BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146554.3 - phase: 0
(247 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204387 UP|Q8LJW0 (Q8LJW0) 40S ribosomal S4 protein, complete 467 e-132
TC214963 UP|Q8LJW0 (Q8LJW0) 40S ribosomal S4 protein, complete 466 e-132
TC205291 homologue to UP|Q8LJW0 (Q8LJW0) 40S ribosomal S4 protei... 321 e-121
TC205292 homologue to UP|Q8LJW0 (Q8LJW0) 40S ribosomal S4 protei... 367 e-102
TC204390 UP|Q8LJW0 (Q8LJW0) 40S ribosomal S4 protein, partial (72%) 355 1e-98
TC212961 similar to UP|Q95V34 (Q95V34) Ribosomal protein S4, par... 331 2e-91
TC204389 UP|Q8LJW0 (Q8LJW0) 40S ribosomal S4 protein, partial (51%) 237 3e-63
TC214962 UP|Q8LJW0 (Q8LJW0) 40S ribosomal S4 protein, partial (51%) 235 2e-62
CA852594 weakly similar to EGAD|53285|YHR 40s ribosomal protein ... 196 2e-56
TC204388 UP|Q8LJW0 (Q8LJW0) 40S ribosomal S4 protein, partial (36%) 159 1e-39
BG550864 similar to GP|22138108|gb 40S ribosomal S4 protein {Gly... 145 1e-35
BE211516 130 4e-31
BI788139 GP|22138108|gb 40S ribosomal S4 protein {Glycine max}, ... 120 7e-28
AI794958 similar to SP|O81363|RS4_P 40S ribosomal protein S4. [A... 110 8e-25
CD410031 homologue to GP|22138108|gb| 40S ribosomal S4 protein {... 71 4e-13
AW832247 weakly similar to GP|22138108|gb| 40S ribosomal S4 prot... 67 6e-12
AW348483 54 7e-08
AI496526 38 0.005
BE607715 similar to GP|28416577|gb At1g12390 {Arabidopsis thalia... 28 3.0
TC227600 similar to UP|Q84W04 (Q84W04) At1g12390, partial (93%) 28 3.0
>TC204387 UP|Q8LJW0 (Q8LJW0) 40S ribosomal S4 protein, complete
Length = 1196
Score = 467 bits (1202), Expect = e-132
Identities = 227/246 (92%), Positives = 238/246 (96%)
Frame = +2
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT
Sbjct: 143 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 322
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY
Sbjct: 323 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 502
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
LNTYDGRTIRYPDPLI+ANDTIKLDLE+NKI DFIKFDVGNVVMVTGGRNRGRVG IKNR
Sbjct: 503 LNTYDGRTIRYPDPLIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNR 682
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
+KH G+FETIHVQDA GHEFATR+GNVFTIG+G KPW+SLPKG+GIKL++IEEARKR+AA
Sbjct: 683 EKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWISLPKGKGIKLSIIEEARKRIAA 862
Query: 241 SQQAAA 246
Q AA
Sbjct: 863 QQATAA 880
>TC214963 UP|Q8LJW0 (Q8LJW0) 40S ribosomal S4 protein, complete
Length = 1197
Score = 466 bits (1199), Expect = e-132
Identities = 226/246 (91%), Positives = 238/246 (95%)
Frame = +1
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT
Sbjct: 160 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 339
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY
Sbjct: 340 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 519
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
LNTYDGRTIRYPDPLI+ANDTIKLDLE+NKI DFIKFDVGNVVMVTGGRNRGRVG IKNR
Sbjct: 520 LNTYDGRTIRYPDPLIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNR 699
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
+KH G+FETIHVQD+ GHEFATR+GNVFTIG+G KPW+SLPKG+GIKL++IEEARKR+AA
Sbjct: 700 EKHKGSFETIHVQDSTGHEFATRMGNVFTIGKGTKPWISLPKGKGIKLSIIEEARKRIAA 879
Query: 241 SQQAAA 246
Q AA
Sbjct: 880 QQATAA 897
>TC205291 homologue to UP|Q8LJW0 (Q8LJW0) 40S ribosomal S4 protein, partial
(97%)
Length = 1136
Score = 321 bits (822), Expect(2) = e-121
Identities = 157/160 (98%), Positives = 159/160 (99%)
Frame = +2
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT
Sbjct: 116 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 295
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRD+E+KFKLCKVRSVQFGQKGIPY
