BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146555.16 + phase: 0
(449 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC208267 homologue to UP|Q94C37 (Q94C37) At1g05230/YUP8H12_16, p... 147 7e-36
TC218304 similar to UP|Q94C37 (Q94C37) At1g05230/YUP8H12_16, par... 140 9e-34
TC222437 weakly similar to UP|O23045 (O23045) YUP8H12.16 protein... 124 9e-29
TC218303 homologue to UP|Q94C37 (Q94C37) At1g05230/YUP8H12_16, p... 120 1e-27
TC223387 113 2e-25
BM086134 98 9e-21
BM892029 89 4e-18
TC231336 similar to UP|Q9ZTA8 (Q9ZTA8) Homeodomain protein (Frag... 72 7e-13
BE608689 similar to GP|3925363|gb| homeodomain protein {Malus x ... 70 2e-12
BG363027 69 3e-12
BM893519 similar to GP|22475197|gb homeodomain protein GhHOX2 {G... 68 1e-11
BU090220 similar to GP|22475197|gb| homeodomain protein GhHOX2 {... 66 3e-11
TC219552 similar to UP|Q8LJS8 (Q8LJS8) Homeodomain protein GhHOX... 65 8e-11
BU764492 63 3e-10
AW458675 similar to GP|1881536|gb|A A20 {Arabidopsis thaliana}, ... 62 7e-10
BG362843 similar to GP|8885530|dbj| homeodomain transcription fa... 59 6e-09
BE608681 weakly similar to GP|3925363|gb| homeodomain protein {M... 56 3e-08
TC219551 similar to UP|Q8LJS8 (Q8LJS8) Homeodomain protein GhHOX... 49 5e-06
TC221756 similar to UP|Q6Q4E9 (Q6Q4E9) PHAVOLUTA-like HD-ZIPIII ... 47 2e-05
CD402097 similar to GP|18481701|gb| OCL5 protein {Sorghum bicolo... 44 1e-04
>TC208267 homologue to UP|Q94C37 (Q94C37) At1g05230/YUP8H12_16, partial (31%)
Length = 1049
Score = 147 bits (372), Expect = 7e-36
Identities = 91/241 (37%), Positives = 129/241 (52%), Gaps = 4/241 (1%)
Frame = +2
Query: 194 GRTSFLKLADRMMRRFCANLGSTTKNPWIRLAPLPAGSADIRVMIANDMAGSTNEPIGTS 253
GR S +KLA+RM+ FCA + ++T + W L+ G+ D+RVM A P G
Sbjct: 47 GRKSMMKLAERMVISFCAGVSASTAHTWTTLSG--TGADDVRVMTRKS-ADDPGRPPGIV 217
Query: 254 LFFCTTLWLNVSPNRLFNFLRHEKSRSKWDKHSQNLSIREFACILTGKHPENRVSLLRAR 313
L T+ WL V P R+F+FLR E SR++WD S ++E A I G+ N VSLLR
Sbjct: 218 LSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVN 397
Query: 314 DKN----EIFYLQESYKDTTASYVIYCPLDEQKLTHLATGSNPDDVVAFPSGFAIIPGGL 369
N + LQES ++T S+VIY P+D + + G +PD V PSGFAI+P G
Sbjct: 398 SANSSQSNMLILQESCTNSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDG- 574
Query: 370 PRDGDKGKGNANSTANDESLLTISFHIIGKANNAASIPPESVQTIYNMVTETMAAIKDAV 429
