TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146569.5 + phase: 0 
         (211 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC206581                                                               29  1.4
TC208963                                                               28  3.0
TC218669 similar to UP|Q6PLP6 (Q6PLP6) Cell wall protein GP2 (Fr...    28  3.0
TC225942 similar to UP|O81642 (O81642) IAA-Ala hydrolase (IAR3) ...    28  4.0
TC225937 similar to UP|O81642 (O81642) IAA-Ala hydrolase (IAR3) ...    27  6.8
CO982357                                                               27  8.9

>TC206581 
          Length = 1252

 Score = 29.3 bits (64), Expect = 1.4
 Identities = 15/54 (27%), Positives = 25/54 (45%)
 Frame = +3

Query: 96  IFNFPHSGFFQNESDAWVIGEHKKLVSGFLGSAKYMLNVGGEIHITHKTAHPFS 149
           I  F HS  F ++S   ++  H K +        Y++NVGG   +  +  H F+
Sbjct: 246 ILPFAHSMIFTHDSSKLIVAGHDKRI--------YVVNVGGPDEVKSELLHTFT 383


>TC208963 
          Length = 1163

 Score = 28.1 bits (61), Expect = 3.0
 Identities = 22/120 (18%), Positives = 54/120 (44%), Gaps = 2/120 (1%)
 Frame = +1

Query: 16  LLVGEGDFSFALCLAKAFGSAVNMVATSLDDRGSLAMKYRGAIRNLIELEGLGCTIMH-- 73
           ++V  GD +    +   F S+ N++      R  +    +   ++++ L+     +M   
Sbjct: 28  VIVTVGDIALMSAVQVVFPSSSNLLC-----RFHINQNVKAKCKSIVHLKEKQELMMDAW 192

Query: 74  EVDVHNMNQHHQLKHHNFFDRIIFNFPHSGFFQNESDAWVIGEHKKLVSGFLGSAKYMLN 133
           +V V++ N+   ++   FF+ +  +FP  G +    + W+I   +K V+ +     ++ N
Sbjct: 193 DVVVNSPNEGEYMQRLAFFENVCLDFPILGDY--VKNTWLIPHKEKFVTAWTNQVMHLGN 366


>TC218669 similar to UP|Q6PLP6 (Q6PLP6) Cell wall protein GP2 (Fragment),
           partial (3%)
          Length = 807

 Score = 28.1 bits (61), Expect = 3.0
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
 Frame = -3

Query: 66  GLGCTIMHEVDVHNMNQHHQLKHHNFFDRIIFNFPHSGFFQNESDAWVIGEHKKLVSGFL 125
           G  C+  H  + HN+ + H L H        F F H        +  +     +     +
Sbjct: 433 GTACSKAHNPNTHNLPRGHTLPHLPQLKMFTFVFKHKRLQH*RLNVHLTPHTPQFSLSLV 254

Query: 126 GSAK---YMLNVGGE---IHITHKTAHP---FSNWNIKNLAENE 160
            S +     +++GG    +HI+    HP   FS+++I ++ E+E
Sbjct: 253 TSTQRSPQHIDLGGNSPLLHISGLPLHPMIWFSSFSINDVDEDE 122


>TC225942 similar to UP|O81642 (O81642) IAA-Ala hydrolase (IAR3)
           (At1g51760/F19C24_4), partial (48%)
          Length = 685

 Score = 27.7 bits (60), Expect = 4.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 153 IKNLAENEKLLFIEEVTFYQHFYPGY 178
           + N+ E + L+  E+  FYQ  +PGY
Sbjct: 443 VNNVKEMQPLMGSEDFAFYQEVFPGY 520


>TC225937 similar to UP|O81642 (O81642) IAA-Ala hydrolase (IAR3)
            (At1g51760/F19C24_4), partial (89%)
          Length = 1569

 Score = 26.9 bits (58), Expect = 6.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 136  GEIHITHKTAHPFSNWNIKNLAENEKLLFIEEVTFYQHFYPGY 178
            G++H   K+    S   + N+ + + L+  E+  FYQ  +PGY
Sbjct: 1084 GDLHEYFKSVAG-SLLGVNNVKDMQPLMGSEDFAFYQEVFPGY 1209


>CO982357 
          Length = 738

 Score = 26.6 bits (57), Expect = 8.9
 Identities = 11/24 (45%), Positives = 16/24 (65%)
 Frame = +3

Query: 67  LGCTIMHEVDVHNMNQHHQLKHHN 90
           LGC   H+V++ + NQHHQ   H+
Sbjct: 552 LGCNSFHQVELLS-NQHHQSHKHS 620


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.324    0.141    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,108,284
Number of Sequences: 63676
Number of extensions: 168784
Number of successful extensions: 1299
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of query: 211
length of database: 12,639,632
effective HSP length: 93
effective length of query: 118
effective length of database: 6,717,764
effective search space: 792696152
effective search space used: 792696152
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.6 bits)