BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146566.1 + phase: 0
(155 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC210627 similar to UP|Q76KB3 (Q76KB3) Makorin ring-zinc-finger ... 154 1e-38
TC220403 similar to UP|Q7X7W8 (Q7X7W8) Makorin ring-zinc-finger ... 91 2e-19
TC210126 similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C2... 35 0.019
TC207235 similar to UP|RM21_ARATH (Q8L9A0) 50S ribosomal protein... 34 0.025
TC203635 similar to PIR|T46225|T46225 alpha NAC-like protein - A... 34 0.032
TC219641 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 34 0.032
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A... 32 0.094
TC218919 homologue to UP|Q39892 (Q39892) Nucleosome assembly pro... 32 0.16
AI495341 32 0.16
TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 31 0.21
TC207234 weakly similar to UP|Q9FH01 (Q9FH01) Similarity to CHP-... 31 0.21
TC211437 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%) 31 0.21
TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Pro... 31 0.21
TC230070 weakly similar to GB|AAB68216.1|1244771|SCU43703 Ypl146... 31 0.27
AW760336 similar to GP|3176108|dbj| Brain-2 gene {Anolis carolin... 31 0.27
BU761594 similar to GP|22654971|gb At1g80930/F23A5_23 {Arabidops... 31 0.27
TC231897 similar to UP|Q6FPY6 (Q6FPY6) Strain CBS138 chromosome ... 30 0.36
TC227389 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacety... 30 0.36
TC215289 weakly similar to UP|Q9SJB0 (Q9SJB0) Expressed protein,... 30 0.47
AW349946 29 1.0
>TC210627 similar to UP|Q76KB3 (Q76KB3) Makorin ring-zinc-finger protein
(Fragment), partial (22%)
Length = 776
Score = 154 bits (390), Expect = 1e-38
Identities = 80/157 (50%), Positives = 108/157 (67%), Gaps = 2/157 (1%)
Frame = +1
Query: 1 MHDMLDVLGEVDLSSGEFYSIMRDSDFFEGMDPFEMMALSDSLAGGSGPCLGPFDSDDDD 60
+HDML++L +VDL+S E++SIMRDSD ++ MDPFEMM +SD LAG SGPCLGPFDSD
Sbjct: 163 VHDMLNMLQDVDLTSAEYFSIMRDSDLYDDMDPFEMM-VSDRLAGDSGPCLGPFDSD--- 330
Query: 61 DDGFRVSRMAAMQEAMAIGMDAFGPDDDEEEFNVFRMAAMQEAMVSGIDDFGPDDFPGID 120
EE+ ++F+MAA+ E + SG+DDFGP+DF D
Sbjct: 331 ----------------------------EEDLDIFQMAALSEVLASGVDDFGPEDFGDED 426
Query: 121 --PMDAALISMMMHSHMDDEEDDEDYEDEEEYTDDEY 155
PM+AAL+SMMMHS+M+DE+DD+D +EEEY+D++Y
Sbjct: 427 FNPMEAALLSMMMHSNMEDEDDDDD--EEEEYSDEDY 531
>TC220403 similar to UP|Q7X7W8 (Q7X7W8) Makorin ring-zinc-finger protein
(Makorin RING finger protein), partial (62%)
Length = 1109
Score = 91.3 bits (225), Expect = 2e-19
Identities = 42/62 (67%), Positives = 54/62 (86%)
Frame = +2
Query: 1 MHDMLDVLGEVDLSSGEFYSIMRDSDFFEGMDPFEMMALSDSLAGGSGPCLGPFDSDDDD 60
+HDML++L +VDL+S E++SIMRDSD ++ MDPFEMM +SD LAG SGPCLGPFDSD++D
Sbjct: 926 VHDMLNMLQDVDLTSAEYFSIMRDSDLYDDMDPFEMM-VSDRLAGDSGPCLGPFDSDEED 1102
Query: 61 DD 62
D
Sbjct: 1103LD 1108
