BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146571.3 + phase: 0
(444 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI785996 similar to GP|16974566|gb| AT5g51140/MWD22_8 {Arabidops... 33 0.26
BQ273553 similar to GP|6721111|gb|A T4O12.25 {Arabidopsis thalia... 32 0.57
TC209694 similar to UP|Q8LGA2 (Q8LGA2) Seed maturation-like prot... 31 0.98
TC219149 weakly similar to UP|SR40_YEAST (P32583) Suppressor pro... 30 1.7
TC206455 30 2.9
AW395903 28 6.4
TC231148 28 6.4
TC219108 similar to PIR|G86188|G86188 protein T25N20.4 [imported... 28 6.4
TC224437 weakly similar to UP|Q97H99 (Q97H99) Predicted pseudour... 28 8.3
TC226355 similar to UP|Q6TF27 (Q6TF27) Rapid alkalinization fact... 28 8.3
>BI785996 similar to GP|16974566|gb| AT5g51140/MWD22_8 {Arabidopsis
thaliana}, partial (18%)
Length = 399
Score = 33.1 bits (74), Expect = 0.26
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 227 LTTPLITTHQIDNCTEGCVVLARNKEYCSVFHCKIREKKVKKIYLALAASPLP 279
L T + H++D G ++LARN +F +I V K Y+A P
Sbjct: 89 LDTNISAVHRLDRLVSGLLILARNAAKADIFRQQIEAGLVHKQYIAKVGGEFP 247
>BQ273553 similar to GP|6721111|gb|A T4O12.25 {Arabidopsis thaliana}, partial
(6%)
Length = 420
Score = 32.0 bits (71), Expect = 0.57
Identities = 14/26 (53%), Positives = 17/26 (64%)
Frame = +2
Query: 345 LLTGRTHQIRAQFAACKAPIIGDTMY 370
L TGRTHQIRA P++GD +Y
Sbjct: 80 LETGRTHQIRAHAKYLGVPLLGDELY 157
>TC209694 similar to UP|Q8LGA2 (Q8LGA2) Seed maturation-like protein, partial
(40%)
Length = 810
Score = 31.2 bits (69), Expect = 0.98
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +1
Query: 61 PSHKIPPRIEHLVVSQEGPVLQYICKALDLPHLFVADLIQFGAVYFALVSPEPPPTATAE 120
P H+ P ++ HL + P Q + +A L H +A L + L +P PPPT
Sbjct: 238 PPHRAPRQLRHL--QRRVPRRQRLHEADHLHHARIATLRSLRRHHHRLQTPPPPPTLLLH 411
Query: 121 QIRI 124
+ R+
Sbjct: 412 RHRV 423
>TC219149 weakly similar to UP|SR40_YEAST (P32583) Suppressor protein SRP40,
partial (8%)
Length = 1158
Score = 30.4 bits (67), Expect = 1.7
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +1
Query: 360 CKAPIIGDTMYMPAAIAEMIN---PGLNPFGKYNKDFSSESEKKTAVINW 406
C P G+ M + I +I P +PF N+ F + ++ KTA+ NW
Sbjct: 103 CSMPFFGNLMMIFLLILYLIPLVIPRFSPFHLVNQGFGAGAQLKTAIGNW 252
>TC206455
Length = 799
Score = 29.6 bits (65), Expect = 2.9
Identities = 16/49 (32%), Positives = 26/49 (52%), Gaps = 6/49 (12%)
Frame = +2
Query: 9 ILGVPDTASAV--PISVN----KHLNKHEFGWCCRISNDSNAISETVTY 51
+L + D + V P ++N H N + F +CCRI S++IS + Y
Sbjct: 62 LLAISDLSVVVWSPSTINHQRRSHTNNNGFRFCCRIPRASDSISRRIFY 208
>AW395903
Length = 215
Score = 28.5 bits (62), Expect = 6.4
Identities = 13/42 (30%), Positives = 18/42 (41%)
Frame = +3
Query: 213 IEESCVTFATRALGLTTPLITTHQIDNCTEGCVVLARNKEYC 254
++++C+ T L P TT NC GC R E C
Sbjct: 39 LQDACLLLPTLCLSFDVPGQTTSLFTNCEGGCNTGLRRPENC 164
>TC231148
Length = 556
Score = 28.5 bits (62), Expect = 6.4
Identities = 17/63 (26%), Positives = 26/63 (40%)
Frame = +3
Query: 228 TTPLITTHQIDNCTEGCVVLARNKEYCSVFHCKIREKKVKKIYLALAASPLPIGIIKHYM 287
T P IT +++NC CV + Y S F ++ + + YL +I H
Sbjct: 219 TCPRITCLKLENCDLSCVGVNLLLHYLSTFKGPLKSLSIAENYLGRQVVEAIGNLISHTK 398
Query: 288 RPT 290
R T
Sbjct: 399 RST 407
>TC219108 similar to PIR|G86188|G86188 protein T25N20.4 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(57%)
Length = 653
Score = 28.5 bits (62), Expect = 6.4
Identities = 20/59 (33%), Positives = 29/59 (48%), Gaps = 1/59 (1%)
Frame = +3
Query: 143 KTIREAQKTFRVTDANQFVEPGTYLRVHVHPKRFPRCYEIDWR-SRIIAVEESYVVLDK 200
K+ RE KT R + + + R K R Y WR ++ +A EESYV+L+K
Sbjct: 54 KSAREVVKTMRESLNEGTDDNAKFRRTADSAKESIREYLGSWRGNQTVAQEESYVILEK 230
>TC224437 weakly similar to UP|Q97H99 (Q97H99) Predicted pseudouridylate
synthase, YLYB B.subtilis ortholog, partial (11%)
Length = 543
Score = 28.1 bits (61), Expect = 8.3
Identities = 10/29 (34%), Positives = 18/29 (61%)
Frame = +2
Query: 342 KINLLTGRTHQIRAQFAACKAPIIGDTMY 370
++ + +GR HQIR + P++GD +Y
Sbjct: 62 QVKIQSGRPHQIRIHLSFIGHPLLGDPLY 148
>TC226355 similar to UP|Q6TF27 (Q6TF27) Rapid alkalinization factor 3,
partial (48%)
Length = 746
Score = 28.1 bits (61), Expect = 8.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 322 AIVVQDEYCGWPSQDYAYECKINLLTGRTH 351
A+ V + +CGWP Q +E + LL R H
Sbjct: 206 AVFVVERHCGWPLQRLRHEVQACLLHLRLH 117
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.137 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,276,506
Number of Sequences: 63676
Number of extensions: 356954
Number of successful extensions: 1815
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1814
length of query: 444
length of database: 12,639,632
effective HSP length: 100
effective length of query: 344
effective length of database: 6,272,032
effective search space: 2157579008
effective search space used: 2157579008
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Medicago: description of AC146571.3