4
TC204698 homologue to UP|Q8L3U4 (Q8L3U4) AT5g36790/f5h8_20, part...    30  7.1
TC204700 similar to UP|Q9LHT3 (Q9LHT3) N-glyceraldehyde-2-phosph...    30  7.1
TC205261 similar to UP|Q6VAG2 (Q6VAG2) Zinc-finger protein, part...    29  9.2
TC223028 weakly similar to UP|Q94CH7 (Q94CH7) Family II lipase E...    29  9.2

>NP005385 DNA-directed RNA polymerase
          Length = 2934

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
 Frame = +1

Query: 736 VESSFLTGLNPLECFVHSVTNRDSSFSD--NADLPGTLTRRLMFFMRDMYDAYDGTVRNL 793
           VE+S+L GL P E F H++  R+            G + RRL+  M D+   YDGTVRN 
Sbjct: 28  VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMLKYDGTVRNS 207

Query: 794 YGNQLIQFSY 803
            G+ +IQF Y
Sbjct: 208 LGD-VIQFLY 234


>TC223568 similar to UP|Q9SVY0 (Q9SVY0) DNA-directed RNA polymerase I 190K
           chain-like protein  , partial (7%)
          Length = 799

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 21/48 (43%), Positives = 29/48 (59%)
 Frame = +1

Query: 335 GDIFYRPLVDGDKVLINRPPSIHQHSMIALTVRVLPISSVVSINPICC 382
           G + YR L DGD VL NR P++H+ S++A  VRVL     V ++   C
Sbjct: 202 GKVVYRHLKDGDVVLANRQPTLHKPSIMAHIVRVLKGEKTVRMHYANC 345


>TC229789 homologue to UP|Q9FVK4 (Q9FVK4) Resistance protein LM17 (Fragment),
           partial (94%)
          Length = 2104

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 18/68 (26%), Positives = 34/68 (49%), Gaps = 1/68 (1%)
 Frame = +2

Query: 801 FSYDAEEDSSCDSYFREDIIGGEPVGALSACAVSEAAYSALSQPISLLEASPLLN-LKNV 859
           + Y+A  DS   ++  ED+  GE +      A+ E+  + +   I+   +S  L+ L  +
Sbjct: 200 YLYEALHDSGIHTFIDEDLKRGEEITPAIVKAIEESRIAIIVLSINYASSSSCLDELATI 379

Query: 860 LECGSRKK 867
           L+C  RK+
Sbjct: 380 LDCLKRKR 403


>TC212476 
          Length = 1014

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -3

Query: 794 YGNQLIQFSYDAEEDSSCDSY 814
           YG+ L++F+Y AE+D +CD +
Sbjct: 163 YGSYLLKFNYGAEKDKTCDPF 101


>TC232694 
          Length = 794

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 17/42 (40%), Positives = 24/42 (56%), Gaps = 3/42 (7%)
 Frame = -3

Query: 349 LINRPPSIHQHSMI---ALTVRVLPISSVVSINPICCSPLRG 387
           LI  PP +H  ++I   A+  + LPISS V +NP   +P  G
Sbjct: 786 LILTPPLVHCDTLIP*LAIQSQALPISSSVGVNP*ASAPAIG 661


>TC204698 homologue to UP|Q8L3U4 (Q8L3U4) AT5g36790/f5h8_20, partial (82%)
          Length = 1336

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 411 LVALDRQLINGQSGGNLLSLSQDSLTAAHLLLED 444
           L+ + + L NGQ G   L+LS D L  +H LLE+
Sbjct: 801 LLLISQMLKNGQVGAQWLALSVDLLNVSH*LLEN 902


>TC204700 similar to UP|Q9LHT3 (Q9LHT3)
           N-glyceraldehyde-2-phosphotransferase-like, partial
           (77%)
          Length = 717

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 411 LVALDRQLINGQSGGNLLSLSQDSLTAAHLLLED 444
           L+ + + L NGQ G   L+LS D L  +H LLE+
Sbjct: 327 LLLISQMLKNGQVGAQWLALSVDLLNVSH*LLEN 428


>TC205261 similar to UP|Q6VAG2 (Q6VAG2) Zinc-finger protein, partial (68%)
          Length = 707

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 16/73 (21%), Positives = 31/73 (41%)
 Frame = -2

Query: 512 SCSESSGWLRDSENNVFQSLVEHFQGKILDVLHGAQKALCEWLSMTGFSVSLSDLYLSSD 571
           SCS     + +++N  F+SL       ++  LH     LC W++ +  S ++      + 
Sbjct: 295 SCSSKEATIINAKNGAFRSLAS----SLIVRLHYFSDYLCSWVNRSSHSCTVPSNRKENS 128

Query: 572 SYARKNMMEEISY 584
               KN +  + Y
Sbjct: 127 IMKEKNNLRRVRY 89


>TC223028 weakly similar to UP|Q94CH7 (Q94CH7) Family II lipase EXL2, partial
           (44%)
          Length = 640

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 694 RLSYRIPRELSCAGWNSQKGLHSMEMS 720
           RL  RIPR+++ +GW  Q  LH  + S
Sbjct: 476 RLVQRIPRQITRSGWRRQNKLHLSQQS 556


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.328    0.141    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,172,324
Number of Sequences: 63676
Number of extensions: 689924
Number of successful extensions: 4585
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4585
length of query: 1025
length of database: 12,639,632
effective HSP length: 107
effective length of query: 918
effective length of database: 5,826,300
effective search space: 5348543400
effective search space used: 5348543400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 64 (29.3 bits)