BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146556.9 + phase: 0
(2244 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 371 e-102
CF922488 331 2e-90
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 276 6e-74
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 215 2e-69
NP595172 polyprotein [Glycine max] 229 1e-59
NP334778 reverse transcriptase [Glycine max] 219 8e-57
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 204 3e-52
BQ628592 106 2e-47
NP395547 reverse transcriptase [Glycine max] 186 8e-47
NP395548 reverse transcriptase [Glycine max] 178 3e-44
TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotei... 171 4e-42
TC232528 weakly similar to UP|Q6WAY5 (Q6WAY5) Gag/pol polyprotei... 156 8e-38
BI498328 125 2e-28
BG839293 112 2e-24
AW184779 111 3e-24
BI316922 101 3e-21
CF922341 100 1e-20
BE804087 83 2e-15
BI321666 80 1e-14
TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%) 63 1e-14
>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
Length = 843
Score = 371 bits (952), Expect = e-102
Identities = 171/274 (62%), Positives = 210/274 (76%)
Frame = +1
Query: 1791 NHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDYRPWYYDIKQFLLSREYPPGASKQ 1850
N D+P I+ +P+H + E D +PWY+DIK++++S+EY P +
Sbjct: 46 NAARDLPYIEFWCRGKPAHCCQV--------EEERDGKPWYFDIKRYVISKEYLPEIADN 201
Query: 1851 DKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSR 1910
DK+TLRRLA F + G ILYKRN+DM LRCVD EA ++ +VH+G+FGTHA GH M+R
Sbjct: 202 DKRTLRRLAAGFFMSGSILYKRNHDMKPLRCVDAREANHMIEEVHEGSFGTHANGHAMAR 381
Query: 1911 KLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRI 1970
K+LRAGYYW+TME DC + RKCHKCQ +AD ++ PPH LNVMSSPWPFSMWGID+IG I
Sbjct: 382 KILRAGYYWLTMESDCCVHVRKCHKCQAFADNVNAPPHPLNVMSSPWPFSMWGIDVIGAI 561
Query: 1971 EPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTN 2030
EPKASNGHRFILVAIDYFTKWVEAASYT+V + VV +FIK IICRYG+P KIITDNGTN
Sbjct: 562 EPKASNGHRFILVAIDYFTKWVEAASYTDVMRGVVVRFIKKEIICRYGLPRKIITDNGTN 741
Query: 2031 LNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAA 2064
LNN ++ +CEEFKI+HHN +PYRP+MN AVE A
Sbjct: 742 LNNKMMGEICEEFKIQHHNPTPYRPKMN*AVEVA 843
>CF922488
Length = 741
Score = 331 bits (849), Expect = 2e-90
Identities = 166/246 (67%), Positives = 192/246 (77%)
Frame = +3
Query: 1247 VPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSP 1306
V K+DGKV MCVD+RDLN ASPKD FPLPHI+VLVDNT FSFMDGFSGYNQIK++P
Sbjct: 3 VLKEDGKV*MCVDYRDLN*ASPKDKFPLPHINVLVDNTTSFSQFSFMDGFSGYNQIKIAP 182
Query: 1307 EDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTD 1366
ED EKT+FIT WGTFCYK M FGL N GATYQR M LF DM+HKE+EVY+DDMIVKS
Sbjct: 183 EDMEKTTFITLWGTFCYKAMSFGLKNVGATYQRAMVALF*DMMHKEIEVYMDDMIVKSRT 362