Sbjct: 296 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKFKLCKVRSVQFGQKGIPY 475
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVG 160
LNTYDGRTIRYPDPLIKANDTIKLDLE NKITDFIKFDVG
Sbjct: 476 LNTYDGRTIRYPDPLIKANDTIKLDLESNKITDFIKFDVG 595
Score = 130 bits (327), Expect(2) = e-121
Identities = 61/87 (70%), Positives = 72/87 (82%)
Frame = +1
Query: 160 GNVVMVTGGRNRGRVGFIKNRKKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVS 219
G +V RNR RVG IKNR+KH G+FETIHVQDA GHEFATR+GNVF IG+G KPWVS
Sbjct: 595 GMLVWSQAERNRSRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFIIGKGTKPWVS 774
Query: 220 LPKGRGIKLTVIEEARKRMAASQQAAA 246
LPKG+GIKL++IEEARKR+AA ++ A
Sbjct: 775 LPKGKGIKLSIIEEARKRLAAQKETVA 855
>TC205292 homologue to UP|Q8LJW0 (Q8LJW0) 40S ribosomal S4 protein, partial
(75%)
Length = 749
Score = 367 bits (943), Expect = e-102
Identities = 177/199 (88%), Positives = 188/199 (93%)
Frame = +2
Query: 48 MQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCK 107
MQRHVLVDGKVRTDKTY AGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRD+E+KFKLCK
Sbjct: 2 MQRHVLVDGKVRTDKTYXAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKFKLCK 181
Query: 108 VRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTG 167
VRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLE NKITDFIKFDVGNVVMVTG
Sbjct: 182 VRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKITDFIKFDVGNVVMVTG 361
Query: 168 GRNRGRVGFIKNRKKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIK 227
GRNRGRVG IKNR+KH G+FETIHVQDA GHEFATR+GNVF IG+G KPWVSLPKG+GIK
Sbjct: 362 GRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFIIGKGTKPWVSLPKGKGIK 541
Query: 228 LTVIEEARKRMAASQQAAA 246
L++IEEARKR+AA + A
Sbjct: 542 LSIIEEARKRLAAQNETVA 598
>TC204390 UP|Q8LJW0 (Q8LJW0) 40S ribosomal S4 protein, partial (72%)
Length = 905
Score = 355 bits (911), Expect = 1e-98
Identities = 170/189 (89%), Positives = 181/189 (94%)
Frame = +1
Query: 58 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKG 117
VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKG
Sbjct: 1 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKG 180
Query: 118 IPYLNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFI 177
IPYLNTYDGRTIRYPDPLI+ANDTIKLDLE+NKI DFIKFDVGNVVMVTGGRNRGRVG I
Sbjct: 181 IPYLNTYDGRTIRYPDPLIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVI 360
Query: 178 KNRKKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKR 237
KNR+KH G+FETIHVQDA GHEFATR+GNVFTIG+G KPW+SLPKG+GIKL++IEEARKR
Sbjct: 361 KNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWISLPKGKGIKLSIIEEARKR 540
Query: 238 MAASQQAAA 246
+AA Q AA
Sbjct: 541 IAAQQATAA 567
>TC212961 similar to UP|Q95V34 (Q95V34) Ribosomal protein S4, partial (97%)
Length = 781
Score = 331 bits (848), Expect = 2e-91
Identities = 155/240 (64%), Positives = 194/240 (80%)
Frame = +3
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKLGG FAP+PS+GPHK RE LPL++ LRNRLKYALT EV I+MQR + VDGKVRT
Sbjct: 48 MLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNCEVKKIVMQRLIKVDGKVRT 227
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
D YPAGFMDV+SI KTNENFRL+YD KGRF +H + DEAK+KLCKV+ VQ G +GIP+
Sbjct: 228 DPNYPAGFMDVISIEKTNENFRLIYDVKGRFTIHRITADEAKYKLCKVKRVQVGPRGIPF 407
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
L ++DGRTIRYPDP IK NDTI+LD+ +KI D+I FD GN+ M+TGGRN GRVG + NR
Sbjct: 408 LVSHDGRTIRYPDPAIKVNDTIQLDISTSKIMDYISFDSGNLCMITGGRNLGRVGTVVNR 587
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
++H G+F+ +H++D+ GH FATRL NVF IG+G K +V LPKG+G+KL++ + KR+AA
Sbjct: 588 ERHPGSFDIVHIKDSQGHVFATRLHNVFIIGKGTKAYVXLPKGKGVKLSISKXRDKRLAA 767
>TC204389 UP|Q8LJW0 (Q8LJW0) 40S ribosomal S4 protein, partial (51%)
Length = 473
