BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146567.15 + phase: 0 /pseudo
(225 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC232778 similar to UP|Q9LNG5 (Q9LNG5) F21D18.16, partial (5%) 74 7e-14
BQ576456 57 7e-09
BI470376 weakly similar to GP|14090338|dbj P0638D12.5 {Oryza sat... 52 2e-07
TC211858 38 0.004
TC211545 weakly similar to UP|Q7XHQ1 (Q7XHQ1) Calcineurin-like p... 34 0.061
TC234385 similar to UP|Q9FJ21 (Q9FJ21) Pectin methylesterase (AT... 30 0.88
BE475635 29 2.0
CO983545 29 2.0
TC208045 28 2.6
TC219387 similar to UP|Q7PKG0 (Q7PKG0) ENSANGP00000024462 (Fragm... 27 5.7
TC212761 UP|Q9G8Q8 (Q9G8Q8) Ribosomal protein S10, partial (5%) 27 7.5
TC207346 homologue to GB|AAO39923.1|28372882|BT003695 At3g55320 ... 27 7.5
TC220796 27 7.5
TC204642 similar to UP|ADK2_ARATH (Q9LZG0) Adenosine kinase 2 (... 27 9.8
TC208278 similar to UP|Q9VYT9 (Q9VYT9) CG15741-PA, partial (21%) 27 9.8
TC206390 similar to UP|Q8S902 (Q8S902) Syringolide-induced prote... 27 9.8
TC211608 27 9.8
>TC232778 similar to UP|Q9LNG5 (Q9LNG5) F21D18.16, partial (5%)
Length = 746
Score = 73.6 bits (179), Expect = 7e-14
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 6/187 (3%)
Frame = -1
Query: 3 GLTTLLTSGYENISHGFVCAMTGRWHEETNNFHLPIGEMTIRLDDVVCLLGI-----PIT 57
G ++ GY I+ + A RW ET+ FHL GE TI L DV+ LLG+ P+
Sbjct: 530 GFYWIMKMGYLKINAALISAFIERWRPETHTFHLRCGEATITLQDVLILLGLRTDGAPLI 351
Query: 58 GRLLPDKELTCEEGLKIMETDLLFTAEAAGKELTR*GASHISFGALKTRYKELEKEEQAQ 117
G D CEE L + + E G S + L + + +E
Sbjct: 350 GSTNLDWADLCEELLGVRPQE----GEIEG--------SVVKLSWLAHYFSHINIDEGNV 207
Query: 118 VRL-ACIKALLLLLLG*TIFLGKNNKNMNLIWLLALQDMDELDSWSWGGMRLAFLYEPLS 176
+L I+A +L +G IF+ K++ ++L +L L+D + +++WG LA+LY +
Sbjct: 206 EQLQRFIRAWILRFIGGVIFVNKSSSRVSLRYLQFLRDFE*CSTYAWGPAMLAYLYREMC 27
Query: 177 LTSDSSV 183
T+D V
Sbjct: 26 STTDYKV 6
>BQ576456
Length = 424
Score = 57.0 bits (136), Expect = 7e-09
Identities = 37/134 (27%), Positives = 68/134 (50%)
Frame = +1
Query: 39 GEMTIRLDDVVCLLGIPITGRLLPDKELTCEEGLKIMETDLLFTAEAAGKELTR*GASHI 98
GE+TI LDD+ CLL +PITG L + L +E + ++ L + E A ++ R +++
Sbjct: 31 GELTITLDDMACLLHLPITGALHRFEPLGVDEAVLLLMELLEVSREEARAKIVRAHRAYV 210
Query: 99 SFGALKTRYKELEKEEQAQVRLACIKALLLLLLG*TIFLGKNNKNMNLIWLLALQDMDEL 158
L+ Y + QA+ + ++A L L+ T+F K+ +++++ L D+
Sbjct: 211 RLSWLREVY---QSRCQARCWIVAVRAYLFHLVDCTLFANKSATHVHVVHLKGF*DLC*S 381
Query: 159 DSWSWGGMRLAFLY 172
+ WG L +Y
Sbjct: 382 GGYGWGVAALVHMY 423
>BI470376 weakly similar to GP|14090338|dbj P0638D12.5 {Oryza sativa
(japonica cultivar-group)}, partial (5%)
Length = 429
Score = 52.0 bits (123), Expect = 2e-07
Identities = 27/61 (44%), Positives = 34/61 (55%)
Frame = -1