>TC210126 similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23), partial
(7%)
Length = 735
Score = 34.7 bits (78), Expect = 0.019
Identities = 29/100 (29%), Positives = 38/100 (38%)
Frame = +3
Query: 55 DSDDDDDDGFRVSRMAAMQEAMAIGMDAFGPDDDEEEFNVFRMAAMQEAMVSGIDDFGPD 114
D D+DD+DG +E D G +D+ E N G DD D
Sbjct: 354 DGDEDDEDGHDQDDDGEDEEFSGEEGDEEGDPEDDPEANG-----------GGSDDDDDD 500
Query: 115 DFPGIDPMDAALISMMMHSHMDDEEDDEDYEDEEEYTDDE 154
+ D+EEDD+D EDEEE D+E
Sbjct: 501 N--------------------DNEEDDDDGEDEEEEEDEE 560
>TC207235 similar to UP|RM21_ARATH (Q8L9A0) 50S ribosomal protein L21,
mitochondrial precursor, partial (42%)
Length = 1204
Score = 34.3 bits (77), Expect = 0.025
Identities = 13/22 (59%), Positives = 19/22 (86%), Gaps = 1/22 (4%)
Frame = +1
Query: 134 HMDDEED-DEDYEDEEEYTDDE 154
H D+E+D DEDY++EE+Y DD+
Sbjct: 238 HSDEEDDSDEDYDEEEDYVDDD 303
>TC203635 similar to PIR|T46225|T46225 alpha NAC-like protein - Arabidopsis
thaliana {Arabidopsis thaliana;} , partial (71%)
Length = 1007
Score = 33.9 bits (76), Expect = 0.032
Identities = 15/52 (28%), Positives = 26/52 (49%)
Frame = +1
Query: 102 EAMVSGIDDFGPDDFPGIDPMDAALISMMMHSHMDDEEDDEDYEDEEEYTDD 153
E + +DD P DA L+ + DD+++D+D +DE++ DD
Sbjct: 100 EQQLPSVDDATQKKIPQPQEDDAPLVEDLKDDDKDDDDEDDDDDDEDDKEDD 255
>TC219641 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 942
Score = 33.9 bits (76), Expect = 0.032
Identities = 27/100 (27%), Positives = 40/100 (40%)
Frame = +1
Query: 55 DSDDDDDDGFRVSRMAAMQEAMAIGMDAFGPDDDEEEFNVFRMAAMQEAMVSGIDDFGPD 114
D ++DDDD ++ G + P+DD E G D G D
Sbjct: 400 DEEEDDDDADDQDDEEGDEDFSGEGEEEADPEDDPEANGA-----------GGSDSDGDD 546
Query: 115 DFPGIDPMDAALISMMMHSHMDDEEDDEDYEDEEEYTDDE 154
D G D D + DD ED+E+ EDE+E +++
Sbjct: 547 DDDGGDDDDD-------DNGDDDGEDEEEGEDEDEEDEED 645
>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;} , partial (46%)
Length = 902
Score = 32.3 bits (72), Expect = 0.094
Identities = 29/100 (29%), Positives = 41/100 (41%)
Frame = +2
Query: 55 DSDDDDDDGFRVSRMAAMQEAMAIGMDAFGPDDDEEEFNVFRMAAMQEAMVSGIDDFGPD 114
+ DDDDD+G ++ G D +DDEEE +V R + DD D
Sbjct: 350 EEDDDDDEG---DDNDDEEDDAPDGGDDDDDEDDEEEGDVQRGGEPDD------DDNDSD 502
Query: 115 DFPGIDPMDAALISMMMHSHMDDEEDDEDYEDEEEYTDDE 154
D D+++DED EDEEE ++E
Sbjct: 503 DD-------------------SDDDEDEDEEDEEEQGEEE 565
Score = 26.6 bits (57), Expect = 5.2
Identities = 10/16 (62%), Positives = 12/16 (74%)
Frame = +2
Query: 138 EEDDEDYEDEEEYTDD 153
EEDDE+YE +E DD
Sbjct: 281 EEDDEEYESVDEVVDD 328
Score = 25.8 bits (55), Expect = 8.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 135 MDDEEDDEDYEDEEEYTDDE 154
+DD EDDED E++++ DDE
Sbjct: 320 VDDAEDDEDEEEDDD--DDE 373
>TC218919 homologue to UP|Q39892 (Q39892) Nucleosome assembly protein 1,
partial (33%)
Length = 729
Score = 31.6 bits (70), Expect = 0.16