Query: 1367 EEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMP 1426
EE+H+ L K+F RLRKY+LRLNP KC F V+S KLL FI S +GIEVD +KV+ I EM
Sbjct: 363 EEEHLVNLRKLFRRLRKYRLRLNPAKCMFEVKSRKLLDFIDS*RGIEVDSNKVKVILEMA 542
Query: 1427 APQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLL 1486
P TEKQV+GFLGRLNYI RFIS + ATC P+F LL KNQ + W+ +C AF+ IK L+
Sbjct: 543 KPHTEKQVQGFLGRLNYIVRFIS*LIATCEPLFILLCKNQFVKWDHDC*VAFERIKQCLI 722
Query: 1487 EPPILV 1492
P +LV
Sbjct: 723 NPHVLV 740
>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 669
Score = 276 bits (707), Expect = 6e-74
Identities = 129/183 (70%), Positives = 158/183 (85%)
Frame = +1
Query: 2062 EAANKNIKRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 2121
EAANKNIK+I+QKM +YKDWHEMLP+ALHGYRT+VR+STGATPFSLVYGMEAVLP EVE
Sbjct: 1 EAANKNIKKIIQKMTVSYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPFEVE 180
Query: 2122 IPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFK 2181
+PSLR++ E+ L E+EW Q+RYDQLNLIE KR+ AM+ G+ YQ RMK+AFDKKV R+F
Sbjct: 181 VPSLRILAESGLKESEWAQTRYDQLNLIEGKRLTAMSHGRLYQQRMKSAFDKKVCLRKFH 360
Query: 2182 VGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 2241
G+LVLK+ D RGKW PNYEGP+VVK+AFSGGAL+LT+MDG ELP+P+N+D+VK+
Sbjct: 361 EGDLVLKKMSHAVKDHRGKWAPNYEGPFVVKRAFSGGALVLTNMDGEELPSPMNSDVVKR 540
Query: 2242 YFA 2244
Y+A
Sbjct: 541 YYA 549
>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
Length = 803
Score = 215 bits (548), Expect(2) = 2e-69
Identities = 103/207 (49%), Positives = 142/207 (67%)
Frame = +2
Query: 1713 IEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPR 1772
++ AID +K L +YGDSALVI+Q++GE ET LIPY+ Y + L +F ++ HH+
Sbjct: 206 VQAAIDSNVKLLKVYGDSALVIHQLRGECETRDPNLIPYQAYIKELAGFFDEISFHHVA* 385
Query: 1773 DENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDYRPWYY 1832
+ENQMADALATL SMF++ D+P I+ + RP+H + E D +PWY+
Sbjct: 386 EENQMADALATLVSMFQLTPHGDLPYIEFRCRGRPAHCCLV--------EEERDGKPWYF 541
Query: 1833 DIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMH 1892
DIK+++ S+EYP AS DK+ RRLA F + G ILYKRN+DMVLL CV+ E E ++
Sbjct: 542 DIKRYVESKEYPLEASDNDKRRKRRLAAGFFMSGSILYKRNHDMVLLHCVNGKEVENMLG 721
Query: 1893 DVHDGTFGTHATGHTMSRKLLRAGYYW 1919
+VH+G+FGTH+ GH M+RK+LRAGYYW
Sbjct: 722 EVHEGSFGTHSNGHAMARKILRAGYYW 802
Score = 68.6 bits (166), Expect(2) = 2e-69
Identities = 30/49 (61%), Positives = 36/49 (73%)
Frame = +1
Query: 1661 KWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1709
KW + FD A N G G+GA++VSP IPFT R+ F+CTNNMAEYEAC
Sbjct: 49 KWIVWFDRASNVLGHGVGAILVSPDNQCIPFTTRLGFDCTNNMAEYEAC 195
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 229 bits (583), Expect = 1e-59
Identities = 150/465 (32%), Positives = 236/465 (50%), Gaps = 1/465 (0%)
Frame = +1
