BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146564.8 - phase: 0 /pseudo
(430 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript... 147 9e-36
CO982349 147 1e-35
BI972659 135 5e-32
CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polym... 116 2e-26
TC231922 113 2e-25
AI496436 107 2e-25
TC221865 103 1e-22
TC222557 62 3e-21
TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {A... 97 2e-20
CF922212 93 3e-19
BM891241 74 1e-18
TC213061 89 4e-18
AW757033 83 2e-16
BM891637 83 2e-16
CO979823 82 4e-16
TC231841 80 1e-15
CO986021 80 1e-15
TC233956 76 3e-14
CO984521 75 6e-14
BG239687 75 7e-14
>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase
(Fragment) , partial (59%)
Length = 1077
Score = 147 bits (371), Expect = 9e-36
Identities = 62/154 (40%), Positives = 104/154 (67%)
Frame = +1
Query: 1 LKALLRGFEMASGLKVNFAKSCLIGVNVGREFMDAACNFMNCREGSPPFQYLGLPVGANP 60
+K +LR FE+ S L++NFAKSC V ++ A N+++C + PF YLG+P+GAN
Sbjct: 448 IKVILRSFELVSNLRINFAKSCFGVFGVTDQWKQEAANYLHCSLLAFPFIYLGIPIGANS 627
Query: 61 RRLSTWEPLLDVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRVV 120
RR W+ ++ +++L+ W +++S GGRV L+ +VL +IP ++ +FF++P V ++V
Sbjct: 628 RRCHMWDSIIRKCERKLSKWK*RHISFGGRVTLIKSVLTSIPIYFFSFFRVPQSVVDKLV 807
Query: 121 RIQREFLWGGVNGGKKVCWVKWATVCLPRDKGGL 154
+I R FLWGG KK+ W++W +CLP+++GG+
Sbjct: 808 KI*RTFLWGGGPDQKKISWIRWEKLCLPKERGGI 909
>CO982349
Length = 795
Score = 147 bits (370), Expect = 1e-35
Identities = 67/148 (45%), Positives = 100/148 (67%)
Frame = +3
Query: 1 LKALLRGFEMASGLKVNFAKSCLIGVNVGREFMDAACNFMNCREGSPPFQYLGLPVGANP 60
+K +LR FE+ASGLK+NFA+S + + A F+NC S PF YLG+P+ ANP
Sbjct: 351 IKTILRCFELASGLKINFAESRFGAIWKPDHWCKEAAEFLNCSMLSMPFSYLGIPIEANP 530
Query: 61 RRLSTWEPLLDVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRVV 120
R +P++ + +L W +++SLGGRV L+NA+L A+P ++ +FF+ P KV +++V
Sbjct: 531 RCREI*DPIIRKCETKLARWKQRHISLGGRVTLINAILTALPIYFFSFFRAPSKVVQKLV 710
Query: 121 RIQREFLWGGVNGGKKVCWVKWATVCLP 148
IQR+FLWGG + +++ WVKW TVCLP
Sbjct: 711 NIQRKFLWGGGSXQRRIAWVKWETVCLP 794
>BI972659
Length = 453
Score = 135 bits (339), Expect = 5e-32
Identities = 60/140 (42%), Positives = 90/140 (63%)
Frame = +1
Query: 1 LKALLRGFEMASGLKVNFAKSCLIGVNVGREFMDAACNFMNCREGSPPFQYLGLPVGANP 60
LK++LRGFEM SGL++N+AKS V + A +NCR+ PF YLG+P+
Sbjct: 34 LKSMLRGFEMVSGLRINYAKSQFGIVGFQPNWAHDAAQLLNCRQLDIPFHYLGMPIAVKA 213
Query: 61 RRLSTWEPLLDVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRVV 120
