BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146567.9 + phase: 0
(80 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC215754 homologue to UP|Q9C6K5 (Q9C6K5) Sm-like protein, partia... 137 1e-33
TC215751 homologue to UP|Q9C6K5 (Q9C6K5) Sm-like protein, complete 136 2e-33
CD406340 similar to SP|Q9Y4Z1|LSM3_ U6 snRNA-associated Sm-like ... 105 4e-24
TC215753 similar to UP|LSM3_HUMAN (P62310) U6 snRNA-associated S... 78 9e-16
TC225639 homologue to UP|Q9FKB0 (Q9FKB0) Sm-like protein, partia... 40 2e-04
TC214281 homologue to UP|O22247 (O22247) Small nuclear ribonucle... 40 2e-04
TC214404 homologue to UP|O22247 (O22247) Small nuclear ribonucle... 40 2e-04
TC225637 homologue to UP|Q9FKB0 (Q9FKB0) Sm-like protein, partia... 40 3e-04
BM521790 homologue to PIR|T10586|T10 small nuclear ribonucleopro... 39 4e-04
TC231350 homologue to PIR|T10586|T10586 small nuclear ribonucleo... 38 8e-04
TC214099 homologue to UP|O22247 (O22247) Small nuclear ribonucle... 37 0.001
BG157513 36 0.004
TC214086 homologue to UP|O22247 (O22247) Small nuclear ribonucle... 35 0.005
AW132538 homologue to GP|9758886|dbj|B U6 snRNA-associated Sm-li... 35 0.009
TC218659 weakly similar to UP|Q9VJI7 (Q9VJI7) CG13277-PA (RH7352... 34 0.015
TC226510 similar to GB|BAC55689.1|27817924|AP003940 contains EST... 30 0.22
TC226509 similar to GB|BAC55689.1|27817924|AP003940 contains EST... 30 0.22
BU926889 weakly similar to GP|11120508|gb| cytokinin oxidase {Ar... 26 3.2
CF922370 26 4.2
CD418256 25 7.1
>TC215754 homologue to UP|Q9C6K5 (Q9C6K5) Sm-like protein, partial (96%)
Length = 752
Score = 137 bits (345), Expect = 1e-33
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = +1
Query: 1 MAGTEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTV 60
+ TEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTV
Sbjct: 100 LMATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTV 279
Query: 61 EIDDETYEEIVRVS 74
EIDDETYEEIVR +
Sbjct: 280 EIDDETYEEIVRTT 321
>TC215751 homologue to UP|Q9C6K5 (Q9C6K5) Sm-like protein, complete
Length = 733
Score = 136 bits (343), Expect = 2e-33
Identities = 68/71 (95%), Positives = 70/71 (97%)
Frame = +1
Query: 4 TEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEID 63
TEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEI+TTVEID
Sbjct: 85 TEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIITTVEID 264
Query: 64 DETYEEIVRVS 74
DETYEEIVR +
Sbjct: 265 DETYEEIVRTT 297
>CD406340 similar to SP|Q9Y4Z1|LSM3_ U6 snRNA-associated Sm-like protein LSm3
(MDS017). [Mouse] {Mus musculus}, partial (88%)
Length = 445
Score = 105 bits (262), Expect = 4e-24
Identities = 49/65 (75%), Positives = 59/65 (90%)
Frame = -3
Query: 10 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEE 69
V+EPLDLIRLSLDERIYVK+R RELRG LHAY QHLN++LGDVEEI+T VEID+ETYEE
Sbjct: 410 VEEPLDLIRLSLDERIYVKMRHGRELRGHLHAYYQHLNIVLGDVEEIITNVEIDEETYEE 231
Query: 70 IVRVS 74
+ +++
Sbjct: 230 VYKIT 216
>TC215753 similar to UP|LSM3_HUMAN (P62310) U6 snRNA-associated Sm-like
protein LSm3 (MDS017), partial (60%)
Length = 630
Score = 77.8 bits (190), Expect = 9e-16
Identities = 37/45 (82%), Positives = 41/45 (90%)
Frame = -2
Query: 30 RSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRVS 74
R++ RGKLHAYDQHLNMILGDVEE+VTTVEIDDETYEEIVR +
Sbjct: 296 RAEFGTRGKLHAYDQHLNMILGDVEEMVTTVEIDDETYEEIVRTT 162
>TC225639 homologue to UP|Q9FKB0 (Q9FKB0) Sm-like protein, partial (97%)
Length = 830