Query: 1 MSGLTTLLTSGYENISHGFVCAMTGRWHEETNNFHLPIGEMTIRLDDVVCLLGIPITGRL 60
+SGL ++ ++ V A RW ET+ FHL GE TI L DV LLGIP+ GR
Sbjct: 387 ISGLYPIMKLAQLKVNGALVNAFIERWRPETHTFHLKYGEATITLQDVSVLLGIPVDGRP 208
Query: 61 L 61
L
Sbjct: 207 L 205
>TC211858
Length = 524
Score = 37.7 bits (86), Expect = 0.004
Identities = 18/57 (31%), Positives = 32/57 (55%)
Frame = -1
Query: 144 MNLIWLLALQDMDELDSWSWGGMRLAFLYEPLSLTSDSSVASRGGYMTLFVVIFVFL 200
+++++L A +D+ + ++WG L +Y L S ++ GY+TL V FVFL
Sbjct: 470 VHVVYLDAFRDLGQSGGYAWGVAALVHMYNQLDEASRTTTRQIVGYLTLLQVNFVFL 300
>TC211545 weakly similar to UP|Q7XHQ1 (Q7XHQ1) Calcineurin-like
phosphoesterase-like, partial (11%)
Length = 1127
Score = 33.9 bits (76), Expect = 0.061
Identities = 17/48 (35%), Positives = 25/48 (51%)
Frame = +3
Query: 11 GYENISHGFVCAMTGRWHEETNNFHLPIGEMTIRLDDVVCLLGIPITG 58
GY I+ + + R +T+ FH+ E TI L DV LLG+ + G
Sbjct: 12 GYLKINASLITVLIER*RPKTHTFHMRCRECTITLQDVSVLLGMRVDG 155
>TC234385 similar to UP|Q9FJ21 (Q9FJ21) Pectin methylesterase
(AT5g49180/K21P3_5), partial (6%)
Length = 677
Score = 30.0 bits (66), Expect = 0.88
Identities = 17/58 (29%), Positives = 28/58 (47%), Gaps = 2/58 (3%)
Frame = -2
Query: 161 WSWGGMRLAFLYEPLSLTSDSSVASRGGYMTLFVV--IFVFLLFYLLDRKCLYCFPAC 216
WSW + L +P S S S + ++ L ++ + V LFYL+ +C+ P C
Sbjct: 181 WSWSNSSMDELGKPCSQISQSRTQGQTQWIPLGLLFPMVVVSLFYLVQSQCIVGSPWC 8
>BE475635
Length = 412
Score = 28.9 bits (63), Expect = 2.0
Identities = 17/61 (27%), Positives = 33/61 (53%)
Frame = +3
Query: 130 LLG*TIFLGKNNKNMNLIWLLALQDMDELDSWSWGGMRLAFLYEPLSLTSDSSVASRGGY 189
LLG T+F K+ ++ +I+L A +D+ + S++ + L +Y+ L+ S GY
Sbjct: 3 LLGCTLFANKSATHVYVIFLDAFRDLSQSGSYA*VVVALVHMYDHLNDACKSDDRKLAGY 182
Query: 190 M 190
+
Sbjct: 183 I 185
>CO983545
Length = 565
Score = 28.9 bits (63), Expect = 2.0
Identities = 16/31 (51%), Positives = 18/31 (57%), Gaps = 3/31 (9%)
Frame = -1
Query: 189 YMTLFV---VIFVFLLFYLLDRKCLYCFPAC 216
YM+ V +IFV LFYLL R L CF C
Sbjct: 127 YMSSLVSSRLIFVLSLFYLLSRLYLSCFNLC 35
>TC208045
Length = 427
Score = 28.5 bits (62), Expect = 2.6
Identities = 12/42 (28%), Positives = 25/42 (58%), Gaps = 2/42 (4%)
Frame = -3
Query: 160 SWSWGGMRLAFLYEPLSLT--SDSSVASRGGYMTLFVVIFVF 199
SW+W G+RL L+ +++T + S + R + +F+ + +F
Sbjct: 155 SWNWDGIRLGMLWTCIAMT*PTHSPLPEREEQVIIFLTLILF 30
>TC219387 similar to UP|Q7PKG0 (Q7PKG0) ENSANGP00000024462 (Fragment),
partial (68%)
Length = 530
Score = 27.3 bits (59), Expect = 5.7
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 190 MTLFVVIFVFLLFYLLDRKCLYC-FPACESKETSK 223
+T FV +FVFLLF+ +C C + C KE+S+
Sbjct: 343 ITRFVEMFVFLLFFF---QCCNC*YVLCVGKESSQ 438
>TC212761 UP|Q9G8Q8 (Q9G8Q8) Ribosomal protein S10, partial (5%)
Length = 998
Score = 26.9 bits (58), Expect = 7.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 195 VIFVFLLFYLLDRKCLYCF 213