Query: 1157 LEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHQIPTKPECPPVRQKLRRTHPDMA 1216
L + ++ LL Y +FA P + +H IP K PV+ + R
Sbjct: 1660 LPTNIDPELAILLHTYAQVFAVPASLPPQREQ---DHAIPLKQGSGPVKVRPYRYPHTQK 1830
Query: 1217 LKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPH 1276
+I+ +Q+ + G + P + I+ V KKDG R C D+R LN + KD+FP+P
Sbjct: 1831 DQIEKMIQEMLVQGIIQPSNSP-FSLPILLVKKKDGSWRFCTDYRALNAITVKDSFPMPT 2007
Query: 1277 IDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGAT 1336
+D L+D ++ FS +D SGY+QI + PEDREKT+F T G + + VMPFGL NA AT
Sbjct: 2008 VDELLDELHGAQYFSKLDLRSGYHQILVQPEDREKTAFRTHHGHYEWLVMPFGLTNAPAT 2187
Query: 1337 YQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFG 1396
+Q M +F + K V V+ DD+++ S + H+++L + + L++++L +KC+FG
Sbjct: 2188 FQCLMNKIFQFALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLSKCSFG 2367
Query: 1397 VRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCG 1456
LG VS G+ ++ KV+A+ + P P KQ+RGFLG Y RFI G
Sbjct: 2368 DTEVDYLGHKVSGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLTGYYRRFIKSYANIAG 2547
Query: 1457 PIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLG 1516
P+ LL+K+ +WN+E + AF +K + E P+L P +P I+ +G VLG
Sbjct: 2548 PLTDLLQKDS-FLWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILETDASGIGVGAVLG 2724
Query: 1517 QQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDP 1576
Q H I Y SKK + + + A+ A + RHYL+ + + +
Sbjct: 2725 QNG------HPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQRS 2886
Query: 1577 IKYIFEKAAVTGKIARWQMLLSEYDIVFKTQ-KAIKGSILADHLA 1620
+K + +++ T + W YD FK + K K + AD L+
Sbjct: 2887 LKSLMDQSLQTPEQQAWLHKFLGYD--FKIEYKPGKDNQAADALS 3015
Score = 95.9 bits (237), Expect = 2e-19
Identities = 140/555 (25%), Positives = 229/555 (41%), Gaps = 14/555 (2%)
Frame = +1
Query: 1671 NAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDS 1730
+A G G+GAV+ GH I + ++ L + Y + I EA+ + +H +
Sbjct: 2689 DASGIGVGAVL-GQNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALS-KFRHYLLGNKF 2862
Query: 1731 ALVINQIKGEWETHHAKLIPYRD-YARRLLTYFTKVELHHIPRDENQMADALATLSSMFR 1789
+ +Q + + P + + + L Y K+E + P +NQ ADAL S MF
Sbjct: 2863 IIRTDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIE--YKPGKDNQAADAL---SRMFM 3027
Query: 1790 VNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDYRPWYYDIKQFLLSREYPPGASK 1849
+ W++ I ++ L I D +KQ L Y GA
Sbjct: 3028 LA-WSEPHSIFLEELRAR----LISDP----------------HLKQ--LMETYKQGAD- 3135
Query: 1850 QDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMS 1909
A + + +LY + D V++ +E +++ + H G HA G T +
Sbjct: 3136 ---------ASHYTVREGLLYWK--DRVVIPA-EEEIVNKILQEYHSSPIGGHA-GITRT 3276
Query: 1910 RKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMW---GIDM 1966
