BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146557.10 - phase: 0
(2492 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 370 e-102
CF922488 331 2e-90
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 278 2e-74
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 217 3e-70
NP595172 polyprotein [Glycine max] 229 1e-59
NP334778 reverse transcriptase [Glycine max] 219 2e-56
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 204 5e-52
BQ628592 106 2e-47
NP395547 reverse transcriptase [Glycine max] 185 2e-46
NP395548 reverse transcriptase [Glycine max] 176 9e-44
TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotei... 170 8e-42
TC232528 weakly similar to UP|Q6WAY5 (Q6WAY5) Gag/pol polyprotei... 155 2e-37
BI498328 123 1e-27
TC222199 110 8e-24
AW184779 109 1e-23
BG839293 108 3e-23
TC216808 65 1e-21
BI316922 100 1e-20
BE804087 83 2e-15
BI321666 80 1e-14
>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
Length = 843
Score = 370 bits (951), Expect = e-102
Identities = 171/274 (62%), Positives = 210/274 (76%)
Frame = +1
Query: 2039 NHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDYKPWYYDIKQFLLSREYPPGASKQ 2098
N D+P I+ +P+H + E D KPWY+DIK++++S+EY P +
Sbjct: 46 NAARDLPYIEFWCRGKPAHCCQV--------EEERDGKPWYFDIKRYVISKEYLPEIADN 201
Query: 2099 DKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSR 2158
DK+TLRRLA+ F + G ILYKRN+DM LRCVD EA ++ +VH+G+FGTHA GH M+R
Sbjct: 202 DKRTLRRLAAGFFMSGSILYKRNHDMKPLRCVDAREANHMIEEVHEGSFGTHANGHAMAR 381
Query: 2159 KLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRI 2218
K+LRAGYYW+ ME DC + RKCHKCQ +AD ++ PPH LNVMSSPWPFSMWGID+IG I
Sbjct: 382 KILRAGYYWLTMESDCCVHVRKCHKCQAFADNVNAPPHPLNVMSSPWPFSMWGIDVIGAI 561
Query: 2219 EPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTN 2278
EPKASNGHRFILVAIDYFTKWVEAASYT+V + VV +FIK IICRYG+P KIITDNGTN
Sbjct: 562 EPKASNGHRFILVAIDYFTKWVEAASYTDVMRGVVVRFIKKEIICRYGLPRKIITDNGTN 741
Query: 2279 LNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAA 2312
LNN ++ +CEEFKI+HHN +PYRP+MN AVE A
Sbjct: 742 LNNKMMGEICEEFKIQHHNPTPYRPKMN*AVEVA 843
>CF922488
Length = 741
Score = 331 bits (849), Expect = 2e-90
Identities = 167/246 (67%), Positives = 192/246 (77%)
Frame = +3
Query: 1495 VPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSP 1554
V K+DGKV MCVD+RDLN ASPKD FPLPHI+VLVDNT FSFMDGFSGYNQIK++P
Sbjct: 3 VLKEDGKV*MCVDYRDLN*ASPKDKFPLPHINVLVDNTTSFSQFSFMDGFSGYNQIKIAP 182
Query: 1555 EDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMTHKEVEVYVDDMIVKSTD 1614
ED EKT+FIT WGTFCYK M FGL N GATYQR M LF DM HKE+EVY+DDMIVKS
Sbjct: 183 EDMEKTTFITLWGTFCYKAMSFGLKNVGATYQRAMVALF*DMMHKEIEVYMDDMIVKSRT 362
Query: 1615 EEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMP 1674