WEPL++ K +L+ W KY+S+GGRV L+ +VLNA+P + L+FFK+P ++ ++V
Sbjct: 214 SSRMVWEPLINKFKAKLSKWNQKYLSMGGRVTLIKSVLNALPIYLLSFFKIPQRIVDKLV 393
Query: 121 RIQREFLWGGVNGGKKVCWV 140
+QR F+WGG ++ WV
Sbjct: 394 SLQRTFMWGGNQHHNRISWV 453
>CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polymerase
homolog T24M8.8 - Arabidopsis thaliana, partial (4%)
Length = 456
Score = 116 bits (290), Expect = 2e-26
Identities = 58/147 (39%), Positives = 80/147 (53%)
Frame = +2
Query: 107 AFFKLPVKVWKRVVRIQREFLWGGVNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISL 166
+FF LP K+ ++ +QR FLWGG +K+ WV W TVCLP+ KGGLG++D++ N +L
Sbjct: 5 SFFSLP*KIIAKLESLQRRFLWGGEADSRKIAWVNWKTVCLPKAKGGLGIKDLRTFNTTL 184
Query: 167 LAKWRWRLVQPEQPL*KDVLRCKYGSRINFLLDPIYNSWSSLASRWWLDLMSLEGVVGAN 226
L KWRW L +Q VL+ KYG S S S WW DL+ + +
Sbjct: 185 LGKWRWDLFYIQQEPWAKVLQSKYGGWRAL----EEGSSGSKDSAWWKDLIKTQQLQRNI 352
Query: 227 WFNREMVRKVGNGETTRFWLDHWVGNE 253
RE + KVG G+ +FW D W +
Sbjct: 353 PLKRETIWKVGGGDRIKFWEDLWTNTD 433
>TC231922
Length = 803
Score = 113 bits (282), Expect = 2e-25
Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 6/219 (2%)
Frame = -3
Query: 210 SRWWLDLMSLEGVVGANWFNREMVRKVGNGETTRFWLDHWVGNEA-LYLTFPRLFSISSQ 268
S WW DL L + ++ MV +VG G+ +FW D W+ L + +L++IS Q
Sbjct: 777 SHWWKDLRRLYNQPDFHSIHQNMVWRVGCGDKIKFWQDSWLSEGCNLQQKYNQLYTISRQ 598
Query: 269 KEAMVGEVWVDGD----WNLTWRRSLFVWEEGLIHILLDELEGREV-SEPMDSWWWKLEE 323
+ ++ W WRR LF +E + ++E+ G + ++ DS +WK +
Sbjct: 597 *NLTISKMGKFSQNARSWEFKWRRRLFDYEYAMAVDFMNEISGISIQNQAHDSMFWKADS 418
Query: 324 GGICSVSSSYSLHVKLQMPPEPLENTKAMVFGSVWKSPTPFKVVVFSWQSLLDRIPTKDN 383
G+ S S+Y L + + P P +F +W P + VFSW+ LDR+PT+ N
Sbjct: 417 SGVYSTKSAYRLLMP-SISPAPSRR----IFQILWHLKIPPRAAVFSWRLFLDRLPTRGN 253
Query: 384 LLKRRILPTESSVRCVFCDQVGETAAHLFLHCDMSFKVW 422
L RR +P + + C C E A HLF HC M+ +W
Sbjct: 252 -LSRRSIPIQ-DIMCPLCGCQHEEAGHLFFHCKMTKGLW 142
>AI496436
Length = 414
Score = 107 bits (267), Expect(2) = 2e-25
Identities = 52/112 (46%), Positives = 75/112 (66%)
Frame = +1
Query: 4 LLRGFEMASGLKVNFAKSCLIGVNVGREFMDAACNFMNCREGSPPFQYLGLPVGANPRRL 63
+LR FE++SGLK+NFAKS + + A +++N S PF YLG+P+GAN R
Sbjct: 4 ILRCFELSSGLKINFAKSQFGTICKSDIWRKEAADYLNSSVLSMPFVYLGIPIGANSRHS 183
Query: 64 STWEPLLDVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKV 115
WEP++ +++L SW KYVS GGRV L+N+VL A+P + L+FF++P KV
Sbjct: 184 DVWEPVVRKCERKLASWKQKYVSFGGRVTLINSVLTALPIYLLSFFRIPDKV 339
Score = 26.6 bits (57), Expect(2) = 2e-25