L+A +YW M+ D Y +KC CQ +P L + P P +W +D
Sbjct: 3277 LARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPL--PIPQQVWEDVAMDF 3450
Query: 1967 IGRIEPKASNGHRFILVAIDYFTKWVEAASY-TNVTKQVVAKFIKNNIICRYGVPSKIIT 2025
I + S G I+V ID TK+ + +VVA+ ++I+ +G+P I++
Sbjct: 3451 ITGLPN--SFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGIPRSIVS 3624
Query: 2026 DNGTNLNNNVVQALCEEFKIEHHN---SSPYRPQMNGAVEAANKNIKRIVQKMVTTY-KD 2081
D + Q L FK++ SS Y PQ +G E NK ++ ++ + K
Sbjct: 3625 DRDRVFTSTFWQHL---FKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEHPKG 3795
Query: 2082 WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQS 2141
W + LP+A Y T S G TPF +YG E P+L + AE +
Sbjct: 3796 WVKALPWAEFWYNTAYHMSLGMTPFRALYGREP--------PTLTRQACSIDDPAEVREQ 3951
Query: 2142 RYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVL-----KRRISQQPD 2196
D+ L+ + +++ + R Q MK DKK F++G+ VL R+ S
Sbjct: 3952 LTDRDALLAKLKIN-LTRAQQV---MKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLR 4119
Query: 2197 PRGKWTPNYEGPYVV 2211
K + Y GP+ V
Sbjct: 4120 KNQKLSMRYFGPFKV 4164
>NP334778 reverse transcriptase [Glycine max]
Length = 431
Score = 219 bits (559), Expect = 8e-57
Identities = 101/143 (70%), Positives = 117/143 (81%)
Frame = +3
Query: 1255 RMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSF 1314
RMCVD+RDLN+ASPKDNFPLPHID+L+ N A +FSFMDGFSGYNQIKM+PED EKT+F
Sbjct: 3 RMCVDYRDLNRASPKDNFPLPHIDILMANMASFALFSFMDGFSGYNQIKMAPEDMEKTTF 182
Query: 1315 ITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYL 1374
IT WGTFCYKVM FGL N GATY R M LF DM+HKE+E YVD+MI KS EE+H+ L
Sbjct: 183 ITLWGTFCYKVMSFGLKNFGATYHRAMVALFQDMMHKEIEAYVDEMIAKSRMEEEHLVNL 362
Query: 1375 TKMFERLRKYKLRLNPNKCTFGV 1397
+F +LRKY+LRLNP KC FG+
Sbjct: 363 QNLFGQLRKYRLRLNPRKCVFGL 431
>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 402
Score = 204 bits (520), Expect = 3e-52
Identities = 96/133 (72%), Positives = 113/133 (84%)
Frame = +2
Query: 1290 FSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMI 1349
FSFMDGFSGYNQI M+ ED EKT+F+T WGTF Y+VM FGL N GATYQR M LFHDM+
Sbjct: 2 FSFMDGFSGYNQI*MAREDVEKTTFVTLWGTFSYRVMAFGLKNTGATYQRAMVALFHDMM 181
Query: 1350 HKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQ 1409
HKE+EVYVDDMI KS E +H+ L K+F RL+KY+L+LNP KCTFGV+SGKLLGFIVSQ
Sbjct: 182 HKEIEVYVDDMIAKSRTETEHLVNLCKLFGRLQKYQLKLNPTKCTFGVKSGKLLGFIVSQ 361
Query: 1410 KGIEVDPDKVRAI 1422
KGIE+DP+KV+A+
Sbjct: 362 KGIEIDPEKVKAL 400
>BQ628592
Length = 423
Score = 106 bits (264), Expect(2) = 2e-47
Identities = 48/76 (63%), Positives = 58/76 (76%)
Frame = -1
Query: 1462 LRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDET 1521
L KNQ I+WN QEAF+ IK L P +L+PPV GRP ++Y+ + DESMGCVL Q D++