EE+H+ L K+F RLRKY+LRLNP KC F V+S KLL FI S +GIEVD +KV+ I EM
Sbjct: 363 EEEHLVNLRKLFRRLRKYRLRLNPAKCMFEVKSRKLLDFIDS*RGIEVDSNKVKVILEMA 542
Query: 1675 APRTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKKYLL 1734
P TEKQV+GFLGRLNYI RFIS + ATC P+F LL KNQ V W+ +C AF+ IK+ L+
Sbjct: 543 KPHTEKQVQGFLGRLNYIVRFIS*LIATCEPLFILLCKNQFVKWDHDC*VAFERIKQCLI 722
Query: 1735 EPPILV 1740
P +LV
Sbjct: 723 NPHVLV 740
>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 669
Score = 278 bits (711), Expect = 2e-74
Identities = 130/183 (71%), Positives = 159/183 (86%)
Frame = +1
Query: 2310 EAANKNIKRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 2369
EAANKNIK+I+QKM +YKDWHEMLP+ALHGYRT+VR+STGATPFSLVYGMEAVLP EVE
Sbjct: 1 EAANKNIKKIIQKMTVSYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPFEVE 180
Query: 2370 IPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVRPREFK 2429
+PSLR++ E+ L E+EW Q+RYDQLNLIE KR+ AM+ G+ YQ RMK+AFDKKV R+F
Sbjct: 181 VPSLRILAESGLKESEWAQTRYDQLNLIEGKRLTAMSHGRLYQQRMKSAFDKKVCLRKFH 360
Query: 2430 VGELVLKRRISQQPDPRGKWAPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 2489
G+LVLK+ D RGKWAPNYEGP+VVK+AFSGGAL+LT+MDG ELP+P+N+D+VK+
Sbjct: 361 EGDLVLKKMSHAVKDHRGKWAPNYEGPFVVKRAFSGGALVLTNMDGEELPSPMNSDVVKR 540
Query: 2490 YFA 2492
Y+A
Sbjct: 541 YYA 549
>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
Length = 803
Score = 217 bits (552), Expect(2) = 3e-70
Identities = 104/207 (50%), Positives = 143/207 (68%)
Frame = +2
Query: 1961 IEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPR 2020
++ AID +K L +YGDSALVI+Q++GE ET LIPY+ Y + L +F ++ HH+
Sbjct: 206 VQAAIDSNVKLLKVYGDSALVIHQLRGECETRDPNLIPYQAYIKELAGFFDEISFHHVA* 385
Query: 2021 DENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDYKPWYY 2080
+ENQMADALATL SMF++ D+P I+ + RP+H + E D KPWY+
Sbjct: 386 EENQMADALATLVSMFQLTPHGDLPYIEFRCRGRPAHCCLV--------EEERDGKPWYF 541
Query: 2081 DIKQFLLSREYPPGASKQDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMH 2140
DIK+++ S+EYP AS DK+ RRLA+ F + G ILYKRN+DMVLL CV+ E E ++
Sbjct: 542 DIKRYVESKEYPLEASDNDKRRKRRLAAGFFMSGSILYKRNHDMVLLHCVNGKEVENMLG 721
Query: 2141 DVHDGTFGTHATGHTMSRKLLRAGYYW 2167
+VH+G+FGTH+ GH M+RK+LRAGYYW
Sbjct: 722 EVHEGSFGTHSNGHAMARKILRAGYYW 802
Score = 69.7 bits (169), Expect(2) = 3e-70
Identities = 34/60 (56%), Positives = 41/60 (67%), Gaps = 1/60 (1%)
Frame = +1
Query: 1899 LIEEGPDPN-SKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1957
L EE D + KW + FD A N G G+GA++VSP IPFT R+ F+CTNNMAEYEAC
Sbjct: 16 LFEEKLDEDRDKWIVWFDRASNVLGHGVGAILVSPDNQCIPFTTRLGFDCTNNMAEYEAC 195
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 229 bits (583), Expect = 1e-59
Identities = 151/465 (32%), Positives = 236/465 (50%), Gaps = 1/465 (0%)
Frame = +1