Score = 237 bits (605), Expect = 3e-63
Identities = 116/117 (99%), Positives = 117/117 (99%)
Frame = +3
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT
Sbjct: 123 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 302
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKG 117
DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RDDEAKFKLCKVRSVQFGQKG
Sbjct: 303 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDDEAKFKLCKVRSVQFGQKG 473
>TC214962 UP|Q8LJW0 (Q8LJW0) 40S ribosomal S4 protein, partial (51%)
Length = 433
Score = 235 bits (599), Expect = 2e-62
Identities = 115/116 (99%), Positives = 116/116 (99%)
Frame = +2
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT
Sbjct: 86 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 265
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQK 116
DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RDDEAKFKLCKVRSVQFGQK
Sbjct: 266 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDDEAKFKLCKVRSVQFGQK 433
>CA852594 weakly similar to EGAD|53285|YHR 40s ribosomal protein s4
{Saccharomyces cerevisiae}, partial (71%)
Length = 640
Score = 196 bits (498), Expect(2) = 2e-56
Identities = 96/150 (64%), Positives = 111/150 (74%)
Frame = +1
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDK+GG FAP+PSSGPHK RE L L ++L NRLKYA T +EV I+MQR V GK RT
Sbjct: 112 MLDKMGGVFAPRPSSGPHKLREXLXLXILLTNRLKYAXTRKEVTMIMMQRLVXXXGKTRT 291
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
D T PAGFMD + I TNE FRLLYDT GRF + + E+K+KL KV+ + G KGIPY
Sbjct: 292 DXTXPAGFMDXIXIEXTNETFRLLYDTXGRFAVQRITPXESKYKLLKVKKIYTGTKGIPY 471
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNK 150
L+T+DGRTIRYPDP IK NDTIK DLE K
Sbjct: 472 LSTHDGRTIRYPDPAIKINDTIKYDLESGK 561
Score = 40.4 bits (93), Expect(2) = 2e-56
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 150 KITDFIKFDVGNVVMVTGGRNRGRVG 175
KITD F++GN+VM+TGG N GRVG
Sbjct: 560 KITDIAPFELGNLVMITGGANLGRVG 637
>TC204388 UP|Q8LJW0 (Q8LJW0) 40S ribosomal S4 protein, partial (36%)
Length = 378
Score = 159 bits (401), Expect = 1e-39
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = +1
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT
Sbjct: 145 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 324
Query: 61 DKTYPAGFMDVVSIPKTN 78
DKTYPAGFMDVVSIPKTN
Sbjct: 325 DKTYPAGFMDVVSIPKTN 378
>BG550864 similar to GP|22138108|gb 40S ribosomal S4 protein {Glycine max},
partial (43%)
Length = 378
Score = 145 bits (367), Expect = 1e-35
Identities = 73/94 (77%), Positives = 76/94 (80%)
Frame = +2
Query: 6 GGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYP 65
G + SGPH RECLPLILILR RLKYALTYREVIAILMQRHVLVD K RTDKTYP
Sbjct: 95 GWCICAQTGSGPHIFRECLPLILILRGRLKYALTYREVIAILMQRHVLVDKKKRTDKTYP 274
Query: 66 AGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDD 99
AGFMDVVSIPKTNEN RL++DTKGR R H R D
Sbjct: 275 AGFMDVVSIPKTNENXRLVFDTKGRXRXHXXRXD 376
Score = 31.2 bits (69), Expect = 0.46
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 1 MLDKLGGAFAPKP 13
MLDKLGGAFAPKP
Sbjct: 81 MLDKLGGAFAPKP 119
>BE211516
Length = 439
Score = 130 bits (328), Expect = 4e-31
Identities = 64/64 (100%), Positives = 64/64 (100%)
Frame = +1
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT
Sbjct: 247 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 426
Query: 61 DKTY 64
DKTY
Sbjct: 427 DKTY 438
>BI788139 GP|22138108|gb 40S ribosomal S4 protein {Glycine max}, partial
(43%)
Length = 421
Score = 120 bits (300), Expect = 7e-28
Identities = 59/59 (100%), Positives = 59/59 (100%)
Frame = +1
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVR 59
MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVR
Sbjct: 136 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVR 312