G G T SLLT++F I+ + A + SV T+ N++ T+ IK ++
Sbjct: 575 -TTSHNGSGGIGETGPSGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASL 751
Query: 430 S 430
S
Sbjct: 752 S 754
>TC218304 similar to UP|Q94C37 (Q94C37) At1g05230/YUP8H12_16, partial (26%)
Length = 575
Score = 140 bits (354), Expect = 9e-34
Identities = 75/163 (46%), Positives = 103/163 (63%), Gaps = 1/163 (0%)
Frame = +1
Query: 76 PTRKCVFARYSKQFTHNIWAVVDVSLEDILQSPSNNFHKRPSGCLIEGMPDGNSKVIWLE 135
PTR+ F RY KQ WAVVDVSL+++ SPS +RPSGCLI+ MP+G SKVIW+E
Sbjct: 1 PTREIYFVRYCKQHGDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVE 180
Query: 136 HVEADYSKLSDLFRPLVTSALAFGATRWLTSIVRYIEWSETLKAPKL-IADAGVLIPQIG 194
HVE D + +L++ LV+S AFGA RW+ ++ R E + A + D GV+ G
Sbjct: 181 HVEVDDRGVHNLYKQLVSSGHAFGAKRWIANLDRQCERLASAMATNIPTVDVGVITNPDG 360
Query: 195 RTSFLKLADRMMRRFCANLGSTTKNPWIRLAPLPAGSADIRVM 237
R S LKLA+RM+ FCA + ++T + W L+ G+ D+RVM
Sbjct: 361 RKSMLKLAERMVISFCAGVSASTAHTWTTLS--GTGADDVRVM 483
>TC222437 weakly similar to UP|O23045 (O23045) YUP8H12.16 protein, partial
(16%)
Length = 719
Score = 124 bits (311), Expect = 9e-29
Identities = 69/204 (33%), Positives = 110/204 (53%), Gaps = 9/204 (4%)
Frame = +1
Query: 236 VMIANDMAGSTNEPIGTSLFFCTTLWLNVSPNRLFNFLRHEKSRSKWDKHSQNLSIREFA 295
V + + +P G L TT+WL P+ +FNF + E R +WD S +++E A
Sbjct: 1 VRVTVHKSSDPGQPNGVVLSAATTIWLPTPPHAVFNFFKDENKRPQWDVLSNGNAVQEVA 180
Query: 296 CILTGKHPENRVSLLRA--RDKNEIFYLQESYKDTTASYVIYCPLDEQKLTHLATGSNPD 353
I G HP N +S+LRA + LQES D+ S+V+YCP+D + +G +P
Sbjct: 181 NIANGLHPGNSISVLRAFNNSTQNMLILQESCIDSYGSFVVYCPVDLPSINLAMSGEDPS 360
Query: 354 DVVAFPSGFAIIPGGLP-RDGDKGKGNANSTANDE------SLLTISFHIIGKANNAASI 406
+ P+GF I+P G P ++GD G +++ AN SL+TI+F I+ + +A +
Sbjct: 361 YIPLLPNGFTILPDGQPDQEGDDGASTSSNNANRNIVRSGGSLVTIAFQILVSSLPSAKL 540
Query: 407 PPESVQTIYNMVTETMAAIKDAVS 430
ESV T+ N++ T+ IK ++S
Sbjct: 541 NMESVTTVNNLIGSTVQQIKSSLS 612
>TC218303 homologue to UP|Q94C37 (Q94C37) At1g05230/YUP8H12_16, partial (32%)
Length = 1230
Score = 120 bits (301), Expect = 1e-27
Identities = 72/178 (40%), Positives = 96/178 (53%), Gaps = 4/178 (2%)
Frame = +2
Query: 257 CTTLWLNVSPNRLFNFLRHEKSRSKWDKHSQNLSIREFACILTGKHPENRVSLLRARDKN 316
C WL VSP R+F FLR E SRS+WD S ++E A I G+ N VSLLR N
Sbjct: 194 CNFFWLPVSPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSAN 373
