TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146568.12 + phase: 0 /pseudo
         (1737 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NP395547 reverse transcriptase [Glycine max]                          102  1e-21
NP395548 reverse transcriptase [Glycine max]                           58  4e-08
BE660092 weakly similar to GP|9884624|dbj retroelement pol polyp...    48  3e-05
TC234722 similar to UP|Q6WAY9 (Q6WAY9) Pol (Fragment), partial (...    43  0.001
NP334778 reverse transcriptase [Glycine max]                           40  0.012
BE802896                                                               40  0.012
BE801213 weakly similar to GP|6691193|gb| F7F22.17 {Arabidopsis ...    38  0.044
BI321666                                                               33  1.4
TC208523 similar to UP|TOB1_MOUSE (Q61471) Tob1 protein (Transdu...    30  7.0

>NP395547 reverse transcriptase [Glycine max]
          Length = 762

 Score =  102 bits (254), Expect = 1e-21
 Identities = 92/235 (39%), Positives = 109/235 (46%)
 Frame = +2

Query: 881  IVHG*VLFMLYQKKVE*WWW*MKKMS*YPPVLSLVGECA*TTGG*TPQQEKITFHYHSWI 940
            I  G V F L+QKK  * W  M +MS*+    S  GEC    G     QEK   H+ SWI
Sbjct: 56   IAPGLVRFKLFQKKEG*QW*KMIEMS*FLQEESPDGECVLIIGSSMKPQEKTITHFPSWI 235

Query: 941  K*LKG*LAKPFTVSWMGIRGIIR*RWPQKIKRRLPLLVHSVCLLIGECPSGYVVHQQPFN 1000
            K L+     P TVSW   +  IR +W  +IK++  L V SV LLI  C S YV+    F 
Sbjct: 236  KCLRDLQGNPSTVSWTDTQVTIRLQWILRIKKKQLLHVLSVFLLIAACRSVYVMPLLLFR 415

Query: 1001 GACSPSSLT**RRTLRYLWTISLYLVSRLTNACFISMLSLKDVPKLTLF*TGKNVILW*L 1060
                   +T *R  L+ LW I   LV  L  A  I       V  L    TGKNV LW  
Sbjct: 416  DV*WQFLMTW*RNVLKSLWMIFRSLVHLLEIA*QI*RKCYNVVKNLIWCLTGKNVTLWYK 595

Query: 1061 KV*FWVIK*VLKA*RWIKLR*RL*KNFHHL*MLRG*GVFWGMPVSIGGL*RIFQK 1115
            KV     K + +  RW+K  * L  NFH   M +   VFW M   IG  *R   K
Sbjct: 596  KVLC*DTKSLKEELRWLKKN*MLLINFHPQLM*KAYTVFWVMLDFIGDS*RTSPK 760


>NP395548 reverse transcriptase [Glycine max]
          Length = 762

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 69/214 (32%), Positives = 84/214 (39%)
 Frame = +2

Query: 902  MKKMS*YPPVLSLVGECA*TTGG*TPQQEKITFHYHSWIK*LKG*LAKPFTVSWMGIRGI 961
            MK+M+*Y   LSLVG  A  T   T  Q K    Y SWI+  +         SWM    I
Sbjct: 119  MKRMT*YQHELSLVGNYASITASSTKPQGKTISLYPSWIRCWRDLQDTLIIASWMHTLDI 298

Query: 962  IR*RWPQKIKRRLPLLVHSVCLLIGECPSGYVVHQQPFNGACSPSSLT**RRTLRYLWTI 1021
            IR     +I+RR P     V L I     G  +H      AC P    * R+  +Y W  
Sbjct: 299  IRLL*TPRIRRRWPSHALLVSLPIDGFHLGCAMHLPHSKCACWPFLQI*WRKASKYSWMT 478

Query: 1022 SLYLVSRLTNACFISMLSLKDVPKLTLF*TGKNVILW*LKV*FWVIK*VLKA*RWIKLR* 1081
              YL               KD  K T +* G++V  W  K *   IK   +  R  K R 
Sbjct: 479  FQYLCPH*KVV*RSWRWYYKDAWKQT*Y*IGRSVTSWFEKA*S*AIKFRPEELR*TKQRL 658

Query: 1082 RL*KNFHHL*MLRG*GVFWGMPVSIGGL*RIFQK 1115
               K+ HH  ML+  G     P S     R  QK
Sbjct: 659  MSLKSCHHHQMLKASGAS*DKPGSTEDSSRTSQK 760


>BE660092 weakly similar to GP|9884624|dbj retroelement pol polyprotein-like
            {Arabidopsis thaliana}, partial (13%)
          Length = 378

 Score = 48.1 bits (113), Expect = 3e-05
 Identities = 44/114 (38%), Positives = 57/114 (49%)
 Frame = -1

Query: 1517 CLKSTTLNIKLQLPTTLKLVVK*RFPTVS*NKFWRKL*RLLGKIGLGS*TTLFGLIGLLL 1576
            CLKST         TT + + + +F T    +F R+L    GKIG+     L G IGL  
Sbjct: 366  CLKSTGWYTGYPHHTTPRPMDRQKFLTGKSREF*RRLCSQAGKIGVPGLMMLSGHIGLPT 187