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 114 KVWKRVVRIQREFLWGGVNGGKKVCW 139
K+ ++ IQR FLWGG +K+ W
Sbjct: 335 KL*TKLTIIQRRFLWGGDLE*RKIAW 412
>TC221865
Length = 1045
Score = 103 bits (257), Expect = 1e-22
Identities = 65/198 (32%), Positives = 97/198 (48%), Gaps = 6/198 (3%)
Frame = -3
Query: 231 EMVRKVGNGETTRFWLDHWVGN-EALYLTFPRLFSISSQKEAMVGEVW----VDGDWNLT 285
E+V KVG G+ RFW D VG E L +PR++ IS Q++ ++ +V +W
Sbjct: 938 EIVWKVGCGDKFRFWEDKLVGEGETLMRKYPRMYQISCQQQQLIQQVGSHTETTWEWKFQ 759
Query: 286 WRRSLFVWEEGLIHILLDELEGREVSEPM-DSWWWKLEEGGICSVSSSYSLHVKLQMPPE 344
WRR LF E L+++ + + D W WK E G S S+Y L M E
Sbjct: 758 WRRPLFDNEVDTTIGFLEDISRFPIHRHLTDCWVWKSEPNGHYSTRSAYHL-----MQHE 594
Query: 345 PLENTKAMVFGSVWKSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQV 404
+ F +WK P K +F+ + + DR+PTK+NL +R++ + C+FC
Sbjct: 593 AAKANTDPAFEEIWKLKIPAKAAIFA*RLVKDRLPTKNNLRRRQV--QLNGTLCLFCRNY 420
Query: 405 GETAAHLFLHCDMSFKVW 422
E A+HLF C + VW
Sbjct: 419 EEEASHLFFSCTKTQPVW 366
>TC222557
Length = 1002
Score = 62.4 bits (150), Expect(2) = 3e-21
Identities = 38/110 (34%), Positives = 54/110 (48%), Gaps = 9/110 (8%)
Frame = +3
Query: 235 KVGNGETTRFWLDHW-VGNEALYLTFPRLFSISSQKEAMV-------GEVWVDGDWNLTW 286
KVG G+ RFW D W + E L +PRL++IS Q++ ++ VW +W L W
Sbjct: 72 KVGCGDKIRFWEDCWLMEQEPLRAKYPRLYNISCQQQKLILVMGFHSANVW---EWKLEW 242
Query: 287 RRSLFVWEEGLIHILLDELEGREVSE-PMDSWWWKLEEGGICSVSSSYSL 335
RR LF E LD++ + +D W WK E G S S+Y +
Sbjct: 243 RRHLFDNEVQAAASFLDDISWGHIDRWTLDCWVWKPEPNGQFSTRSAYRM 392
Score = 57.4 bits (137), Expect(2) = 3e-21
Identities = 24/66 (36%), Positives = 40/66 (60%)
Frame = +1
Query: 357 VWKSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQVGETAAHLFLHCD 416
+W+ P K F+W+ + +RIPTK NL +RR+ +++ C FC++ E A+HLF +C
Sbjct: 439 LWQLKIPLKATTFAWRLIKERIPTKGNLWRRRV--QLNNLMCPFCNRQEEEASHLFFNCP 612
Query: 417 MSFKVW 422
+W
Sbjct: 613 RILPLW 630
>TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {Arabidopsis
thaliana;} , partial (18%)
Length = 759
Score = 96.7 bits (239), Expect = 2e-20
Identities = 40/95 (42%), Positives = 62/95 (65%)
Frame = +2
Query: 87 LGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRVVRIQREFLWGGVNGGKKVCWVKWATVC 146
+GGRV L+ +VL+A+P L+FFK+P ++ ++V +QR+FLWGG ++ WVKWA +C
Sbjct: 2 MGGRVTLIKSVLSALPIXXLSFFKIPQRIVDKLVTLQRQFLWGGTQHHNRIPWVKWADIC 181
Query: 147 LPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQPL 181
P+ GGLG++D+ N +L +W W L L