Query: 317 ----EIFYLQESYKDTTASYVIYCPLDEQKLTHLATGSNPDDVVAFPSGFAIIPGGLPRD 372
+ LQES D+T S+VIY P+D + + G +PD V PSGFAI+P G
Sbjct: 374 SSQSNMLILQESCADSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTAH 553
Query: 373 GDKGKGNANSTANDESLLTISFHIIGKANNAASIPPESVQTIYNMVTETMAAIKDAVS 430
G G T + SLLT++F I+ + A + SV T+ N++ T+ IK A+S
Sbjct: 554 G----GGIGDTGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKAALS 715
Score = 43.1 bits (100), Expect = 3e-04
Identities = 30/86 (34%), Positives = 42/86 (47%)
Frame = +3
Query: 192 QIGRTSFLKLADRMMRRFCANLGSTTKNPWIRLAPLPAGSADIRVMIANDMAGSTNEPIG 251
Q GR S LKLA+RM+ FCA + ++T + W L+ G+ D+RVM + P G
Sbjct: 9 QDGRKSMLKLAERMVISFCAGVSASTAHTWTTLS--GTGADDVRVMTRKSV-DDPGRPPG 179
Query: 252 TSLFFCTTLWLNVSPNRLFNFLRHEK 277
L T+ F FL H+K
Sbjct: 180 IVLSAATS----------FGFLCHQK 227
>TC223387
Length = 569
Score = 113 bits (282), Expect = 2e-25
Identities = 66/175 (37%), Positives = 94/175 (53%), Gaps = 4/175 (2%)
Frame = +2
Query: 185 DAGVLIPQIGRTSFLKLADRMMRRFCANLGSTTKNPWIRLAPLPAGSADIRVMIANDMAG 244
D V+ GR S +KLA+RM+ +C +G++T + W L+ G D+RVM
Sbjct: 53 DLCVITSAEGRKSMMKLAERMVMSYCTGVGASTAHAWTTLSA--TGCDDVRVMTRKS-TD 223
Query: 245 STNEPIGTSLFFCTTLWLNVSPNRLFNFLRHEKSRSKWDKHSQNLSIREFACILTGKHPE 304
P G L T+ WL V P R+F+FLR + SR++WD S ++E A I G+ P
Sbjct: 224 EPGRPPGIVLSAATSFWLPVPPKRVFHFLRDQNSRNEWDILSNGGLVQELAHIANGRDPG 403
Query: 305 NRVSLLRARDKN----EIFYLQESYKDTTASYVIYCPLDEQKLTHLATGSNPDDV 355
N VSLLR N + LQES D+T SYV+Y P+D + + +G +PD V
Sbjct: 404 NCVSLLRVNSANSSQSNMLILQESCTDSTGSYVVYAPVDIVAMNVVLSGGDPDYV 568
>BM086134
Length = 428
Score = 97.8 bits (242), Expect = 9e-21
Identities = 49/102 (48%), Positives = 68/102 (66%), Gaps = 4/102 (3%)
Frame = +1
Query: 7 GLQIEASRDKALIKISPTKLVELLMDVNQWSTAFYNIVSGARILG----SIEGSYDEKMH 62
G + EASR+ A++ ++ LVE+LMDVNQWST F IVS A L + G+Y+ +
Sbjct: 121 GFKCEASRETAVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQ 300
Query: 63 VMSAEFHLPSPVIPTRKCVFARYSKQFTHNIWAVVDVSLEDI 104
VM+AE LP+P++PTR+ F RY KQ WAVVDVSL+++
Sbjct: 301 VMTAELQLPTPLVPTRESYFVRYCKQHADGTWAVVDVSLDNL 426
>BM892029
Length = 421
Score = 89.0 bits (219), Expect = 4e-18
Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Frame = +2
Query: 185 DAGVLIPQI-GRTSFLKLADRMMRRFCANLGSTTKNPWIRLAPLPAGSADIRVMIANDMA 243