Query: 1405 LEEGVKRKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMA 1464
L + ++ LL Y +FA P + +H IP K PV+ + R
Sbjct: 1660 LPTNIDPELAILLHTYAQVFAVPASLPPQREQ---DHAIPLKQGSGPVKVRPYRYPHTQK 1830
Query: 1465 LKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPH 1524
+I+ +Q+ + G + P + I+ V KKDG R C D+R LN + KD+FP+P
Sbjct: 1831 DQIEKMIQEMLVQGIIQPSNSP-FSLPILLVKKKDGSWRFCTDYRALNAITVKDSFPMPT 2007
Query: 1525 IDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGAT 1584
+D L+D ++ FS +D SGY+QI + PEDREKT+F T G + + VMPFGL NA AT
Sbjct: 2008 VDELLDELHGAQYFSKLDLRSGYHQILVQPEDREKTAFRTHHGHYEWLVMPFGLTNAPAT 2187
Query: 1585 YQRGMTTLFHDMTHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFG 1644
+Q M +F K V V+ DD+++ S + H+++L + + L++++L +KC+FG
Sbjct: 2188 FQCLMNKIFQFALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLSKCSFG 2367
Query: 1645 VRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGFLGRLNYISRFISHMTATCG 1704
LG VS G+ ++ KV+A+ + P P KQ+RGFLG Y RFI G
Sbjct: 2368 DTEVDYLGHKVSGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLTGYYRRFIKSYANIAG 2547
Query: 1705 PIFKLLRKNQPVVWNDECQEAFDSIKKYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLG 1764
P+ LL+K+ +WN+E + AF +KK + E P+L P +P I+ +G VLG
Sbjct: 2548 PLTDLLQKDS-FLWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILETDASGIGVGAVLG 2724
Query: 1765 QQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDP 1824
Q H I Y SKK + + + A+ A + RHYL+ + + +
Sbjct: 2725 QNG------HPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQRS 2886
Query: 1825 IKYIFEKAAVTGKIARWQMLLSEYDIVFKTQ-KAIKGSILADHLA 1868
+K + +++ T + W YD FK + K K + AD L+
Sbjct: 2887 LKSLMDQSLQTPEQQAWLHKFLGYD--FKIEYKPGKDNQAADALS 3015
Score = 97.8 bits (242), Expect = 5e-20
Identities = 141/555 (25%), Positives = 230/555 (41%), Gaps = 14/555 (2%)
Frame = +1
Query: 1919 NAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDS 1978
+A G G+GAV+ GH I + ++ L + Y + I EA+ + +H +
Sbjct: 2689 DASGIGVGAVL-GQNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALS-KFRHYLLGNKF 2862
Query: 1979 ALVINQIKGEWETHHAKLIPYRD-YARRLLTYFTKVELHHIPRDENQMADALATLSSMFR 2037
+ +Q + + P + + + L Y K+E + P +NQ ADAL S MF
Sbjct: 2863 IIRTDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIE--YKPGKDNQAADAL---SRMFM 3027
Query: 2038 VNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDYKPWYYDIKQFLLSREYPPGASK 2097
+ W++ I ++ L I D +KQ L Y GA
Sbjct: 3028 LA-WSEPHSIFLEELRAR----LISDP----------------HLKQ--LMETYKQGAD- 3135
Query: 2098 QDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMS 2157
AS + + +LY + D V++ +E +++ + H G HA G T +
Sbjct: 3136 ---------ASHYTVREGLLYWK--DRVVIPA-EEEIVNKILQEYHSSPIGGHA-GITRT 3276
Query: 2158 RKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMW---GIDM 2214
L+A +YW M+ D Y +KC CQ +P L + P P +W +D