Sbjct: 182 NPKIDGGLGIKDLSNFNAALRGRWIWGLASNHNQL 286
>CF922212
Length = 445
Score = 92.8 bits (229), Expect = 3e-19
Identities = 54/149 (36%), Positives = 76/149 (50%), Gaps = 10/149 (6%)
Frame = -2
Query: 111 LPVKVWKRVVRIQREFLWGGVNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKW 170
+P KV ++VR+Q+ FLWGG G KK+ WV W +VCLP++K GLG RD++ N +LL K
Sbjct: 441 VPNKVLDKLVRLQQWFLWGGGLGQKKIAWVNWDSVCLPKEKEGLGNRDLRKFNYALLGKR 262
Query: 171 RWRLVQPEQPL*KDVLRCKYGSRINFLLDPIYNSWSSL--------ASRWWLDLMSL-EG 221
RW L + L G+R+ LD Y W +L S WW ++ +
Sbjct: 261 RWNLFHHQGEL---------GARV---LDSKYKRWRNLDEERRVKSESFWWQEISFITHS 118
Query: 222 VVGANWF-NREMVRKVGNGETTRFWLDHW 249
+WF R ++G RFW D W
Sbjct: 117 TEDGSWFEKRTKTGRLGCRAKVRFWEDGW 31
>BM891241
Length = 407
Score = 73.9 bits (180), Expect(2) = 1e-18
Identities = 32/68 (47%), Positives = 43/68 (63%)
Frame = -2
Query: 129 GGVNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQPL*KDVLRC 188
GG + KK+ WVKW VCLP+ KGGLG++D+ NI+LL KW W L +Q L ++
Sbjct: 406 GGDHDHKKIPWVKWEVVCLPKTKGGLGIKDISKFNIALLGKWIWALASDQQQLWARIINS 227
Query: 189 KYGSRINF 196
KYG +F
Sbjct: 226 KYGGWSDF 203
Score = 37.4 bits (85), Expect(2) = 1e-18
Identities = 20/58 (34%), Positives = 29/58 (49%), Gaps = 1/58 (1%)
Frame = -3
Query: 210 SRWWLDLMSLEGVVGANWFNREMVRKVGNGETTRFWLDHWVGNE-ALYLTFPRLFSIS 266
S WW DL + F++ M KVG G+ FW D W+G + L + +LF I+
Sbjct: 174 SYWWRDLRKFYHQSDHSIFHQYMSWKVGCGDKINFWTDKWLGEDYTLEQKYNQLFLIN 1
>TC213061
Length = 823
Score = 89.0 bits (219), Expect = 4e-18
Identities = 47/143 (32%), Positives = 74/143 (50%), Gaps = 1/143 (0%)
Frame = +2
Query: 281 DWNLTWRRSLFVWEEGLIHILLDELEGREV-SEPMDSWWWKLEEGGICSVSSSYSLHVKL 339
+W WRR LF E ++ + E+EG ++ S+ D W W E G S+Y + ++
Sbjct: 23 EWQFQWRRPLFDSEIEMLVAFIQEVEGHKIRSDIEDQWVWAAESSGSYLARSAYRV-IRE 199
Query: 340 QMPPEPLENTKAMVFGSVWKSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCV 399
+P E + F +WK P KV +F+W+ L D +PT+DNL ++R+ E C
Sbjct: 200 GIPEEEQDRE----FKELWKLKVPMKVTMFAWRLLKDILPTRDNLRRKRVELHE--YVCP 361
Query: 400 FCDQVGETAAHLFLHCDMSFKVW 422
C + E+A+HLF HC +W
Sbjct: 362 LCRSMDESASHLFFHCSKILPIW 430
>AW757033
Length = 441
Score = 83.2 bits (204), Expect = 2e-16
Identities = 38/70 (54%), Positives = 50/70 (71%)
Frame = -2
Query: 1 LKALLRGFEMASGLKVNFAKSCLIGVNVGREFMDAACNFMNCREGSPPFQYLGLPVGANP 60
+K +LRGFE+ASGLK+NFAKS ++V + A FMNC S PF YLG+P+GANP
Sbjct: 215 IKTILRGFELASGLKINFAKSRFGAISVPD*WRKEAAEFMNCSLLSLPFSYLGIPIGANP 36