Sbjct: 423 LPKNQAILWNSNYQEAFEKIKQSLANPSVLMPPVTGRPFLLYMTMLDESMGCVLVQHDDS 244
Query: 1522 GKKEHAIYYLSKKFTD 1537
GKKE AIYYLSKKFTD
Sbjct: 243 GKKEQAIYYLSKKFTD 196
Score = 104 bits (259), Expect(2) = 2e-47
Identities = 43/61 (70%), Positives = 56/61 (91%)
Frame = -3
Query: 1542 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYD 1601
Y+MLE+TCC L WA+ RLR Y+++HTTWLIS+MDP+KYIFEK A+TG+IARWQ+LLSE++
Sbjct: 184 YSMLERTCCTLVWASHRLRQYMLSHTTWLISKMDPVKYIFEKPALTGRIARWQVLLSEFN 5
Query: 1602 I 1602
I
Sbjct: 4 I 2
>NP395547 reverse transcriptase [Glycine max]
Length = 762
Score = 186 bits (473), Expect = 8e-47
Identities = 95/252 (37%), Positives = 143/252 (56%), Gaps = 18/252 (7%)
Frame = +1
Query: 1219 IKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKV------------------RMCVDF 1260
++ EV K ++AG + + WV+ + VPKK G RMC+D+
Sbjct: 1 VRKEVFKLLEAGLIYPISDSSWVSPVQVVPKKGGMTVVKNDRNELIPTRRVTRWRMCIDY 180
Query: 1261 RDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGT 1320
R LN+A+ KD++PLP +D ++ A+ + F+DG+SGYNQI + P+D+EKT+F P+
Sbjct: 181 RKLNEATRKDHYPLPFMDQMLKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCPFSV 360
Query: 1321 FCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFER 1380
F Y+ MPFGL NA T+QR M +F DM+ K +EV++DD + L K+ +R
Sbjct: 361 FAYRRMPFGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLANLEKVLQR 540
Query: 1381 LRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGR 1440
K L LN KC F V+ G +LG +S++GIEV +K+ I ++P P K + FLG
Sbjct: 541 CEKSNLVLNWEKCHFMVQEGIVLGHKISKRGIEVVKEKLDVIDKLPPPVNVKGIHSFLGH 720
Query: 1441 LNYISRFISHMT 1452
+ + RFI T
Sbjct: 721 VGFYRRFIKDFT 756
>NP395548 reverse transcriptase [Glycine max]
Length = 762
Score = 178 bits (451), Expect = 3e-44
Identities = 90/252 (35%), Positives = 142/252 (55%), Gaps = 18/252 (7%)
Frame = +1
Query: 1219 IKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKV------------------RMCVDF 1260
++ EV K ++ G + + WV+ ++ V KK+G ++C+D+
Sbjct: 1 VRKEVLKLLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDY 180
Query: 1261 RDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGT 1320
R LN+A+ KD+FPLP +D +++ A + F+D + GYNQI + P+D+EK +F P+G
Sbjct: 181 RKLNEATRKDHFPLPFMDQMLERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCPFGV 360
Query: 1321 FCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFER 1380
F Y+ +PFGL NA T+Q M +F D++ K +EV++DD V E ++ L + +R
Sbjct: 361 FAYRRIPFGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKKLEMVLQR 540
Query: 1381 LRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGR 1440
+ L LN KC F VR G +LG +S +GIEVD K+ I ++P P K +R FLG+
Sbjct: 541 CVETNLVLNWEKCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKGIRSFLGQ 720
