Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146561.5 + phase: 2 /pseudo/partial
         (263 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC213648 weakly similar to UP|Q7XHN9 (Q7XHN9) Tetratricopeptide ...   442  e-125
BM085131                                                              248  2e-66
CD399839                                                              233  7e-62
CO983443                                                              137  5e-33
AW306578                                                              127  7e-30
CA937139                                                               59  2e-09
BG157401                                                               47  7e-06
TC228958 similar to UP|MCCB_ARATH (Q9LDD8) Methylcrotonyl-CoA ca...    28  4.3
BE805007 homologue to GP|27355823|dbj glycolate oxidase iron-sul...    28  4.3
BE609719                                                               27  7.3
TC224268                                                               27  9.5
TC219732 similar to UP|PEAM_SPIOL (Q9M571) Phosphoethanolamine N...    27  9.5

>TC213648 weakly similar to UP|Q7XHN9 (Q7XHN9) Tetratricopeptide
           repeat(TPR)-containing protein-like, partial (19%)
          Length = 727

 Score =  442 bits (1137), Expect = e-125
 Identities = 206/234 (88%), Positives = 222/234 (94%)
 Frame = +2

Query: 27  YERTLDIAKTVMKERSYVHGKTDQIIHLSNDGKLEEIMHAKSCSDLYKVVGEDFWSSTWC 86
           +ERTL+IAKTVMKERS+VH KTD+IIHLS DGKLEEIMHAK CSDLYKVVGEDFW +TWC
Sbjct: 2   HERTLEIAKTVMKERSFVHSKTDKIIHLSKDGKLEEIMHAKLCSDLYKVVGEDFWLATWC 181

Query: 87  NSTAFEGKQLEGTRVTLVKMGQHGFDFAIRTPCTPARWEDYDAEMAMAWEALCNAYCGEN 146
           NSTAFEGKQLEGTR+ LVKMG+HGFDFAI+TPCTPARWED+D EMA+AWE LCNAYCGEN
Sbjct: 182 NSTAFEGKQLEGTRINLVKMGEHGFDFAIKTPCTPARWEDFDEEMAVAWETLCNAYCGEN 361

Query: 147 YGSTDFDVLENVRDAILRMTYYWYNFMPLSRGTAAVGFAVMLGLLLAANMEFTGSIPQGF 206
           YGSTDFD LENV DAILRMTYYWYNFMPLSRG+A VGF VMLGLLLAANMEFTGSIPQGF
Sbjct: 362 YGSTDFDTLENVLDAILRMTYYWYNFMPLSRGSAVVGFIVMLGLLLAANMEFTGSIPQGF 541

Query: 207 QVDWEAILNLDPNSFVDSVKSWLYPSLKVTTSWKDYHDVASTFATTGSVVAALS 260
           QVDWEAILNLDPNSFVDSVK+WLYPSLKVTTSWKDY D+ASTFATTGSV++AL+
Sbjct: 542 QVDWEAILNLDPNSFVDSVKTWLYPSLKVTTSWKDYPDIASTFATTGSVISALN 703


>BM085131 
          Length = 370

 Score =  248 bits (633), Expect = 2e-66
 Identities = 115/123 (93%), Positives = 120/123 (97%)
 Frame = +2

Query: 82  SSTWCNSTAFEGKQLEGTRVTLVKMGQHGFDFAIRTPCTPARWEDYDAEMAMAWEALCNA 141
           SSTWCNSTAFEGKQLEGTR+TLVKMG++GFDFAIRTPCTPARWEDYDAEMAMAWEALCNA
Sbjct: 2   SSTWCNSTAFEGKQLEGTRITLVKMGENGFDFAIRTPCTPARWEDYDAEMAMAWEALCNA 181

Query: 142 YCGENYGSTDFDVLENVRDAILRMTYYWYNFMPLSRGTAAVGFAVMLGLLLAANMEFTGS 201
           YCG+ YGSTDFDVLENVRDAILRMTYYWYNFMPLSRG+A VGF VMLGLLLAANMEFTGS
Sbjct: 182 YCGDFYGSTDFDVLENVRDAILRMTYYWYNFMPLSRGSAVVGFVVMLGLLLAANMEFTGS 361