Score = 40.4 bits (93), Expect = 2e-04
Identities = 19/49 (38%), Positives = 30/49 (60%)
Frame = +1
Query: 13 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 61
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 349 PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAE 495
>TC214281 homologue to UP|O22247 (O22247) Small nuclear
ribonucleoprotein-like protein (At2g47640), complete
Length = 672
Score = 40.4 bits (93), Expect = 2e-04
Identities = 19/58 (32%), Positives = 38/58 (64%), Gaps = 2/58 (3%)
Frame = +3
Query: 5 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTV 60
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 156 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 329
>TC214404 homologue to UP|O22247 (O22247) Small nuclear
ribonucleoprotein-like protein (At2g47640), complete
Length = 782
Score = 40.4 bits (93), Expect = 2e-04
Identities = 19/58 (32%), Positives = 38/58 (64%), Gaps = 2/58 (3%)
Frame = +1
Query: 5 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTV 60
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 166 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 339
>TC225637 homologue to UP|Q9FKB0 (Q9FKB0) Sm-like protein, partial (97%)
Length = 591
Score = 39.7 bits (91), Expect = 3e-04
Identities = 19/49 (38%), Positives = 29/49 (58%)
Frame = +3
Query: 13 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 61
P +LI + +I+V ++ D+EL G L +D + NM+L DV E T E
Sbjct: 168 PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYANMVLEDVTEYEITAE 314
>BM521790 homologue to PIR|T10586|T10 small nuclear
ribonucleoprotein-associated protein homolog F9F13.90 -
Arabidopsis thaliana, partial (46%)
Length = 428
Score = 39.3 bits (90), Expect = 4e-04
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 10/60 (16%)
Frame = +3
Query: 6 EESAVKEPLDLIRLSLDE----------RIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 55
E +A +E D ++S+ + R+ V ++ R+L GK A+D+H+N++LGD EE
Sbjct: 15 EAAAAEENPDFSKMSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 194
>TC231350 homologue to PIR|T10586|T10586 small nuclear
ribonucleoprotein-associated protein homolog F9F13.90 -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(60%)
Length = 662
Score = 38.1 bits (87), Expect = 8e-04
Identities = 15/35 (42%), Positives = 26/35 (73%)
Frame = +2
Query: 21 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 55
++ R+ V ++ R+L GK A+D+H+N++LGD EE
Sbjct: 134 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 238
>TC214099 homologue to UP|O22247 (O22247) Small nuclear
ribonucleoprotein-like protein (At2g47640), complete
Length = 574
Score = 37.4 bits (85), Expect = 0.001
Identities = 17/55 (30%), Positives = 36/55 (64%), Gaps = 2/55 (3%)
Frame = +1
Query: 5 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIV 57
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V + V
Sbjct: 121 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRDDV 285
>BG157513
Length = 334
Score = 35.8 bits (81), Expect = 0.004
Identities = 15/54 (27%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Frame = -1
Query: 5 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEI 56
++E + PL ++ +S+ + ++ + R + +L G++ A+D+H NM+L +V E+
Sbjct: 295 QQEKFITGPLSVLMMSVANNTQVLIHCRYNTKLLGRVRAFDRHCNMVLENVREM 134
>TC214086 homologue to UP|O22247 (O22247) Small nuclear
ribonucleoprotein-like protein (At2g47640), partial
(79%)
Length = 1189
Score = 35.4 bits (80), Expect = 0.005