Query: 1441 LNYISRFISHMT 1452
+ RFI T
Sbjct: 721 ARFYRRFIKDFT 756
>TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotein (Fragment),
partial (8%)
Length = 1320
Score = 171 bits (432), Expect = 4e-42
Identities = 82/158 (51%), Positives = 112/158 (69%), Gaps = 4/158 (2%)
Frame = +3
Query: 1095 TVPPSFDFP--VYEAEDEEGDDI--PYEITRLLEQEKKAIQPHQEEIELVNIGTEENKRE 1150
T PS DF + + EDE +D+ P E+ R++ E + + PHQEE ELV++G+ KRE
Sbjct: 846 TWDPSIDFEQKMNQTEDEGNEDVGLPPELERMVAHEDQEMGPHQEETELVDLGSGSGKRE 1025
Query: 1151 IKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHQIPTKPECPPVRQKLRR 1210
+KIG + +++++I LLR+Y DIFAWSY+DMPGL IV+H++P PEC PV+QKLRR
Sbjct: 1026 VKIGTGITAPIREELIILLRDYQDIFAWSYQDMPGLSSDIVQHRLPLNPECSPVKQKLRR 1205
Query: 1211 THPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVP 1248
P+ +LKIK EV+K DAGFL YP+WVANIVP+P
Sbjct: 1206 MKPETSLKIKEEVKK*FDAGFLAVARYPKWVANIVPIP 1319
Score = 63.5 bits (153), Expect = 1e-09
Identities = 45/125 (36%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Frame = +1
Query: 920 PWIHDAGAVTSTLHQKLKFIRNGKLVTVHGEEAYLVSQLTSFSCIEAGSAE-GTAFQGLT 978
PWIH G V STLHQKLKF+ G LV V GEE LVS +S +EA TAFQ
Sbjct: 1 PWIHSVGVVPSTLHQKLKFVVEGHLVIVSGEEDILVSCPSSMPYVEAAEESLETAFQSFE 180
Query: 979 IEGAEPKKAGAAMASLKD-----AQKVIQEGQTAGWG---------KVIQLCENKRKEGL 1024
+ + L D A+ ++ G G G +I N+ K GL
Sbjct: 181 VVSISSVDSLFGQPCLSDAAVMMARVMLGNGYEPGMGLGKDNGGITSLINTQGNRGKYGL 360
Query: 1025 GFSPS 1029
G+ P+
Sbjct: 361 GYKPT 375
>TC232528 weakly similar to UP|Q6WAY5 (Q6WAY5) Gag/pol polyprotein
(Fragment), partial (3%)
Length = 449
Score = 156 bits (395), Expect = 8e-38
Identities = 73/137 (53%), Positives = 105/137 (76%)
Frame = +1
Query: 761 SKISVLSLLLSSEAHRNTLLKVLEQAYVDHEVTVDRFGGIVGNITACNNLWFSEEELPEV 820
+++S+L LL+SSE HR L+KVL +A+V +++V+ FGG+V NITA N L F+EEE+P
Sbjct: 31 ARVSLLELLMSSEPHRALLVKVLNEAHVAQDISVEGFGGLVNNITANNYLAFAEEEIPAE 210
Query: 821 GKSHNLALHISVNCKSDLISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKAFDG 880
G+ HN ALH+SV C +++ VL+D G SLNVMPK+TLD+L + + L+ S+ +V+AFDG
Sbjct: 211 GRGHNKALHVSVKCMDHIVAKVLIDNGYSLNVMPKSTLDKLPFNASHLKPSSMVVRAFDG 390
Query: 881 SRKNVLGEIDLPITIGP 897
+R+ V GEIDLP+ IGP
Sbjct: 391 TRREVRGEIDLPVQIGP 441
>BI498328
Length = 335
Score = 125 bits (314), Expect = 2e-28
Identities = 66/117 (56%), Positives = 82/117 (69%)
Frame = +1
Query: 1606 TQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPISKWGLV 1665
TQKA+KGS LAD+LA PL Y+P+ +FPDE+IM L EE +E I+KW +
Sbjct: 4 TQKAVKGSALADYLAQ*PLQGYRPMHPEFPDEDIMAL----FEEKRTHED---INKWIVC 162
Query: 1666 FDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIK 1722
FDGA NA G G+GAV+VSP IPFTAR+ F+CTNNMAEYEAC G++ AID +K
Sbjct: 163 FDGASNALGHGVGAVLVSPDDQCIPFTARLGFDCTNNMAEYEACALGVQAAIDFDVK 333
