BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146554.10 + phase: 2 /partial
(83 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC233392 50 2e-07
CO984521 49 6e-07
TC231841 47 1e-06
BF595917 47 2e-06
CO979823 47 2e-06
CA851073 47 2e-06
TC231922 46 3e-06
TC222857 46 4e-06
BE660043 45 6e-06
TC222789 45 6e-06
TC233777 45 8e-06
TC222557 44 1e-05
TC221865 44 1e-05
TC213899 44 1e-05
TC233056 43 2e-05
TC233956 43 2e-05
BE610670 43 2e-05
CF920672 42 5e-05
BU765000 42 5e-05
TC223713 41 9e-05
>TC233392
Length = 1145
Score = 50.1 bits (118), Expect = 2e-07
Identities = 31/80 (38%), Positives = 44/80 (54%), Gaps = 2/80 (2%)
Frame = -1
Query: 1 TGYDLLTA--DDNNTDVAVSELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDA 58
+ Y LL + + D A+ +L W +P K SI AW L+R+RLPTK+NL R + D+
Sbjct: 608 SAYKLLQGHLEGEDQDGALQDL-WKLKIPAKASIFAWRLIRDRLPTKSNLHRRQVVLEDS 432
Query: 59 QLCVSGCWAVETAQHLFVSC 78
LC E A H+F+ C
Sbjct: 431 -LCPFCRIREEDASHIFLEC 375
>CO984521
Length = 716
Score = 48.5 bits (114), Expect = 6e-07
Identities = 26/58 (44%), Positives = 34/58 (57%)
Frame = -2
Query: 21 IWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVSC 78
+W VPLKV+I AW L++++LPTKANL + + LC ETA HLF C
Sbjct: 535 LWKLRVPLKVAIFAWRLIQDKLPTKANL-RKKRVELQEYLCPLCRSVEETASHLFFHC 365
>TC231841
Length = 791
Score = 47.4 bits (111), Expect = 1e-06
Identities = 26/62 (41%), Positives = 36/62 (57%)
Frame = +3
Query: 17 VSELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFV 76
V E +W +P K++I AW L+R+RLPT++NL R + D C A E+A HLF
Sbjct: 162 VFEELWKLKLPSKITIFAWRLIRDRLPTRSNL-RRKQIEVDDPRCPFCRSAEESAAHLFF 338
Query: 77 SC 78
C
Sbjct: 339 HC 344
>BF595917
Length = 419
Score = 47.0 bits (110), Expect = 2e-06
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Frame = +2
Query: 3 YDLLTAD--DNNTDVAVSELIWHRHVPLKVSILAWCLLRNRLPTKANLVAR 51
Y L+T + + D A EL W+ VP+KV++ AW LLR+RLPTK NL R
Sbjct: 38 YKLMTGEAVEGERDRAFEEL-WNLKVPIKVAVFAWRLLRDRLPTKVNLYRR 187
>CO979823
Length = 853
Score = 47.0 bits (110), Expect = 2e-06
Identities = 28/73 (38%), Positives = 39/73 (53%)
Frame = -2
Query: 6 LTADDNNTDVAVSELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGC 65
LT + + D A IW +P K ++ AW L+R+RLPTK+NL R + D +C
Sbjct: 627 LTEEIQDADFAE---IWKLKIPTKAAVFAWRLVRDRLPTKSNLRRRQVMVQD-MVCPLCN 460
Query: 66 WAVETAQHLFVSC 78
E A HLF +C
Sbjct: 459 NIEEGAAHLFFNC 421
>CA851073
Length = 633
Score = 47.0 bits (110), Expect = 2e-06
Identities = 21/74 (28%), Positives = 43/74 (57%)
Frame = +1
Query: 5 LLTADDNNTDVAVSELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSG 64
L+T + + ++ + + IW +P + ++ +W L+++RLPT+ NL+ R + + + G
Sbjct: 91 LMTCNRHVSEANIFKTIWKLKIPPRAAVFSWRLIKDRLPTRHNLLRRNVSIQENECPLCG 270
Query: 65 CWAVETAQHLFVSC 78
+ E A HLF +C
Sbjct: 271 -YEQEEADHLFFNC 309