Identities = 14/53 (26%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Frame = +2
Query: 10 VKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTV 60
++ + ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 635 IRHEVSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 793
>AW132538 homologue to GP|9758886|dbj|B U6 snRNA-associated Sm-like
protein-like {Arabidopsis thaliana}, partial (57%)
Length = 429
Score = 34.7 bits (78), Expect = 0.009
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +2
Query: 15 DLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDV 53
+LI + +I+V ++ D+EL G L +D ++NM+L DV
Sbjct: 308 ELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDV 424
>TC218659 weakly similar to UP|Q9VJI7 (Q9VJI7) CG13277-PA (RH73529p), partial
(81%)
Length = 578
Score = 33.9 bits (76), Expect = 0.015
Identities = 17/44 (38%), Positives = 27/44 (60%)
Frame = +3
Query: 14 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIV 57
LDL + +D+ + VKL R++ G L YDQ LN++L + E +
Sbjct: 138 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFL 266
>TC226510 similar to GB|BAC55689.1|27817924|AP003940 contains ESTs
AU077521(C52420),AU077522(C52420) snRNP core Sm protein
Sm-X5-like protein {Oryza sativa (japonica
cultivar-group);} , complete
Length = 562
Score = 30.0 bits (66), Expect = 0.22
Identities = 14/49 (28%), Positives = 29/49 (58%)
Frame = +1
Query: 25 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRV 73
+ V+L++D ++G LH+ DQ+LN+ ++ T ++ E Y ++ V
Sbjct: 127 VIVELKNDLAIKGTLHSVDQYLNI------KLENTSVVNQEKYPHMLSV 255
>TC226509 similar to GB|BAC55689.1|27817924|AP003940 contains ESTs
AU077521(C52420),AU077522(C52420) snRNP core Sm protein
Sm-X5-like protein {Oryza sativa (japonica
cultivar-group);} , complete
Length = 660
Score = 30.0 bits (66), Expect = 0.22
Identities = 14/49 (28%), Positives = 29/49 (58%)
Frame = +2
Query: 25 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRV 73
+ V+L++D ++G LH+ DQ+LN+ ++ T ++ E Y ++ V
Sbjct: 149 VIVELKNDLAIKGTLHSVDQYLNI------KLENTSVVNQEKYPHMLSV 277
>BU926889 weakly similar to GP|11120508|gb| cytokinin oxidase {Arabidopsis
thaliana}, partial (7%)
Length = 447
Score = 26.2 bits (56), Expect = 3.2
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 9 AVKEPLDLIRLSLDERIYVKLRSDRE-LRGK 38
A+ P +L +SLD+ I+ KLR D E L+G+
Sbjct: 181 ALSLPPELASVSLDDTIFCKLRDDPEALQGR 273
>CF922370
Length = 492
Score = 25.8 bits (55), Expect = 4.2
Identities = 11/24 (45%), Positives = 14/24 (57%)
Frame = -3
Query: 23 ERIYVKLRSDRELRGKLHAYDQHL 46
ER VKL D+ + K H Y +HL
Sbjct: 208 ERCLVKLNMDKAMELKRHLYSRHL 137
>CD418256
Length = 529
Score = 25.0 bits (53), Expect = 7.1
Identities = 11/30 (36%), Positives = 16/30 (52%)
Frame = +3
Query: 13 PLDLIRLSLDERIYVKLRSDRELRGKLHAY 42
P +L ++IYVK RS+ R K H +
Sbjct: 9 PTELFH*KQTQKIYVKPRSNHNFREKFHNF 98
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.313 0.134 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,675,744
Number of Sequences: 63676
Number of extensions: 23870
Number of successful extensions: 72
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of query: 80
length of database: 12,639,632
effective HSP length: 56
effective length of query: 24
effective length of database: 9,073,776
effective search space: 217770624
effective search space used: 217770624
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)
Medicago: description of AC146567.9