>BG839293
Length = 781
Score = 112 bits (280), Expect = 2e-24
Identities = 51/110 (46%), Positives = 76/110 (68%), Gaps = 2/110 (1%)
Frame = +1
Query: 1099 SFDFPVYEAEDEEGDDI--PYEITRLLEQEKKAIQPHQEEIELVNIGTEENKREIKIGAT 1156
+F+ + EDE +D+ P E+ R++ E + + PHQEE ELV++G KRE+KIG
Sbjct: 400 NFEQETSQTEDEGNEDVGLPPELERMVAHEDQEMGPHQEETELVDLGIGSGKREVKIGTG 579
Query: 1157 LEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHQIPTKPECPPVRQ 1206
+ +++++I LL++Y DIFAWSY+DMPGL IV+HQ+P PEC PV+Q
Sbjct: 580 ITAPIREELIILLKDYQDIFAWSYQDMPGLSSDIVQHQLPLNPECSPVKQ 729
>AW184779
Length = 432
Score = 111 bits (278), Expect = 3e-24
Identities = 48/74 (64%), Positives = 60/74 (80%)
Frame = +1
Query: 1864 LDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTME 1923
L +ILYKRN+DMVLLRCVD EAEQ++ +VH+G+FGTHA H M++K+LR GYYW+TME
Sbjct: 1 LSRNILYKRNHDMVLLRCVDAREAEQMLVEVHEGSFGTHANIHAMAQKILRVGYYWLTME 180
Query: 1924 HDCYQYARKCHKCQ 1937
DC + KCHKCQ
Sbjct: 181 SDCCIHVWKCHKCQ 222
Score = 86.7 bits (213), Expect = 1e-16
Identities = 51/114 (44%), Positives = 61/114 (52%), Gaps = 22/114 (19%)
Frame = +3
Query: 1916 GYYWMTMEHDCY------------QYA-RKCHKCQIYADKIHVPPHALNVMSSPWPF--- 1959
G W T +H C+ Y R H C + VP +M +P P+
Sbjct: 99 GILWNTCQHTCHGPEDSESGVLLAHYGERLLHPC---VEMP*VPVRPSLIMLTPHPYL*M 269
Query: 1960 ------SMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAK 2007
MWGID+IG IEPKASNGH FILVAIDYFTKWVEA SY +VT+ VV +
Sbjct: 270 SWQHLGHMWGIDVIGAIEPKASNGHHFILVAIDYFTKWVEAVSYASVTRSVVIR 431
>BI316922
Length = 405
Score = 101 bits (252), Expect = 3e-21
Identities = 47/135 (34%), Positives = 81/135 (59%)
Frame = +3
Query: 1893 DVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVPPHALNV 1952
++H G G H+ M+ ++LR GYY TM C +Y +KC +C + + H+ L+
Sbjct: 3 EMHRGICGMHSKSQLMTTRVLRVGYY**TMRKYCTEYVKKCEEC*KFGNISHLLVEELHN 182
Query: 1953 MSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNN 2012
+ +PWPF++ G+D++ R P + +++LV ID FTKW+E ++ V KF+ N
Sbjct: 183 IVAPWPFAI*GVDIL-RPFPLSKRQVKYLLVGIDQFTKWIETEHIAIISIANVRKFV*RN 359
Query: 2013 IICRYGVPSKIITDN 2027
I+C +G+P+ +I+DN
Sbjct: 360 IVC*FGIPNTLISDN 404
>CF922341
Length = 675
Score = 99.8 bits (247), Expect = 1e-20
Identities = 63/172 (36%), Positives = 86/172 (49%), Gaps = 7/172 (4%)
Frame = +1
Query: 87 IPGANLTPVSTALTQAATTVTE---PIVNAVPLFVHANAHHGSTATTGTIEERMAELAK- 142
IP NL T LT A P+ N + + H +TT MAE+ K
Sbjct: 130 IPHHNLADFETCLTYATEGQAVGGIPLRNTLEGPQYHPQLHLLHSTTSKNPHVMAEMGKL 309
Query: 143 -ELRREIKANRGNGDSI--KTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRK 199
L ++A G D ++L LV + P KFKV +FDKY G TCP+NH+ Y +K
Sbjct: 310 DHLEEGLRAIEGGEDYAFANLEELFLVPNIITPPKFKVLDFDKYKGTTCPKNHLKMYCQK 489