Score = 71.6 bits (174), Expect = 3e-13
Identities = 30/37 (81%), Positives = 35/37 (94%)
Frame = +3
Query: 193 QDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLT 229
QDA GHEFATR+GNVFTIG+G KPW+SLPKG+GIKL+
Sbjct: 309 QDATGHEFATRMGNVFTIGKGTKPWISLPKGKGIKLS 419
>AI794958 similar to SP|O81363|RS4_P 40S ribosomal protein S4. [Apricot]
{Prunus armeniaca}, partial (28%)
Length = 229
Score = 110 bits (274), Expect = 8e-25
Identities = 56/75 (74%), Positives = 59/75 (78%)
Frame = +2
Query: 146 LEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNRKKHMGTFETIHVQDAAGHEFATRLG 205
LE NK T FIK DVGNVVMVTGGRN GRV IKNR KH G+FETIHVQ A GHEFATR+G
Sbjct: 5 LESNKTTQFIKSDVGNVVMVTGGRNTGRVRDIKNR*KHKGSFETIHVQYATGHEFATRMG 184
Query: 206 NVFTIGRGPKPWVSL 220
NVF IG+G K V L
Sbjct: 185 NVFIIGKGTKTLVCL 229
>CD410031 homologue to GP|22138108|gb| 40S ribosomal S4 protein {Glycine
max}, partial (16%)
Length = 645
Score = 71.2 bits (173), Expect = 4e-13
Identities = 31/43 (72%), Positives = 38/43 (88%)
Frame = -1
Query: 204 LGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAASQQAAA 246
+GNVFTIG+G KPW+SLPKG+GIKL++IEEARKR+AA Q A
Sbjct: 645 MGNVFTIGKGTKPWISLPKGKGIKLSIIEEARKRIAAQQATTA 517
>AW832247 weakly similar to GP|22138108|gb| 40S ribosomal S4 protein {Glycine
max}, partial (35%)
Length = 283
Score = 67.4 bits (163), Expect = 6e-12
Identities = 40/92 (43%), Positives = 55/92 (59%)
Frame = -1
Query: 149 NKITDFIKFDVGNVVMVTGGRNRGRVGFIKNRKKHMGTFETIHVQDAAGHEFATRLGNVF 208
NK I +VG VM+TG NR RV I +R KH +F+TIHVQD+ +FATR+ VF
Sbjct: 283 NKTVLLILSNVGQGVMLTGQINRTRVVVI*SRTKHSVSFDTIHVQDSTALDFATRMARVF 104
Query: 209 TIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
G +P +SLP + +L+ + AR +AA
Sbjct: 103 CFG*ATEPCLSLPCPKVSELSFLSVARIGIAA 8
>AW348483
Length = 257
Score = 53.9 bits (128), Expect = 7e-08
Identities = 35/82 (42%), Positives = 47/82 (56%)
Frame = -1
Query: 159 VGNVVMVTGGRNRGRVGFIKNRKKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWV 218
VGN MVTGG + RVG +K +H +IHVQ A+ ++ G+VF R PWV
Sbjct: 254 VGNAGMVTGGSYKVRVGVVKLIDQHNLCEHSIHVQYASVLGGSSWSGHVFLSDRRSIPWV 75
Query: 219 SLPKGRGIKLTVIEEARKRMAA 240
S PK G+ ++ I +A KR AA
Sbjct: 74 SHPKD*GVLVSSIVKAIKRHAA 9
>AI496526
Length = 127
Score = 37.7 bits (86), Expect = 0.005
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = +2
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILR 31
MLD+L + PK SS PHK+ +CLPLI I R
Sbjct: 32 MLDQLSSSCYPKTSS*PHKTTDCLPLIHISR 124
>BE607715 similar to GP|28416577|gb At1g12390 {Arabidopsis thaliana}, partial
(75%)
Length = 433
Score = 28.5 bits (62), Expect = 3.0
Identities = 11/41 (26%), Positives = 24/41 (57%)
Frame = -3
Query: 25 PLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYP 65
PL+L LR +++Y ++ ++ +Q H++V+ + YP
Sbjct: 335 PLLLFLREQVEYLCDINQMFSLSVQSHIVVEVRSTDQ*HYP 213
>TC227600 similar to UP|Q84W04 (Q84W04) At1g12390, partial (93%)
Length = 1021
Score = 28.5 bits (62), Expect = 3.0
Identities = 11/41 (26%), Positives = 24/41 (57%)
Frame = -2
Query: 25 PLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYP 65
PL+L LR +++Y ++ ++ +Q H++V+ + YP
Sbjct: 642 PLLLFLREQVEYLCDINQMFSLSVQSHIVVEVRSTDQ*HYP 520
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.140 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,380,639
Number of Sequences: 63676
Number of extensions: 113620
Number of successful extensions: 522
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of query: 247
length of database: 12,639,632
effective HSP length: 95
effective length of query: 152
effective length of database: 6,590,412
effective search space: 1001742624
effective search space used: 1001742624
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146554.3