+IF+F+ FY+L K L C+
Sbjct: 245 LIFIFIFFYILGHKMLRCY 189
>TC207346 homologue to GB|AAO39923.1|28372882|BT003695 At3g55320 {Arabidopsis
thaliana;} , partial (80%)
Length = 1120
Score = 26.9 bits (58), Expect = 7.5
Identities = 25/91 (27%), Positives = 41/91 (44%), Gaps = 9/91 (9%)
Frame = +1
Query: 137 LGKNNKNMNL-IWLLALQDMDELDSWSWGG--MRLAFLYEPLSLTSDSSVASRGGYMTLF 193
+G ++N+ IWL+ ++ +D++S+GG RL L+ L + + LF
Sbjct: 625 VGIKDRNLEFGIWLV*DSSIEAVDAYSFGGKQFRLTVLFPRYILIEEGGGINTISAELLF 804
Query: 194 VVIFVFLLFYLLDR------KCLYCFPACES 218
F F LF L R C+Y CE+
Sbjct: 805 YKTF-FSLFLSLKRG*RLVHYCIYFLFICEN 894
>TC220796
Length = 438
Score = 26.9 bits (58), Expect = 7.5
Identities = 14/32 (43%), Positives = 16/32 (49%)
Frame = -3
Query: 37 PIGEMTIRLDDVVCLLGIPITGRLLPDKELTC 68
PIG + DD VC L P+ LL D L C
Sbjct: 196 PIGGPHSKFDDFVCFLFFPLCFVLLRDGYLLC 101
>TC204642 similar to UP|ADK2_ARATH (Q9LZG0) Adenosine kinase 2 (AK 2)
(Adenosine 5'-phosphotransferase 2) , partial (52%)
Length = 873
Score = 26.6 bits (57), Expect = 9.8
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Frame = -3
Query: 7 LLTSGYENISHGFVCAMTGRWHEETNNFHLPIGEMTIR----LDDVVCLL 52
LL Y N + GF+ T W + + I + +R LDD +C +
Sbjct: 649 LLYCNYRNTTKGFLTIKTS*WEQNREKHSMKIRLLWVRTARPLDDNICCI 500
>TC208278 similar to UP|Q9VYT9 (Q9VYT9) CG15741-PA, partial (21%)
Length = 1428
Score = 26.6 bits (57), Expect = 9.8
Identities = 10/19 (52%), Positives = 13/19 (67%)
Frame = -3
Query: 207 RKCLYCFPACESKETSKGL 225
R+C YCFP SK T++ L
Sbjct: 1303 RRCKYCFPCPISKSTTQNL 1247
>TC206390 similar to UP|Q8S902 (Q8S902) Syringolide-induced protein 19-1-5,
partial (92%)
Length = 1246
Score = 26.6 bits (57), Expect = 9.8
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 167 RLAFLYEPLSLTSDSSVASRGGYMT-LFVVIFVFLLFYLLDRKCLYC 212
R+ L EP+ LTS ++ + ++IFVFL F+L D L C
Sbjct: 1006 RMQTLLEPIGLTSRTTHNKCCNIIL*TILLIFVFLFFFLFDA*VL*C 1146
>TC211608
Length = 782
Score = 26.6 bits (57), Expect = 9.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 121 ACIKALLLLLLG*TIFLGKNN 141
AC KAL + LG* +F+ KNN
Sbjct: 82 ACSKALSKISLG*RLFMSKNN 20
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.328 0.143 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,138,664
Number of Sequences: 63676
Number of extensions: 166190
Number of successful extensions: 1134
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of query: 225
length of database: 12,639,632
effective HSP length: 94
effective length of query: 131
effective length of database: 6,654,088
effective search space: 871685528
effective search space used: 871685528
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC146567.15