Query: 200 MGNYKDNDSLMIHYFQDSLMEDAAEWYTSLSKDDVHTFDELATAFKSHYGFN 251
MG Y ++ L+IH FQ+SL A WYT+L VH++ +L AF Y +N
Sbjct: 490 MGAYAKDEELLIHSFQESLTGVAVTWYTNLEPSRVHSWKDLMVAFVRQYQYN 645
>BE804087
Length = 160
Score = 82.8 bits (203), Expect = 2e-15
Identities = 38/53 (71%), Positives = 44/53 (82%)
Frame = +2
Query: 2062 EAANKNIKRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEA 2114
EAANKNIK+ + KM +YKDWHEM +ALH YRT VR+STGATP+SLVYG EA
Sbjct: 2 EAANKNIKKNI*KMTVSYKDWHEMFSFALHMYRTLVRTSTGATPYSLVYGKEA 160
>BI321666
Length = 430
Score = 80.1 bits (196), Expect = 1e-14
Identities = 44/129 (34%), Positives = 71/129 (54%), Gaps = 3/129 (2%)
Frame = +2
Query: 1908 MSRKLLRAGYYWMTMEHDCYQYARKCHKCQ---IYADKIHVPPHALNVMSSPWPFSMWGI 1964
+S +L++ +Y ++ D Y +A+ C+KCQ + + +P H + + F WGI
Sbjct: 2 ISTNVLQSRFYLPSIFKDAYVHAQSCNKCQRTRSVSKRNELPLHTILEVEI---FDYWGI 172
Query: 1965 DMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKII 2024
D +G P SN +ILV +DY +KWVEA + ++V KF+K I R GVP +I
Sbjct: 173 DFVGPFPPSFSN--EYILVVVDYVSKWVEAVACQKSDAKIVIKFLKKQIFSRLGVPWVLI 346
Query: 2025 TDNGTNLNN 2033
+ G++L N
Sbjct: 347 DNGGSHLCN 373
>TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)
Length = 589
Score = 63.2 bits (152), Expect(2) = 1e-14
Identities = 42/171 (24%), Positives = 74/171 (42%)
Frame = +1
Query: 1423 REMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIK 1482
R P ++ +R F G ++ RF+ + + P+ +L++KN W ++ ++AF +K
Sbjct: 88 RMAPTLKSVGDIRSFHGLASFYRRFVPNFSTVASPLNELVKKNMAFTWGEKQEQAFALLK 267
Query: 1483 NYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRY 1542
L + P+L P + + + VL Q H I Y S+K Y
Sbjct: 268 EKLTKAPVLALPDFSKTFELECDASGVGVRAVLLQGG------HPIAYFSEKLHSATLNY 429
Query: 1543 TMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARW 1593
+K AL A + H+LV + S +KYI K+ + + A+W
Sbjct: 430 PTYDKELYALIRAPQTWEHFLVCKEFVIHSDHQSLKYIRGKSKLNKRHAKW 582
Score = 36.6 bits (83), Expect(2) = 1e-14
Identities = 12/25 (48%), Positives = 21/25 (84%)
Frame = +2
Query: 1404 GFIVSQKGIEVDPDKVRAIREMPAP 1428
GF+V + G+++DP+K++AI+E P P
Sbjct: 29 GFVVGRNGVQMDPEKIKAIQEWPPP 103
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,908,058
Number of Sequences: 63676
Number of extensions: 1415186
Number of successful extensions: 10734
Number of sequences better than 10.0: 166
Number of HSP's better than 10.0 without gapping: 8350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9552
length of query: 2244
length of database: 12,639,632
effective HSP length: 112
effective length of query: 2132
effective length of database: 5,507,920
effective search space: 11742885440
effective search space used: 11742885440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Medicago: description of AC146556.9