>TC231922
Length = 803
Score = 46.2 bits (108), Expect = 3e-06
Identities = 21/62 (33%), Positives = 33/62 (52%)
Frame = -3
Query: 17 VSELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFV 76
+ +++WH +P + ++ +W L +RLPT+ NL R D + GC E A HLF
Sbjct: 345 IFQILWHLKIPPRAAVFSWRLFLDRLPTRGNLSRRSIPIQDIMCPLCGC-QHEEAGHLFF 169
Query: 77 SC 78
C
Sbjct: 168 HC 163
>TC222857
Length = 657
Score = 45.8 bits (107), Expect = 4e-06
Identities = 31/72 (43%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Frame = -3
Query: 14 DVAVSEL------IWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWA 67
+VAV L +W +P K + AW LL +RLPTKANL AR D L C
Sbjct: 652 EVAVDNLHDCFKDLWKIKIPSKFLMFAWRLLWDRLPTKANLRARQVQISD--LTCPFCRR 479
Query: 68 V-ETAQHLFVSC 78
V ETA H+F+ C
Sbjct: 478 VEETASHMFIHC 443
>BE660043
Length = 714
Score = 45.1 bits (105), Expect = 6e-06
Identities = 28/71 (39%), Positives = 38/71 (53%)
Frame = -2
Query: 8 ADDNNTDVAVSELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWA 67
+++ N D +L W +P K SI A L+R+RLPTK+N+ R D+ LC
Sbjct: 551 SEEGNMDDIFKDL-WKLKIPAKASIFAGRLIRDRLPTKSNMRKRQIDINDS-LCPFCSIK 378
Query: 68 VETAQHLFVSC 78
ETA HLF C
Sbjct: 377 EETASHLFFDC 345
>TC222789
Length = 954
Score = 45.1 bits (105), Expect = 6e-06
Identities = 26/60 (43%), Positives = 31/60 (51%)
Frame = +2
Query: 19 ELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVSC 78
E +W VP+K + AW LLR+RLPTK NL R D + C E A HLF C
Sbjct: 356 EKLWKLKVPIKYEVFAWRLLRDRLPTKVNLHRRQIQVMD-RSCPFCRNVEEDAGHLFFHC 532
>TC233777
Length = 503
Score = 44.7 bits (104), Expect = 8e-06
Identities = 24/53 (45%), Positives = 29/53 (54%)
Frame = +2
Query: 26 VPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVSC 78
VP K+S+ AW LLRNRLPT+ NL R D C + E HLF+ C
Sbjct: 23 VPSKISVFAWRLLRNRLPTRTNLHRRQLQIIDMSCPFCRC-SEEDEAHLFIHC 178
>TC222557
Length = 1002
Score = 44.3 bits (103), Expect = 1e-05
Identities = 23/61 (37%), Positives = 33/61 (53%)
Frame = +1
Query: 19 ELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVSC 78
E +W +PLK + AW L++ R+PTK NL R + + +C E A HLF +C
Sbjct: 433 EDLWQLKIPLKATTFAWRLIKERIPTKGNLWRR-RVQLNNLMCPFCNRQEEEASHLFFNC 609
Query: 79 P 79
P
Sbjct: 610 P 612
>TC221865
Length = 1045
Score = 43.9 bits (102), Expect = 1e-05
Identities = 29/67 (43%), Positives = 37/67 (54%)
Frame = -3
Query: 12 NTDVAVSELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETA 71
NTD A E IW +P K +I A L+++RLPTK NL R + + LC+ E A
Sbjct: 581 NTDPAFEE-IWKLKIPAKAAIFA*RLVKDRLPTKNNL-RRRQVQLNGTLCLFCRNYEEEA 408
Query: 72 QHLFVSC 78
HLF SC
Sbjct: 407 SHLFFSC 387
>TC213899
Length = 497
Score = 43.9 bits (102), Expect = 1e-05
Identities = 30/78 (38%), Positives = 39/78 (49%), Gaps = 2/78 (2%)
Frame = +3