Query: 61 RRLSTWEPLL 70
RR TW+P++
Sbjct: 35 RRRETWDPII 6
>BM891637
Length = 427
Score = 83.2 bits (204), Expect = 2e-16
Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 1/144 (0%)
Frame = -1
Query: 134 GKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQPL*KDVLRCKYGSR 193
GKK+ W+ W C D GGLG++D+K++N +LL KW+W + L +L KY
Sbjct: 421 GKKIAWISWRQCCASGDVGGLGIKDIKILNNALLIKWKWLMFHQPHQLWNRILISKYKGW 242
Query: 194 INFLLDPIYNSWSSLASRWWLDLMSLEGVVGANWFNREMVRKVGNGETTRFWLDHWVGN- 252
P S WW DL ++ + + KVG G+ FW D WV +
Sbjct: 241 RGLDQGP----QKYYFSPWWADLRAINQHQSMIAASNQFCWKVGRGDQILFWEDSWVDDG 74
Query: 253 EALYLTFPRLFSISSQKEAMVGEV 276
L FP L+ +SSQ+ ++ ++
Sbjct: 73 TPLKDQFPELYRLSSQRNFIMADM 2
>CO979823
Length = 853
Score = 82.4 bits (202), Expect = 4e-16
Identities = 46/140 (32%), Positives = 71/140 (49%), Gaps = 1/140 (0%)
Frame = -2
Query: 284 LTWRRSLFVWEEGLIHILLDELEGREVS-EPMDSWWWKLEEGGICSVSSSYSLHVKLQMP 342
L WRR E + L E+ +++ + D W WK E GG S S Y HV
Sbjct: 798 LNWRRPXXDSEIAMADSFLGEITQQQIHPQREDKWLWKPEPGGHYSTKSGY--HVLWGEL 625
Query: 343 PEPLENTKAMVFGSVWKSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCD 402
E +++ F +WK P K VF+W+ + DR+PTK NL +R+++ + + C C+
Sbjct: 624 TEEIQDAD---FAEIWKLKIPTKAAVFAWRLVRDRLPTKSNLRRRQVMVQD--MVCPLCN 460
Query: 403 QVGETAAHLFLHCDMSFKVW 422
+ E AAHLF +C + +W
Sbjct: 459 NIEEGAAHLFFNCTKTLPLW 400
>TC231841
Length = 791
Score = 80.5 bits (197), Expect = 1e-15
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Frame = +3
Query: 302 LDELEGREVSEPM-DSWWWKLEEGGICSVSSSYSLHVKLQMPPEPLENTKAMVFGSVWKS 360
L E+EG + D W WK + G + S+Y + + E E + VF +WK
Sbjct: 21 LREVEGHRIQPQQGDQWVWKADPSGQYTAKSAYGV-----LWGEMFEEQQDGVFEELWKL 185
Query: 361 PTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQVGETAAHLFLHCDMSFK 420
P K+ +F+W+ + DR+PT+ NL +++I RC FC E+AAHLF HC
Sbjct: 186 KLPSKITIFAWRLIRDRLPTRSNLRRKQI--EVDDPRCPFCRSAEESAAHLFFHCSRIAP 359
Query: 421 VW 422
VW
Sbjct: 360 VW 365
>CO986021
Length = 900
Score = 80.5 bits (197), Expect = 1e-15
Identities = 44/143 (30%), Positives = 68/143 (46%), Gaps = 1/143 (0%)
Frame = -1
Query: 281 DWNLTWRRSLFVWEEGLIHILLDELEGREVSEPM-DSWWWKLEEGGICSVSSSYSLHVKL 339
+W+ WRR+LF E +D++ + + + DS WK + GI S S+Y L +
Sbjct: 888 NWDFKWRRNLFDHENEQAIAFMDDISAISIHQQLQDSMLWKADPTGIYSTKSAYRLLLPN 709
Query: 340 QMPPEPLENTKAMVFGSVWKSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCV 399
P + N K + WK P + +FSW+ DR+ + NLL+R + + C