Query: 1577 KRILGCHLINWSLAKRVIFQ*S*STKLIGPSKLLILIKL*LVRKDS*SSMS*KK 1630
            K    C LI  SL + VIFQ   STK  G  +L   + + LVRK S + +S* K
Sbjct: 186  KHP*ECLLIGLSLERHVIFQWKLSTKHTGQ*RLATSLWIKLVRKGSCN*VS*MK 25


>TC234722 similar to UP|Q6WAY9 (Q6WAY9) Pol (Fragment), partial (32%)
          Length = 482

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 30/74 (40%), Positives = 39/74 (52%)
 Frame = -1

Query: 1534 KLVVK*RFPTVS*NKFWRKL*RLLGKIGLGS*TTLFGLIGLLLKRILGCHLINWSLAKRV 1593
            K + K +F    *+++ R L     KIGL S   L GL GL  +    CH  NWS+ K  
Sbjct: 224  KQMAKQKFQIKR*SEYLRILLCHQEKIGL*SWMMLSGLTGLHSRLP*ACHHFNWSMVKHA 45

Query: 1594 IFQ*S*STKLIGPS 1607
             ++ S STK IGPS
Sbjct: 44   TYRWSWSTKPIGPS 3


>NP334778 reverse transcriptase [Glycine max]
          Length = 431

 Score = 39.7 bits (91), Expect = 0.012
 Identities = 27/70 (38%), Positives = 36/70 (50%)
 Frame = +1

Query: 950  PFTVSWMGIRGIIR*RWPQKIKRRLPLLVHSVCLLIGECPSGYVVHQQPFNGACSPSSLT 1009
            P+++SWM  R IIR*RW Q+I +R   L++     I  C  G  +  QP  G     S T
Sbjct: 103  PYSLSWMDFRVIIR*RWHQRIWKRQLSLLYGEPSAIR*CRLG*RILGQPTIGPWWHYSRT 282

Query: 1010 **RRTLRYLW 1019
            *  R  R +W
Sbjct: 283  *CTRRSRPMW 312


>BE802896 
          Length = 416

 Score = 39.7 bits (91), Expect = 0.012
 Identities = 44/125 (35%), Positives = 57/125 (45%)
 Frame = -3

Query: 1098 VFWGMPVSIGGL*RIFQK*PSPSITF*LKKLSLILMLHV*MLFL*LKTIW*LHQ*SLHPI 1157
            +F  M  S G L* I +K*P    T   ++ SL LM++   L +  K        S HP 
Sbjct: 414  LFLVMQDSTGAL*EILEK*PFHYPTCCKRR*SLTLMINANRLLIASKEH*LPPPSSRHPT 235

Query: 1158 GIYTLNLCVMQVIMLLVQS*ANTRTNFFMQFTMQARF*MKVK*TIQQLKKSCLQ*YLHWK 1217
            G   L+LCVM  IM    S      N    + +    *M  K  I  L+KS   *+L  K
Sbjct: 234  GQPLLSLCVMHQIMHWGLSLLRKLINCLG*YIILLGL*MLPKRIILLLRKSY*P*FLLLK 55

Query: 1218 NFVLI 1222
            NF+LI
Sbjct: 54   NFILI 40


>BE801213 weakly similar to GP|6691193|gb| F7F22.17 {Arabidopsis thaliana},
            partial (3%)
          Length = 416

 Score = 37.7 bits (86), Expect = 0.044
 Identities = 29/63 (46%), Positives = 36/63 (57%)
 Frame = +3

Query: 1551 RKL*RLLGKIGLGS*TTLFGLIGLLLKRILGCHLINWSLAKRVIFQ*S*STKLIGPSKLL 1610
            +K+  L  KIG  +*  LFG   LL K  L      WS+ + VI+ *S*STK IGP  + 
Sbjct: 225  KKMWHLQEKIGHPN*RMLFGHARLLKKLQLV*LHSKWSIGRLVIYP*S*STKHIGP*SV* 404

Query: 1611 ILI 1613
            ILI
Sbjct: 405  ILI 413


>BI321666 
          Length = 430

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 20/45 (44%), Positives = 25/45 (55%)
 Frame = +3

Query: 1402 FSRIAMIL*GGVTIAKEQVVFLRGMRCP*RESLKLNHLTVGALIL 1446
            FS++ M +   V  AKE  VF RGM C      +   LT+GALIL
Sbjct: 45   FSKMHMFMLSHVINAKELEVFPRGMNCHCIPFWRWRSLTIGALIL 179


>TC208523 similar to UP|TOB1_MOUSE (Q61471) Tob1 protein (Transducer of
           erbB-2 1), partial (5%)
          Length = 665

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 1/53 (1%)
 Frame = -3

Query: 475 PKRRRRRKDNSRNSC-NSSHNFR*IFLLVMLLIKCRCMLNS*KKC*RGEENQK 526
           PKR RRR+   R  C    H    + LL++L ++ R  L S K   R  + +K
Sbjct: 219 PKRHRRRRQLKRRRCLRRKHRLLLLLLLLLLRLRLRLRLKSQKSVWRLSQGRK 61


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.369    0.165    0.601 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,341,265
Number of Sequences: 63676
Number of extensions: 1071485
Number of successful extensions: 13089
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5139
Number of HSP's successfully gapped in prelim test: 400
Number of HSP's that attempted gapping in prelim test: 7640
Number of HSP's gapped (non-prelim): 6139
length of query: 1737
length of database: 12,639,632
effective HSP length: 111
effective length of query: 1626
effective length of database: 5,571,596
effective search space: 9059415096
effective search space used: 9059415096
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 66 (30.0 bits)