D G +IP G+ S +KLA RM+ FCA++ S+ + W L+ +G ++ V + +
Sbjct: 41 DLGGVIPSPEGKRSMMKLAQRMVTNFCASISSSAGHRWTTLSG--SGMNEVGVRVTVHKS 214
Query: 244 GSTNEPIGTSLFFCTTLWLNVSPNRLFNFLRHEKSRSKWDKHSQNLSIREFACILTGKHP 303
+P G L TT+WL + P +FNF + EK R +WD S +++E A I G HP
Sbjct: 215 SDPGQPNGVVLSAATTIWLPIPPQTVFNFFKDEKKRPQWDVLSNGNAVQEVAHIANGSHP 394
Query: 304 ENRVSLLRA 312
N +S+LRA
Sbjct: 395 GNCISVLRA 421
>TC231336 similar to UP|Q9ZTA8 (Q9ZTA8) Homeodomain protein (Fragment),
partial (19%)
Length = 869
Score = 71.6 bits (174), Expect = 7e-13
Identities = 50/142 (35%), Positives = 71/142 (49%), Gaps = 7/142 (4%)
Frame = +3
Query: 292 REFACILTGKHPENRVSLLRARDKN----EIFYLQESYKDTTASYVIYCPLDEQKLTHLA 347
+E I G+ N V LRA N + LQE++ D + S V+Y P+D Q L +
Sbjct: 3 QEMVHIAKGQGHGNCVXXLRANAVNANDSSMLILQETWMDASCSVVVYAPVDVQSLNVVM 182
Query: 348 TGSNPDDVVAFPSGFAIIPGGLPRD-GDKGKGNANSTAND--ESLLTISFHIIGKANNAA 404
+G + V PSGFAI+P G D G G ND SLLT+ F I+ + A
Sbjct: 183 SGGDSAYVALLPSGFAILPDGHCNDNGCNGTLQKGGGGNDGGGSLLTVGFQILVNSLPTA 362
Query: 405 SIPPESVQTIYNMVTETMAAIK 426
+ ESV T+ N+++ T+ IK
Sbjct: 363 KLTVESVDTVNNLISCTIQKIK 428
>BE608689 similar to GP|3925363|gb| homeodomain protein {Malus x domestica},
partial (18%)
Length = 413
Score = 70.1 bits (170), Expect = 2e-12
Identities = 45/138 (32%), Positives = 70/138 (50%)
Frame = +2
Query: 164 LTSIVRYIEWSETLKAPKLIADAGVLIPQIGRTSFLKLADRMMRRFCANLGSTTKNPWIR 223
+ ++ R E L + + +D + Q GR S LKLA RM FC+ + +++ W
Sbjct: 2 IATLQRQCECLAILMSSSISSDDHTALSQAGRRSMLKLAQRMTSNFCSGVCASSARKWDS 181
Query: 224 LAPLPAGSADIRVMIANDMAGSTNEPIGTSLFFCTTLWLNVSPNRLFNFLRHEKSRSKWD 283
L G D++VM ++ EP G L T++W+ VS RLF+FLR E+ RS+WD
Sbjct: 182 LHIGTLGD-DMKVMTRKNV-DDPGEPPGIVLSAATSVWVPVSRQRLFDFLRDERLRSEWD 355
Query: 284 KHSQNLSIREFACILTGK 301
S ++E I G+
Sbjct: 356 ILSNGGPMQEMVHIAKGQ 409
>BG363027
Length = 492
Score = 69.3 bits (168), Expect = 3e-12
Identities = 45/159 (28%), Positives = 83/159 (51%), Gaps = 7/159 (4%)
Frame = +2
Query: 278 SRSKWDKHSQNLSIREFACILTGKHPENRVSLLRARDK-NEIFYLQESYKDTTASYVIYC 336
S +WD S S++ A + GK N V++ + + K N ++ LQ+S S V+Y
Sbjct: 23 SLPQWDIMSSGGSVQSVANLAKGKDRGNVVNIQKIQSKDNSVWILQDSCTSAYESMVVYA 202
Query: 337 PLDEQKLTHLATGSNPDDVVAFPSGFAIIPGGLPRDGDKGKGNANSTANDE------SLL 390
P++ + + TG + ++ PSGF+I+P DG +G+ S+ +E SL