Sbjct: 3277 LARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPL--PIPQQVWEDVAMDF 3450
Query: 2215 IGRIEPKASNGHRFILVAIDYFTKWVEAASY-TNVTKQVVAKFIKNNIICRYGVPSKIIT 2273
I + S G I+V ID TK+ + +VVA+ ++I+ +G+P I++
Sbjct: 3451 ITGLPN--SFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGIPRSIVS 3624
Query: 2274 DNGTNLNNNVVQALCEEFKIEHHN---SSPYRPQMNGAVEAANKNIKRIVQKMVTTY-KD 2329
D + Q L FK++ SS Y PQ +G E NK ++ ++ + K
Sbjct: 3625 DRDRVFTSTFWQHL---FKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEHPKG 3795
Query: 2330 WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQS 2389
W + LP+A Y T S G TPF +YG E P+L + AE +
Sbjct: 3796 WVKALPWAEFWYNTAYHMSLGMTPFRALYGREP--------PTLTRQACSIDDPAEVREQ 3951
Query: 2390 RYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVRPREFKVGELVL-----KRRISQQPD 2444
D+ L+ + +++ + R Q MK DKK F++G+ VL R+ S
Sbjct: 3952 LTDRDALLAKLKIN-LTRAQQV---MKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLR 4119
Query: 2445 PRGKWAPNYEGPYVV 2459
K + Y GP+ V
Sbjct: 4120 KNQKLSMRYFGPFKV 4164
>NP334778 reverse transcriptase [Glycine max]
Length = 431
Score = 219 bits (557), Expect = 2e-56
Identities = 101/143 (70%), Positives = 116/143 (80%)
Frame = +3
Query: 1503 RMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSF 1562
RMCVD+RDLN+ASPKDNFPLPHID+L+ N A +FSFMDGFSGYNQIKM+PED EKT+F
Sbjct: 3 RMCVDYRDLNRASPKDNFPLPHIDILMANMASFALFSFMDGFSGYNQIKMAPEDMEKTTF 182
Query: 1563 ITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMTHKEVEVYVDDMIVKSTDEEQHVEYL 1622
IT WGTFCYKVM FGL N GATY R M LF DM HKE+E YVD+MI KS EE+H+ L
Sbjct: 183 ITLWGTFCYKVMSFGLKNFGATYHRAMVALFQDMMHKEIEAYVDEMIAKSRMEEEHLVNL 362
Query: 1623 TKMFERLRKYKLRLNPNKCTFGV 1645
+F +LRKY+LRLNP KC FG+
Sbjct: 363 QNLFGQLRKYRLRLNPRKCVFGL 431
>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 402
Score = 204 bits (518), Expect = 5e-52
Identities = 96/133 (72%), Positives = 112/133 (84%)
Frame = +2
Query: 1538 FSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMT 1597
FSFMDGFSGYNQI M+ ED EKT+F+T WGTF Y+VM FGL N GATYQR M LFHDM
Sbjct: 2 FSFMDGFSGYNQI*MAREDVEKTTFVTLWGTFSYRVMAFGLKNTGATYQRAMVALFHDMM 181
Query: 1598 HKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQ 1657
HKE+EVYVDDMI KS E +H+ L K+F RL+KY+L+LNP KCTFGV+SGKLLGFIVSQ
Sbjct: 182 HKEIEVYVDDMIAKSRTETEHLVNLCKLFGRLQKYQLKLNPTKCTFGVKSGKLLGFIVSQ 361
Query: 1658 KGIEVDPDKVRAI 1670
KGIE+DP+KV+A+
Sbjct: 362 KGIEIDPEKVKAL 400
>BQ628592
Length = 423
Score = 106 bits (264), Expect(2) = 2e-47
Identities = 47/76 (61%), Positives = 59/76 (76%)
Frame = -1
Query: 1710 LRKNQPVVWNDECQEAFDSIKKYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDET 1769
L KNQ ++WN QEAF+ IK+ L P +L+PPV GRP ++Y+ + DESMGCVL Q D++