Query: 202 IPQ 204
           IPQ
Sbjct: 362 IPQ 370


>CD399839 
          Length = 528

 Score =  233 bits (594), Expect = 7e-62
 Identities = 111/129 (86%), Positives = 120/129 (92%), Gaps = 1/129 (0%)
 Frame = -3

Query: 136 EALCNAYCGENYGSTDFDVLENVRDAILRMTYYWYNFMPLSRGTAAVGFAVMLGLLLAAN 195
           + LC+AYCGENYGSTDFD LENVRDAILRMTYYWYNFMPLSRG+  VGF VMLGLLLAAN
Sbjct: 508 QTLCHAYCGENYGSTDFDPLENVRDAILRMTYYWYNFMPLSRGSPGVGFIVMLGLLLAAN 329

Query: 196 MEFTGSIPQGFQVDWEAILNLDPNSFVDSVKSWLYPSLKVTTSWKDYHDVASTFATTGSV 255
           MEFTGSIPQG QVDWEA+LNLDPNSFVDSVK+WLYPSLKVTTSWKDY D+ASTFATTGS 
Sbjct: 328 MEFTGSIPQGLQVDWEALLNLDPNSFVDSVKTWLYPSLKVTTSWKDYPDIASTFATTGSA 149

Query: 256 VAALS-SYD 263
           +AAL+ S+D
Sbjct: 148 LAALNFSFD 122


>CO983443 
          Length = 779

 Score =  137 bits (345), Expect = 5e-33
 Identities = 83/163 (50%), Positives = 91/163 (54%)
 Frame = -3

Query: 98  GTRVTLVKMGQHGFDFAIRTPCTPARWEDYDAEMAMAWEALCNAYCGENYGSTDFDVLEN 157
           G +    K G+ GFDFAIRTPCTPARWEDYDAEM MAWE   +A                
Sbjct: 738 GDKDNTCKNGELGFDFAIRTPCTPARWEDYDAEMPMAWEV*LHA---------------- 607

Query: 158 VRDAILRMTYYWYNFMPLSRGTAAVGFAVMLGLLLAANMEFTGSIPQGFQVDWEAILNLD 217
               + R+          SR     GF       +          P  F   WE+ILNLD
Sbjct: 606 ---TVPRIC--------CSRICCHAGFVTCC*YGVHRKH------PTRFSG*WESILNLD 478

Query: 218 PNSFVDSVKSWLYPSLKVTTSWKDYHDVASTFATTGSVVAALS 260
           PN   DSVKSWLYPSLKVTTSWK+YHDVASTFATTGSVVAALS
Sbjct: 477 PNCLGDSVKSWLYPSLKVTTSWKEYHDVASTFATTGSVVAALS 349



 Score =  102 bits (254), Expect = 2e-22
 Identities = 64/129 (49%), Positives = 70/129 (53%), Gaps = 3/129 (2%)
 Frame = -1

Query: 84  TWCNSTAFEGKQLEGTRVTLVKMGQHGFDFAIRTPCTPARWEDYDAEMAMAWEALCNAYC 143
           TWCNSTAFEGKQLEGTR+TLVKMG                       + +  E L +   
Sbjct: 779 TWCNSTAFEGKQLEGTRITLVKMG--------------------SLVLTLQLEHLVHLLD 660

Query: 144 GENYGSTDFDVLENVRDAILRMTYYW---YNFMPLSRGTAAVGFAVMLGLLLAANMEFTG 200
           G                 I+     W   YNFM LSRG+A VGF VMLGLLLAANMEFTG
Sbjct: 659 GR----------------IMMQKCQWHGKYNFMLLSRGSAVVGFVVMLGLLLAANMEFTG 528

Query: 201 SIPQGFQVD 209
           SIPQGFQVD
Sbjct: 527 SIPQGFQVD 501


>AW306578 
          Length = 425

 Score =  127 bits (318), Expect = 7e-30
 Identities = 60/62 (96%), Positives = 61/62 (97%)
 Frame = +3

Query: 202 IPQGFQVDWEAILNLDPNSFVDSVKSWLYPSLKVTTSWKDYHDVASTFATTGSVVAALSS 261
           IPQGFQVDWEA+LNLDPNSFVDSVKSWLYPSLKVTTSWKDYHDVASTFATTGSVVAALSS
Sbjct: 6   IPQGFQVDWEAVLNLDPNSFVDSVKSWLYPSLKVTTSWKDYHDVASTFATTGSVVAALSS 185