Sbjct: 203 PVEFAGIQSVLTGCDSSNLAILPSGFSILP-----DGIEGRPLVISSRQEEKYTEGGSLF 367
Query: 391 TISFHIIGKANNAASIPPESVQTIYNMVTETMAAIKDAV 429
T++F I+ + + ESV+++ N+V+ T+ IK ++
Sbjct: 368 TMAFQILVNPSPTVKLTTESVESVNNLVSCTLRNIKTSL 484
>BM893519 similar to GP|22475197|gb homeodomain protein GhHOX2 {Gossypium
hirsutum}, partial (13%)
Length = 421
Score = 67.8 bits (164), Expect = 1e-11
Identities = 42/114 (36%), Positives = 61/114 (52%), Gaps = 8/114 (7%)
Frame = +3
Query: 82 FARYSKQFT-HNIWAVVDVSLEDILQSPSNNFH-------KRPSGCLIEGMPDGNSKVIW 133
F RY +Q WA+VD ++ Q NFH +R SGC+I+ MP+G S+V W
Sbjct: 3 FLRYCQQNAMEGTWAIVDFPVDSFHQ----NFHPSYPRYCRRSSGCVIQDMPNGYSRVTW 170
Query: 134 LEHVEADYSKLSDLFRPLVTSALAFGATRWLTSIVRYIEWSETLKAPKLIADAG 187
+EH + + + +F V S +AFGA RWL + R E +L A + I+D G
Sbjct: 171 VEHAKVEEKPVHQIFCNYVYSGMAFGAQRWLGVLQRQCERVASLMA-RNISDLG 329
>BU090220 similar to GP|22475197|gb| homeodomain protein GhHOX2 {Gossypium
hirsutum}, partial (11%)
Length = 267
Score = 66.2 bits (160), Expect = 3e-11
Identities = 35/88 (39%), Positives = 53/88 (59%)
Frame = +2
Query: 114 KRPSGCLIEGMPDGNSKVIWLEHVEADYSKLSDLFRPLVTSALAFGATRWLTSIVRYIEW 173
+RPSGC+I+ MP+G S+V W+EH + + + +F V S +AFGA RWL + R E
Sbjct: 5 RRPSGCVIQDMPNGYSRVTWVEHAKVEEKPVHQIFCNYVYSGMAFGAQRWLGVLQRQCER 184
Query: 174 SETLKAPKLIADAGVLIPQIGRTSFLKL 201
+L A + I+D GV+ R + +KL
Sbjct: 185 VASLMA-RNISDLGVIPIADARKNLMKL 265
>TC219552 similar to UP|Q8LJS8 (Q8LJS8) Homeodomain protein GhHOX1, partial
(20%)
Length = 804
Score = 64.7 bits (156), Expect = 8e-11
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 2/150 (1%)
Frame = +1
Query: 282 WDKHSQNLSIREFACILTGKHPENRVSLLRARDK-NEIFYLQESYKDTTASYVIYCPLDE 340
WD S +++ A + G+ N V++ + K N ++ LQ+SY + S V Y +D
Sbjct: 40 WDIMSSGGTVQSIANLAKGQDRGNAVAIQTIKSKENSVWILQDSYTNPYESMVAYASVDI 219
Query: 341 QKLTHLATGSNPDDVVAFPSGFAIIPGGL-PRDGDKGKGNANSTANDESLLTISFHIIGK 399
+ + TG + ++ PSGF+IIP GL R SL T++F I+
Sbjct: 220 TGIQSVMTGCDSSNLAILPSGFSIIPDGLESRPLVISSRQEEKNTEGGSLFTMAFQILTN 399
Query: 400 ANNAASIPPESVQTIYNMVTETMAAIKDAV 429
A+ A + ESV ++ +V+ T+ I+ ++
Sbjct: 400 ASPTAKLTLESVDSVNTLVSCTLRNIRTSL 489
>BU764492
Length = 428
Score = 62.8 bits (151), Expect = 3e-10
Identities = 48/137 (35%), Positives = 68/137 (49%), Gaps = 14/137 (10%)
Frame = +3
Query: 291 IREFACILTGKHPENRVSLLRAR----DKNEIFYLQESYKDTTASYVIYCPLDEQKLTHL 346
