TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146568.9 + phase: 0 /pseudo
         (19 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC204345 homologue to UP|Q9XF99 (Q9XF99) Skp1 (Fragment), complete     32  0.081
TC204344 homologue to UP|Q9XF99 (Q9XF99) Skp1 (Fragment), complete     32  0.081
TC204343 homologue to UP|Q9XF99 (Q9XF99) Skp1 (Fragment), partia...    31  0.14
TC204342 homologue to UP|Q9XF99 (Q9XF99) Skp1 (Fragment), partia...    31  0.14

>TC204345 homologue to UP|Q9XF99 (Q9XF99) Skp1 (Fragment), complete
          Length = 842

 Score = 32.0 bits (71), Expect = 0.081
 Identities = 14/17 (82%), Positives = 16/17 (93%)
 Frame = +2

Query: 3   SSTRKITLKSSDGETFE 19
           +ST+KITLKSSDGE FE
Sbjct: 125 ASTKKITLKSSDGEAFE 175


>TC204344 homologue to UP|Q9XF99 (Q9XF99) Skp1 (Fragment), complete
          Length = 866

 Score = 32.0 bits (71), Expect = 0.081
 Identities = 14/17 (82%), Positives = 16/17 (93%)
 Frame = +2

Query: 3   SSTRKITLKSSDGETFE 19
           +ST+KITLKSSDGE FE
Sbjct: 101 ASTKKITLKSSDGEAFE 151


>TC204343 homologue to UP|Q9XF99 (Q9XF99) Skp1 (Fragment), partial (98%)
          Length = 1090

 Score = 31.2 bits (69), Expect = 0.14
 Identities = 14/17 (82%), Positives = 15/17 (87%)
 Frame = +2

Query: 3   SSTRKITLKSSDGETFE 19
           SS +KITLKSSDGE FE
Sbjct: 110 SSAKKITLKSSDGEAFE 160


>TC204342 homologue to UP|Q9XF99 (Q9XF99) Skp1 (Fragment), partial (98%)
          Length = 852

 Score = 31.2 bits (69), Expect = 0.14
 Identities = 14/17 (82%), Positives = 15/17 (87%)
 Frame = +3

Query: 3  SSTRKITLKSSDGETFE 19
          SS +KITLKSSDGE FE
Sbjct: 78 SSAKKITLKSSDGEAFE 128


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.298    0.112    0.266 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,492
Number of Sequences: 63676
Number of extensions: 1079
Number of successful extensions: 4
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 19
length of database: 12,639,632
effective HSP length: 0
effective length of query: 24
effective length of database: 12,639,632
effective search space: 303351168
effective search space used: 303351168
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 53 (25.0 bits)