Identities = 11/19 (57%), Positives = 17/19 (88%)
Frame = +1
Query: 136 DDEEDDEDYEDEEEYTDDE 154
+DEE+DED +++EEY +DE
Sbjct: 199 EDEEEDEDEDEDEEYDEDE 255
Score = 26.9 bits (58), Expect = 3.9
Identities = 13/21 (61%), Positives = 16/21 (75%), Gaps = 1/21 (4%)
Frame = +1
Query: 136 DDEEDDEDY-EDEEEYTDDEY 155
+D EDDED EDE+E D+EY
Sbjct: 181 EDLEDDEDEEEDEDEDEDEEY 243
>AI495341
Length = 408
Score = 31.6 bits (70), Expect = 0.16
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 119 IDPMDAALISMMM-HSHMDDEEDDEDYEDEEEYTDD 153
+ PM++ L + +DD++DDE EDEE+Y D+
Sbjct: 39 LTPMESDLNDAVFPEEDLDDDDDDETPEDEEDYDDE 146
>TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 850
Score = 31.2 bits (69), Expect = 0.21
Identities = 32/104 (30%), Positives = 40/104 (37%), Gaps = 6/104 (5%)
Frame = +3
Query: 57 DDDDDDGFRVSRMAAMQEAMAIGMDAFGPDDDEEEFNVFRMAAMQEAMVSGIDD------ 110
DDDDDD D +DDEE+ + +EA DD
Sbjct: 288 DDDDDDNVN---------------DGEDDNDDEEDEDFSGDDGGEEA--DSDDDPEANGG 416
Query: 111 FGPDDFPGIDPMDAALISMMMHSHMDDEEDDEDYEDEEEYTDDE 154
G DD G D D D++EDD D +DE+E DDE
Sbjct: 417 GGSDDDDGDDDEDD-----------DNDEDDGDEDDEDEGDDDE 515
>TC207234 weakly similar to UP|Q9FH01 (Q9FH01) Similarity to CHP-rich zinc
finger protein, partial (4%)
Length = 449
Score = 31.2 bits (69), Expect = 0.21
Identities = 14/23 (60%), Positives = 19/23 (81%), Gaps = 2/23 (8%)
Frame = +1
Query: 134 HMDDEED-DEDYEDEEE-YTDDE 154
H D+++D DEDY+DEEE Y DD+
Sbjct: 199 HSDEDDDGDEDYDDEEEDYVDDD 267
>TC211437 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%)
Length = 857
Score = 31.2 bits (69), Expect = 0.21
Identities = 30/100 (30%), Positives = 39/100 (39%)
Frame = +1
Query: 55 DSDDDDDDGFRVSRMAAMQEAMAIGMDAFGPDDDEEEFNVFRMAAMQEAMVSGIDDFGPD 114
D D+DD+DG +E D G +DE A G DD G +
Sbjct: 382 DGDEDDEDGPDEDEDGDDEEFSGEEGDEGGDPEDE-------------ANGEGSDD-GDE 519
Query: 115 DFPGIDPMDAALISMMMHSHMDDEEDDEDYEDEEEYTDDE 154
D G D DEEDD+D EDEEE +++
Sbjct: 520 DDDGDDN--------------GDEEDDDDGEDEEEDEEED 597
>TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23),
partial (8%)
Length = 581
Score = 31.2 bits (69), Expect = 0.21
Identities = 30/101 (29%), Positives = 43/101 (41%), Gaps = 1/101 (0%)
Frame = +2
Query: 55 DSDDDDDDGFRVSRMAAMQEAMAIGMDAFGPDDDEEEFNVFRMAAMQEAMVSGIDDFGPD 114
D++DDDDD + + G D D+D+E+F SG DD G +
Sbjct: 275 DTEDDDDD-----------DDVNDGEDGDDDDEDDEDF-------------SG-DDGGEE 379
Query: 115 DFPGIDP-MDAALISMMMHSHMDDEEDDEDYEDEEEYTDDE 154
DP + S DD++DD D +D +E DDE
Sbjct: 380 ADSDDDPEANGGGESDDDDEDDDDDDDDNDEDDGDEDDDDE 502
>TC230070 weakly similar to GB|AAB68216.1|1244771|SCU43703 Ypl146cp
{Saccharomyces cerevisiae;} , partial (5%)
Length = 1276
Score = 30.8 bits (68), Expect = 0.27
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 109 DDFGPDDFPGIDPMDAALISMMMHSHMDDEEDDEDYEDEEE 149