++E A I G+ N VSLLRA +++ + LQE+ D S V+Y P+D L +
Sbjct: 27 MQEMAHIAKGQDHGNAVSLLRASAINSNQSSMLILQETCIDAAGSLVVYAPVDIPVLYVV 206
Query: 347 ATGSNPDDVVAFPSGFAIIPGGLPRDGDKGKGNA-NSTAN---------DESLLTISFHI 396
G + V PSGFAI+P G G +G N ST N SLLT++F I
Sbjct: 207 MNGGDSAYVALLPSGFAIVPDG---PGSRGPPNGPTSTTNGGDNGVTRVSGSLLTVAFQI 377
Query: 397 IGKANNAASIPPESVQT 413
+ + A + ESV+T
Sbjct: 378 LVNSLPTAKLTVESVET 428
>AW458675 similar to GP|1881536|gb|A A20 {Arabidopsis thaliana}, partial
(11%)
Length = 411
Score = 61.6 bits (148), Expect = 7e-10
Identities = 34/88 (38%), Positives = 49/88 (55%)
Frame = +2
Query: 194 GRTSFLKLADRMMRRFCANLGSTTKNPWIRLAPLPAGSADIRVMIANDMAGSTNEPIGTS 253
GR S +KLA+RM+ F +G++T N W PLP ++RVM + P G
Sbjct: 14 GRKSMMKLAERMVLSFSTGVGASTANAW---TPLPLDLENVRVMTRKSV-DDPGRPSGIV 181
Query: 254 LFFCTTLWLNVSPNRLFNFLRHEKSRSK 281
L T+LWL V R+F+FLR E +R++
Sbjct: 182 LSAATSLWLPVPARRVFDFLRSENTRNQ 265
>BG362843 similar to GP|8885530|dbj| homeodomain transcription factor-like
{Arabidopsis thaliana}, partial (10%)
Length = 466
Score = 58.5 bits (140), Expect = 6e-09
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Frame = +1
Query: 307 VSLLRARDKNE--IFYLQESYKDTTASYVIYCPLDEQKLTHLATGSNPDDVVAFPSGFAI 364
V+ L+A + N+ + LQE++ D + S V+Y P+D Q L + +G + V PSGFAI
Sbjct: 154 VTYLQAVNANDSSMLILQETWMDASCSVVVYAPVDVQSLNVVMSGGDSAYVALLPSGFAI 333
Query: 365 IPGGLPRD----GDKGKGNANSTANDESLLTISFHII 397
+P G D G KG + + SLLT+ F I+
Sbjct: 334 LPDGHCNDNGCNGSLQKGRGSDYGSGGSLLTVGFQIL 444
>BE608681 weakly similar to GP|3925363|gb| homeodomain protein {Malus x
domestica}, partial (19%)
Length = 475
Score = 56.2 bits (134), Expect = 3e-08
Identities = 40/138 (28%), Positives = 64/138 (45%)
Frame = +2
Query: 184 ADAGVLIPQIGRTSFLKLADRMMRRFCANLGSTTKNPWIRLAPLPAGSADIRVMIANDMA 243
+D + Q G S LKLA M +C+ + +++ W L G D++VM ++
Sbjct: 50 SDDHTTLSQAGGKSMLKLAQLMTSNYCSGVSASSALKWDNLHISTLGD-DMKVMTRKNV- 223
Query: 244 GSTNEPIGTSLFFCTTLWLNVSPNRLFNFLRHEKSRSKWDKHSQNLSIREFACILTGKHP 303
EP G L T++W+ V+ RL N L E RS+WD + + I+ +
Sbjct: 224 DDPGEPTGIVLTAATSVWVPVTRMRLLNSLLDEHLRSEWDILFNGGPMHDMVHIVR*QGH 403
Query: 304 ENRVSLLRARDKNEIFYL 321
N VS+LR ++ YL
Sbjct: 404 GNCVSILRLMPLRQLIYL 457
>TC219551 similar to UP|Q8LJS8 (Q8LJS8) Homeodomain protein GhHOX1, partial
(15%)
Length = 671