Sbjct: 423 LPKNQAILWNSNYQEAFEKIKQSLANPSVLMPPVTGRPFLLYMTMLDESMGCVLVQHDDS 244
Query: 1770 GKKEHAIYYLSKKFTD 1785
GKKE AIYYLSKKFTD
Sbjct: 243 GKKEQAIYYLSKKFTD 196
Score = 104 bits (259), Expect(2) = 2e-47
Identities = 43/61 (70%), Positives = 56/61 (91%)
Frame = -3
Query: 1790 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYD 1849
Y+MLE+TCC L WA+ RLR Y+++HTTWLIS+MDP+KYIFEK A+TG+IARWQ+LLSE++
Sbjct: 184 YSMLERTCCTLVWASHRLRQYMLSHTTWLISKMDPVKYIFEKPALTGRIARWQVLLSEFN 5
Query: 1850 I 1850
I
Sbjct: 4 I 2
>NP395547 reverse transcriptase [Glycine max]
Length = 762
Score = 185 bits (469), Expect = 2e-46
Identities = 95/252 (37%), Positives = 142/252 (55%), Gaps = 18/252 (7%)
Frame = +1
Query: 1467 IKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKV------------------RMCVDF 1508
++ EV K ++AG + + WV+ + VPKK G RMC+D+
Sbjct: 1 VRKEVFKLLEAGLIYPISDSSWVSPVQVVPKKGGMTVVKNDRNELIPTRRVTRWRMCIDY 180
Query: 1509 RDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGT 1568
R LN+A+ KD++PLP +D ++ A+ + F+DG+SGYNQI + P+D+EKT+F P+
Sbjct: 181 RKLNEATRKDHYPLPFMDQMLKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCPFSV 360
Query: 1569 FCYKVMPFGLINAGATYQRGMTTLFHDMTHKEVEVYVDDMIVKSTDEEQHVEYLTKMFER 1628
F Y+ MPFGL NA T+QR M +F DM K +EV++DD + L K+ +R
Sbjct: 361 FAYRRMPFGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLANLEKVLQR 540
Query: 1629 LRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGFLGR 1688
K L LN KC F V+ G +LG +S++GIEV +K+ I ++P P K + FLG
Sbjct: 541 CEKSNLVLNWEKCHFMVQEGIVLGHKISKRGIEVVKEKLDVIDKLPPPVNVKGIHSFLGH 720
Query: 1689 LNYISRFISHMT 1700
+ + RFI T
Sbjct: 721 VGFYRRFIKDFT 756
>NP395548 reverse transcriptase [Glycine max]
Length = 762
Score = 176 bits (447), Expect = 9e-44
Identities = 90/252 (35%), Positives = 141/252 (55%), Gaps = 18/252 (7%)
Frame = +1
Query: 1467 IKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKV------------------RMCVDF 1508
++ EV K ++ G + + WV+ ++ V KK+G ++C+D+
Sbjct: 1 VRKEVLKLLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDY 180
Query: 1509 RDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGT 1568
R LN+A+ KD+FPLP +D +++ A + F+D + GYNQI + P+D+EK +F P+G
Sbjct: 181 RKLNEATRKDHFPLPFMDQMLERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCPFGV 360
Query: 1569 FCYKVMPFGLINAGATYQRGMTTLFHDMTHKEVEVYVDDMIVKSTDEEQHVEYLTKMFER 1628
F Y+ +PFGL NA T+Q M +F D+ K +EV++DD V E ++ L + +R
Sbjct: 361 FAYRRIPFGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKKLEMVLQR 540
Query: 1629 LRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGFLGR 1688
+ L LN KC F VR G +LG +S +GIEVD K+ I ++P P K +R FLG+
Sbjct: 541 CVETNLVLNWEKCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKGIRSFLGQ 720
Query: 1689 LNYISRFISHMT 1700
+ RFI T
Sbjct: 721 ARFYRRFIKDFT 756
>TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotein (Fragment),
partial (8%)
Length = 1320
Score = 170 bits (430), Expect = 8e-42
Identities = 83/158 (52%), Positives = 111/158 (69%), Gaps = 4/158 (2%)
Frame = +3
Query: 1343 TVPPSFDFP--VYEAKDE--EGDGIPYEITRLLEQEKKAIQPHQEEIELVNIGTEENKRE 1398
T PS DF + + +DE E G+P E+ R++ E + + PHQEE ELV++G+ KRE
Sbjct: 846 TWDPSIDFEQKMNQTEDEGNEDVGLPPELERMVAHEDQEMGPHQEETELVDLGSGSGKRE 1025
Query: 1399 IKIGATLEEGVKRKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRR 1458
+KIG + ++ ++I LLR+Y DIFAWSY+DMPGL IV+HR+P PEC PV+QKLRR
Sbjct: 1026 VKIGTGITAPIREELIILLRDYQDIFAWSYQDMPGLSSDIVQHRLPLNPECSPVKQKLRR 1205
Query: 1459 THPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVP 1496
P+ +LKIK EV+K DAGFL YP+WVANIVP+P
Sbjct: 1206 MKPETSLKIKEEVKK*FDAGFLAVARYPKWVANIVPIP 1319
Score = 62.8 bits (151), Expect = 2e-09
Identities = 45/125 (36%), Positives = 56/125 (44%), Gaps = 15/125 (12%)
Frame = +1
Query: 1168 PWIHDAGAVTSTLHQKLKFVKNGKLVTIHGEEAYLVSQLLSFSCIEAGSAE-GTAFQGLT 1226
PWIH G V STLHQKLKFV G LV + GEE LVS S +EA TAFQ
Sbjct: 1 PWIHSVGVVPSTLHQKLKFVVEGHLVIVSGEEDILVSCPSSMPYVEAAEESLETAFQSFE 180
Query: 1227 IEGAEPKEAGAAMASLKD-----AQRAIQEGQTAGWG---------KVIRLCENKRKEGL 1272
+ ++ L D A+ + G G G +I N+ K GL
Sbjct: 181 VVSISSVDSLFGQPCLSDAAVMMARVMLGNGYEPGMGLGKDNGGITSLINTQGNRGKYGL 360
Query: 1273 GFSPS 1277
G+ P+
Sbjct: 361 GYKPT 375
>TC232528 weakly similar to UP|Q6WAY5 (Q6WAY5) Gag/pol polyprotein (Fragment),
partial (3%)
Length = 449
Score = 155 bits (392), Expect = 2e-37
Identities = 72/137 (52%), Positives = 105/137 (76%)
Frame = +1
Query: 1009 SKISVLSLLLSSEAHKNTLLKVLEQAYVDHEVTVDRFGGIVGNITACNNLWFSEEELPEA 1068
+++S+L LL+SSE H+ L+KVL +A+V +++V+ FGG+V NITA N L F+EEE+P
Sbjct: 31 ARVSLLELLMSSEPHRALLVKVLNEAHVAQDISVEGFGGLVNNITANNYLAFAEEEIPAE 210
Query: 1069 GKSHNLALHISVNCKSDMISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKAFDG 1128
G+ HN ALH+SV C +++ VL+D G SLNVMPK+TLD+L + + L+ S+ +V+AFDG
Sbjct: 211 GRGHNKALHVSVKCMDHIVAKVLIDNGYSLNVMPKSTLDKLPFNASHLKPSSMVVRAFDG 390
Query: 1129 SRKNVLGEIDLPITIGP 1145
+R+ V GEIDLP+ IGP
Sbjct: 391 TRREVRGEIDLPVQIGP 441
>BI498328
Length = 335
Score = 123 bits (308), Expect = 1e-27
Identities = 64/118 (54%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Frame = +1
Query: 1854 TQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYL-KSKDCEEPLIEEGPDPNSKWGL 1912
TQKA+KGS LAD+LA PL Y+P+ +FPDE+IM L + K E + +KW +
Sbjct: 4 TQKAVKGSALADYLAQ*PLQGYRPMHPEFPDEDIMALFEEKRTHEDI--------NKWIV 159
Query: 1913 VFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIK 1970
FDGA NA G G+GAV+VSP IPFTAR+ F+CTNNMAEYEAC G++ AID +K
Sbjct: 160 CFDGASNALGHGVGAVLVSPDDQCIPFTARLGFDCTNNMAEYEACALGVQAAIDFDVK 333
>TC222199
Length = 691
Score = 110 bits (275), Expect = 8e-24