Sbjct: 708 NRPGQHSSNFKIL-----WKLKIPPRAELFSWRLFRDRLSIRANLLRRHV--ALQDIMCP 550
Query: 400 FCDQVGETAAHLFLHCDMSFKVW 422
C E A HLF HC M+ +W
Sbjct: 549 LCGNHQEEAGHLFFHCRMTIGLW 481
>TC233956
Length = 757
Score = 76.3 bits (186), Expect = 3e-14
Identities = 40/108 (37%), Positives = 59/108 (54%)
Frame = +2
Query: 315 DSWWWKLEEGGICSVSSSYSLHVKLQMPPEPLENTKAMVFGSVWKSPTPFKVVVFSWQSL 374
D+W W+ E GI S S+Y + +K ++ E + + F +W+ P K + F W+ L
Sbjct: 59 DTWVWRAESTGIISTKSAYQV-IKSELDDEG----QHLGFKKLWEIKVPPKALSFVWRLL 223
Query: 375 LDRIPTKDNLLKRRILPTESSVRCVFCDQVGETAAHLFLHCDMSFKVW 422
DR+PTKDNL+KR+I + C FC ETA+HLF C +W
Sbjct: 224 WDRLPTKDNLIKRQIQVEDD--LCPFCHSQSETASHLFFTCGKIMPLW 361
>CO984521
Length = 716
Score = 75.1 bits (183), Expect = 6e-14
Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Frame = -2
Query: 302 LDELEGREVS-EPMDSWWWKLEEGGICSVSSSYSLHVKLQMPPEPLENTKAMVFGSVWKS 360
L +LEG + E D W W E G S S+Y + + E ++ K F +WK
Sbjct: 688 LQQLEGFTIRPELSDQWKWAAEPSGCYSTKSAYKALHHVTVGEE--QDGK---FKELWKL 524
Query: 361 PTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQVGETAAHLFLHCDMSFK 420
P KV +F+W+ + D++PTK NL K+R+ E C C V ETA+HLF HC
Sbjct: 523 RVPLKVAIFAWRLIQDKLPTKANLRKKRVELQE--YLCPLCRSVEETASHLFFHCSKVSP 350
Query: 421 VW 422
+W
Sbjct: 349 LW 344
>BG239687
Length = 443
Score = 74.7 bits (182), Expect = 7e-14
Identities = 45/110 (40%), Positives = 58/110 (51%), Gaps = 1/110 (0%)
Frame = -3
Query: 286 WRRSLFVWEEGLIHILLDELEGREVS-EPMDSWWWKLEEGGICSVSSSYSLHVKLQMPPE 344
W R+LF WE L+ L+EL EV DSW WK E G +V +Y L + +
Sbjct: 318 WGRNLFEWERELVAKFLEELHLVEVK*NEEDSWVWKSNESGGYNVRDAYMLILH-----D 154
Query: 345 PLENTKAMVFGSVWKSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTES 394
L + A + VWK+ P V FSW L DRI TK+NL KRRI T++
Sbjct: 153 GLVDEHANILKQVWKASIPSNVAAFSWSLLQDRIQTKENLSKRRIELTDN 4
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.325 0.141 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,618,015
Number of Sequences: 63676
Number of extensions: 482928
Number of successful extensions: 3267
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 3167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3207
length of query: 430
length of database: 12,639,632
effective HSP length: 100
effective length of query: 330
effective length of database: 6,272,032
effective search space: 2069770560
effective search space used: 2069770560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Medicago: description of AC146564.8