Score = 48.9 bits (115), Expect = 5e-06
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Frame = +1
Query: 318 IFYLQESYKDTTASYVIYCPLDEQKLTHLATGSNPDDVVAFPSGFAIIPGGL-PRDGDKG 376
+ L +S S V+Y +D + TG + ++ P GF+IIP GL R
Sbjct: 7 VXILXDSXXXXXESMVVYASVDITXTQSVMTGCDSSNLAILPXGFSIIPDGLESRPLVIS 186
Query: 377 KGNANSTANDESLLTISFHIIGKANNAASIPPESVQTIYNMVTETMAAIKDAV 429
SL T++F I+ A+ AA + ESV ++ +V+ T+ I+ ++
Sbjct: 187 SRQEEKNTEGGSLFTMAFQILTNASPAAKLTMESVDSVNTLVSCTLRNIRTSL 345
>TC221756 similar to UP|Q6Q4E9 (Q6Q4E9) PHAVOLUTA-like HD-ZIPIII protein,
partial (28%)
Length = 745
Score = 47.0 bits (110), Expect = 2e-05
Identities = 41/166 (24%), Positives = 70/166 (41%), Gaps = 7/166 (4%)
Frame = +2
Query: 12 ASRDKALIKISPTKLVELLMDVNQWSTAFYNIVSGARILGSIEGSYDEKMHVMSAEFHLP 71
A+R L+ + PTK+ E+L D W Y +L I + +M + + P
Sbjct: 152 AARACGLVSLEPTKVAEILKDRPSW----YRDCRCLNVLSVIPTGNGGTIELMYMQTYAP 319
Query: 72 SPVIPTRKCVFARYSKQFTHNIWAVVDVSLEDILQSPS----NNFHKR---PSGCLIEGM 124
+ + R RY+ + + SL P+ +NF + PSG LI
Sbjct: 320 TTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPTGPAASNFIRAEMLPSGYLIRSC 499
Query: 125 PDGNSKVIWLEHVEADYSKLSDLFRPLVTSALAFGATRWLTSIVRY 170
G S + ++HV+ D + ++ RPL S F A + T+ +R+
Sbjct: 500 EGGGSIIHIVDHVDLDVWSVPEVLRPLYESP-KFLAXKLTTAALRH 634
>CD402097 similar to GP|18481701|gb| OCL5 protein {Sorghum bicolor}, partial
(9%)
Length = 665
Score = 44.3 bits (103), Expect = 1e-04
Identities = 28/79 (35%), Positives = 41/79 (51%)
Frame = -3
Query: 351 NPDDVVAFPSGFAIIPGGLPRDGDKGKGNANSTANDESLLTISFHIIGKANNAASIPPES 410
+PD V PSGFAI+P G P G + + SLLT+ F I+ + A + S
Sbjct: 660 DPDYVALLPSGFAILPDGPPA---LNGGPKHEVGSGGSLLTVGFQILVDSAPTAKLSLGS 490
Query: 411 VQTIYNMVTETMAAIKDAV 429
V T+ +++ T+ IK AV
Sbjct: 489 VATVNSLIKCTVERIKVAV 433
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,561,576
Number of Sequences: 63676
Number of extensions: 293022
Number of successful extensions: 1411
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 1389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of query: 449
length of database: 12,639,632
effective HSP length: 100
effective length of query: 349
effective length of database: 6,272,032
effective search space: 2188939168
effective search space used: 2188939168
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC146555.16