Identities = 75/230 (32%), Positives = 114/230 (48%), Gaps = 24/230 (10%)
Frame = +2
Query: 68 DFQLVPTLEAYSNLVGLPIAEKTPFTG----PGTSLTPLVIAKDLYLKTSDVSNHLITKS 123
DFQLVPT+E + ++G P+ E+ P+ P S P ++ KD V T++
Sbjct: 5 DFQLVPTIEEFEEILGCPLGERKPYLSSGCLPSLSRIPTMV-KDSARGLDRVKQ---TRN 172
Query: 124 HIRGFTSKYLLEQANLSTTRQDTLEA--ILALLIYGLILFPNLDNFVDMNAIEVF----H 177
I G KYL ++A + D + +LALLI+G++LFPN+D VD+ AI+ F H
Sbjct: 173 GIAGLPRKYLEDKARGIANQGDWVPFMDVLALLIFGVVLFPNVDGLVDLAAIDAFLAYHH 352
Query: 178 SK-NPVPTLLADTYHAIHDRTLKGRGYILCCISLLYRWFISHL---------PSSFH--- 224
SK +PV +LAD + + R K I+CC+ L W +SHL P H
Sbjct: 353 SKESPVVAVLADLFDTFNRRYEKSSARIICCLPALCVWLVSHLFQQDTRRPCPLLSHRSC 532
Query: 225 DNSENWSYSQRIMALTPNEVVWITPAAQAKE-IIIGCGDFLNVPLLGTRG 273
+ Q + + + W + KE ++ CG + N+PL+GTRG
Sbjct: 533 TEKRRIDWDQLLAGIGGRTISWFPRWKEGKEGVLFSCGRYPNIPLVGTRG 682
>AW184779
Length = 432
Score = 109 bits (273), Expect = 1e-23
Identities = 47/74 (63%), Positives = 59/74 (79%)
Frame = +1
Query: 2112 LDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAME 2171
L +ILYKRN+DMVLLRCVD EAEQ++ +VH+G+FGTHA H M++K+LR GYYW+ ME
Sbjct: 1 LSRNILYKRNHDMVLLRCVDAREAEQMLVEVHEGSFGTHANIHAMAQKILRVGYYWLTME 180
Query: 2172 HDCYQYARKCHKCQ 2185
DC + KCHKCQ
Sbjct: 181 SDCCIHVWKCHKCQ 222
Score = 84.7 bits (208), Expect = 4e-16
Identities = 50/114 (43%), Positives = 60/114 (51%), Gaps = 22/114 (19%)
Frame = +3
Query: 2164 GYYWMAMEHDCY------------QYA-RKCHKCQIYADKIHVPPHALNVMSSPWPF--- 2207
G W +H C+ Y R H C + VP +M +P P+
Sbjct: 99 GILWNTCQHTCHGPEDSESGVLLAHYGERLLHPC---VEMP*VPVRPSLIMLTPHPYL*M 269
Query: 2208 ------SMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAK 2255
MWGID+IG IEPKASNGH FILVAIDYFTKWVEA SY +VT+ VV +
Sbjct: 270 SWQHLGHMWGIDVIGAIEPKASNGHHFILVAIDYFTKWVEAVSYASVTRSVVIR 431
>BG839293
Length = 781
Score = 108 bits (270), Expect = 3e-23
Identities = 50/110 (45%), Positives = 75/110 (67%), Gaps = 2/110 (1%)
Frame = +1
Query: 1347 SFDFPVYEAKDE--EGDGIPYEITRLLEQEKKAIQPHQEEIELVNIGTEENKREIKIGAT 1404
+F+ + +DE E G+P E+ R++ E + + PHQEE ELV++G KRE+KIG
Sbjct: 400 NFEQETSQTEDEGNEDVGLPPELERMVAHEDQEMGPHQEETELVDLGIGSGKREVKIGTG 579
Query: 1405 LEEGVKRKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQ 1454
+ ++ ++I LL++Y DIFAWSY+DMPGL IV+H++P PEC PV+Q
Sbjct: 580 ITAPIREELIILLKDYQDIFAWSYQDMPGLSSDIVQHQLPLNPECSPVKQ 729
>TC216808
Length = 1144
Score = 65.5 bits (158), Expect(2) = 1e-21
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Frame = +2
Query: 8 KFKEVDLVSLRELA--LKVKSQTGFRLRYGGLLTLLRTDVDEKLVHSLVQFYDPSFRCFT 65
K K +++ SL EL + + FR YG + L R +V + + SL Q+YD RCFT
Sbjct: 164 KIKSLEVTSLGELGQLMGQLQR*AFRKAYGKIWDLARVEVSMEPIASLSQYYDQPLRCFT 343
Query: 66 FPDFQLVPTLEAYSNLVGLPIAEKTPFTGPGTSLTPLVIAKDLYLKTSDVSNHLITKSHI 125