D+F D IDPM A L + ++EE++E+ E+EEE
Sbjct: 50 DEFDSDT--DIDPMHAGLSQWISTDEDNEEEEEEEEEEEEE 166
>AW760336 similar to GP|3176108|dbj| Brain-2 gene {Anolis carolinensis},
partial (4%)
Length = 424
Score = 30.8 bits (68), Expect = 0.27
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 131 MHSHMDDEEDDEDYEDEEEYTDD 153
+H DD +DDED +DEEE +D
Sbjct: 332 VHDEYDDIDDDEDEDDEEEEEED 400
>BU761594 similar to GP|22654971|gb At1g80930/F23A5_23 {Arabidopsis
thaliana}, partial (13%)
Length = 397
Score = 30.8 bits (68), Expect = 0.27
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +1
Query: 78 IGMDAFGPDDDEEEFNVFRMAAMQEAMVSGIDDFGPDDFPGIDPMDAALISMMMHSHMDD 137
I +D F PD + E N R ++++M+ + DD G+D S DD
Sbjct: 103 ISLDIFKPDPNFLE-NEKRYEELKKSMLG---EESEDDEEGLDS----------ESDDDD 240
Query: 138 EEDDEDYEDEEE 149
+EDDE E+EEE
Sbjct: 241 DEDDESDEEEEE 276
>TC231897 similar to UP|Q6FPY6 (Q6FPY6) Strain CBS138 chromosome I complete
sequence, partial (5%)
Length = 675
Score = 30.4 bits (67), Expect = 0.36
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Frame = +1
Query: 69 MAAMQEAMAIGMDAFGPDDDEEEFNVFRMAAMQEAMVSGIDDFGPDDFP-------GIDP 121
++ ++E A G D E + R++ MQ + V+ + P D G +P
Sbjct: 61 ISPLEERQAQGETILNDDGQRE---IQRISTMQISGVASVPGNNPIDSNVPTEKDHGQEP 231
Query: 122 MDA------ALISMMMHSHMDDEEDDEDYEDEEEYTDDEY 155
DA A+ + +D EEDDED +DE DD+Y
Sbjct: 232 QDAMQDNGQAISQHHRSNWVDAEEDDEDEQDE----DDQY 339
>TC227389 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (63%)
Length = 1144
Score = 30.4 bits (67), Expect = 0.36
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 55 DSDDDDDDGFRVSRMAAMQEAMAIGMDAFGPDDDEEE 91
DSDDD DD S M++A + D G +DD+EE
Sbjct: 552 DSDDDSDDDDFGSSDEEMEDADSDSDDESGDEDDDEE 662
>TC215289 weakly similar to UP|Q9SJB0 (Q9SJB0) Expressed protein, partial
(32%)
Length = 1476
Score = 30.0 bits (66), Expect = 0.47
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 137 DEEDDEDYEDEEEYTDDE 154
DE+ D DYE+EEE DDE
Sbjct: 960 DEDQDYDYEEEEEEEDDE 1013
>AW349946
Length = 567
Score = 28.9 bits (63), Expect = 1.0
Identities = 10/19 (52%), Positives = 16/19 (83%)
Frame = -1
Query: 136 DDEEDDEDYEDEEEYTDDE 154
DD+E++ D E+EEE+ DD+
Sbjct: 456 DDKEEENDDEEEEEFEDDD 400
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.138 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,688,875
Number of Sequences: 63676
Number of extensions: 52816
Number of successful extensions: 1660
Number of sequences better than 10.0: 120
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of query: 155
length of database: 12,639,632
effective HSP length: 89
effective length of query: 66
effective length of database: 6,972,468
effective search space: 460182888
effective search space used: 460182888
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Medicago: description of AC146566.1