Query: 262 YD 263
            D
Sbjct: 186 SD 191


>CA937139 
          Length = 422

 Score = 58.9 bits (141), Expect = 2e-09
 Identities = 29/57 (50%), Positives = 41/57 (71%)
 Frame = +1

Query: 8   GSHTPMILGQAKVVRYFPNYERTLDIAKTVMKERSYVHGKTDQIIHLSNDGKLEEIM 64
           G +  +++G +  +     + RTLDIAKTV+KE+SYV+ KTDQII L  DGKLEE++
Sbjct: 142 GHYL*ILVGSSSGMLILFKHHRTLDIAKTVIKEKSYVYSKTDQIICLFKDGKLEEVV 312


>BG157401 
          Length = 404

 Score = 47.4 bits (111), Expect = 7e-06
 Identities = 23/24 (95%), Positives = 23/24 (95%)
 Frame = +2

Query: 240 KDYHDVASTFATTGSVVAALSSYD 263
           KDYHDVASTFATTGSVVAALSS D
Sbjct: 5   KDYHDVASTFATTGSVVAALSSSD 76


>TC228958 similar to UP|MCCB_ARATH (Q9LDD8) Methylcrotonyl-CoA carboxylase
           beta chain, mitochondrial precursor
           (3-Methylcrotonyl-CoA carboxylase 2) (MCCase beta
           subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase
           beta subunit) , partial (63%)
          Length = 1226

 Score = 28.1 bits (61), Expect = 4.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 117 TPCTPARWEDYDAEMAMAWE 136
           TPCT A WE+Y+ E A  WE
Sbjct: 280 TPCTCA-WEEYN*EFAYGWE 336


>BE805007 homologue to GP|27355823|dbj glycolate oxidase iron-sulfur subunit
           {Bradyrhizobium japonicum USDA 110}, partial (4%)
          Length = 411

 Score = 28.1 bits (61), Expect = 4.3
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -2

Query: 216 LDPNSFVDSVKSWLYPSLKVTTSWKDYHDVASTFATT--GSVVAALSS 261
           LD    V   +SWL  S     SW  Y    +T ATT   +++A L+S
Sbjct: 146 LDMRQMVGLARSWLLDSASSMGSWPGYAWAEATRATTNRAAIMAVLTS 3


>BE609719 
          Length = 337

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 48  TDQIIHLSNDGKLEEIMHAK-SCSDLYKVVGEDFWSSTWCNSTAFEGK 94
           T + ++ S++ +   +   + +C  L+++VGE  WS   C S    G+
Sbjct: 183 TQECVNNSDEARAPSLQSCR*NCPKLFEIVGEKPWSKRVCVSPCLGGE 326


>TC224268 
          Length = 789

 Score = 26.9 bits (58), Expect = 9.5
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = -3

Query: 175 LSRGTAAVGFAVMLGLLLAANMEFTGSIPQGFQVDWEAILNLDPNSFVDSVKSWLYPSLK 234
           + R  +++GF      L +   +F G+      V    +  LDP+S V SVK+ L  S +
Sbjct: 472 MDRWKSSLGFPE----LASTTTQFPGTTVDSSAVSLSDMAELDPSSVVASVKNLLEESKR 305

Query: 235 VTTSWKD 241
           + +S  D
Sbjct: 304 MGSSLGD 284


>TC219732 similar to UP|PEAM_SPIOL (Q9M571) Phosphoethanolamine
           N-methyltransferase  , partial (48%)
          Length = 812

 Score = 26.9 bits (58), Expect = 9.5
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +1

Query: 28  ERTLDIAKTVMKERSYVHGKTDQIIHLSNDGKLEEIMHAKSCSDLYKVVGEDFWS 82
           +RT    KT+ +E + +H K D  I   ++    EI        +    GE  WS
Sbjct: 526 DRTNLFMKTLQQELNALHSKKDDFIDDFSEEDYNEITERWKAKQMRGADGEQIWS 690


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.319    0.134    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,755,052
Number of Sequences: 63676
Number of extensions: 175434
Number of successful extensions: 830
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of query: 263
length of database: 12,639,632
effective HSP length: 95
effective length of query: 168
effective length of database: 6,590,412
effective search space: 1107189216
effective search space used: 1107189216
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)


Medicago: description of AC146561.5