F DFQLVPT++ + G + + P+ G + +AK + + +++ ++ +
Sbjct: 344 FEDFQLVPTVKELEEIRGCQLGGRKPYLFSGFYPSTTRVAKVVKISAQELNRVKQNRNGV 523
Query: 126 RGFTSKYLLEQA 137
G K L E+A
Sbjct: 524 VGVPRKCLEERA 559
Score = 58.2 bits (139), Expect(2) = 1e-21
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Frame = +3
Query: 150 ILALLIYGLILFPNLDNFVDMNAIEVF----HSK-NPVPTLLADTYHAIHDRTLKGRGYI 204
ILALLI+G++LFPN++ VD+ AI+ F H K +PV +LA Y K I
Sbjct: 603 ILALLIFGVVLFPNMEGLVDLAAIDAFLAFHHGKESPVVAILA-MYDTFDRGCEKSSARI 779
Query: 205 LCCISLLYRWFISHL 219
+CC LY W +SHL
Sbjct: 780 VCCALALYVWLVSHL 824
>BI316922
Length = 405
Score = 99.8 bits (247), Expect = 1e-20
Identities = 46/135 (34%), Positives = 80/135 (59%)
Frame = +3
Query: 2141 DVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNV 2200
++H G G H+ M+ ++LR GYY M C +Y +KC +C + + H+ L+
Sbjct: 3 EMHRGICGMHSKSQLMTTRVLRVGYY**TMRKYCTEYVKKCEEC*KFGNISHLLVEELHN 182
Query: 2201 MSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNN 2260
+ +PWPF++ G+D++ R P + +++LV ID FTKW+E ++ V KF+ N
Sbjct: 183 IVAPWPFAI*GVDIL-RPFPLSKRQVKYLLVGIDQFTKWIETEHIAIISIANVRKFV*RN 359
Query: 2261 IICRYGVPSKIITDN 2275
I+C +G+P+ +I+DN
Sbjct: 360 IVC*FGIPNTLISDN 404
>BE804087
Length = 160
Score = 82.8 bits (203), Expect = 2e-15
Identities = 38/53 (71%), Positives = 44/53 (82%)
Frame = +2
Query: 2310 EAANKNIKRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEA 2362
EAANKNIK+ + KM +YKDWHEM +ALH YRT VR+STGATP+SLVYG EA
Sbjct: 2 EAANKNIKKNI*KMTVSYKDWHEMFSFALHMYRTLVRTSTGATPYSLVYGKEA 160
>BI321666
Length = 430
Score = 80.1 bits (196), Expect = 1e-14
Identities = 44/129 (34%), Positives = 71/129 (54%), Gaps = 3/129 (2%)
Frame = +2
Query: 2156 MSRKLLRAGYYWMAMEHDCYQYARKCHKCQ---IYADKIHVPPHALNVMSSPWPFSMWGI 2212
+S +L++ +Y ++ D Y +A+ C+KCQ + + +P H + + F WGI
Sbjct: 2 ISTNVLQSRFYLPSIFKDAYVHAQSCNKCQRTRSVSKRNELPLHTILEVEI---FDYWGI 172
Query: 2213 DMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKII 2272
D +G P SN +ILV +DY +KWVEA + ++V KF+K I R GVP +I
Sbjct: 173 DFVGPFPPSFSN--EYILVVVDYVSKWVEAVACQKSDAKIVIKFLKKQIFSRLGVPWVLI 346
Query: 2273 TDNGTNLNN 2281
+ G++L N
Sbjct: 347 DNGGSHLCN 373
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,587,049
Number of Sequences: 63676
Number of extensions: 1592383
Number of successful extensions: 11112
Number of sequences better than 10.0: 144
Number of HSP's better than 10.0 without gapping: 9289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10356
length of query: 2492
length of database: 12,639,632
effective HSP length: 113
effective length of query: 2379
effective length of database: 5,444,244
effective search space: 12951856476
effective search space used: 12951856476
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Medicago: description of AC146557.10