Query: 3 YDLLTAD--DNNTDVAVSELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQL 60
Y +L D N D A EL W VP K++ AW LL++RLPT+ NL R ++
Sbjct: 12 YQMLREDISQENQDGAFEEL-WKLKVP*KIAAFAWRLLKDRLPTRINL*KRQIEMVESS- 185
Query: 61 CVSGCWAVETAQHLFVSC 78
C E+A HLF C
Sbjct: 186CPFCSLVEESAGHLFFQC 239
>TC233056
Length = 680
Score = 43.1 bits (100), Expect = 2e-05
Identities = 23/55 (41%), Positives = 31/55 (55%)
Frame = -1
Query: 21 IWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLF 75
+W +P K ++ AW L+R+RLPTK NL R + D+ LC E A HLF
Sbjct: 659 LWKLKIPAKSAVFAWRLIRDRLPTKTNLRRRQVMLTDS-LCPFCRNKEEEATHLF 498
>TC233956
Length = 757
Score = 43.1 bits (100), Expect = 2e-05
Identities = 28/70 (40%), Positives = 33/70 (47%)
Frame = +2
Query: 9 DDNNTDVAVSELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAV 68
DD + +L W VP K W LL +RLPTK NL+ R D LC
Sbjct: 137 DDEGQHLGFKKL-WEIKVPPKALSFVWRLLWDRLPTKDNLIKRQIQVED-DLCPFCHSQS 310
Query: 69 ETAQHLFVSC 78
ETA HLF +C
Sbjct: 311 ETASHLFFTC 340
>BE610670
Length = 368
Score = 43.1 bits (100), Expect = 2e-05
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = -2
Query: 1 TGYDLLTADDN-NTDVAVSELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQ 59
+ Y+LL + + + + + S++IW+ +P + +W + +NRLPTKANL R P +
Sbjct: 265 SAYNLLKGEGSFDNEDSASKIIWNLKIPPRTIAFSWRIFKNRLPTKANLRRRQVELPSYR 86
Query: 60 LCVSGCWAVETAQHLFVSC 78
C E H+ SC
Sbjct: 85 -CPLCDLEEENVGHIMFSC 32
>CF920672
Length = 792
Score = 42.0 bits (97), Expect = 5e-05
Identities = 20/44 (45%), Positives = 27/44 (60%)
Frame = -3
Query: 8 ADDNNTDVAVSELIWHRHVPLKVSILAWCLLRNRLPTKANLVAR 51
A D D A+ +L W +PLK + AW L++NR+PTK NL R
Sbjct: 400 AADQTVDEALEDL-WQLKIPLKPTTFAWRLIKNRIPTKGNLRRR 272
>BU765000
Length = 425
Score = 42.0 bits (97), Expect = 5e-05
Identities = 24/58 (41%), Positives = 32/58 (54%)
Frame = +2
Query: 21 IWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVSC 78
+W VP KV++ AW LL++RLPT+ NL R + LC E+A HLF C
Sbjct: 59 LWKLKVPPKVAVFAWRLLKDRLPTRDNL-RRKQVELHEYLCPFCRTMEESACHLFFHC 229
>TC223713
Length = 420
Score = 41.2 bits (95), Expect = 9e-05
Identities = 24/53 (45%), Positives = 30/53 (56%)
Frame = +1
Query: 26 VPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVSC 78
VP+K ++ AW LLR+RLPTKANL R + + C E A HLF C
Sbjct: 124 VPIKFAVFAWRLLRDRLPTKANL-HRRQIEVTNRSCPFCSNMEEEAGHLFFHC 279
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.137 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,543,207
Number of Sequences: 63676
Number of extensions: 59539
Number of successful extensions: 453
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of query: 83
length of database: 12,639,632
effective HSP length: 59
effective length of query: 24
effective length of database: 8,882,748
effective search space: 213185952
effective search space used: 213185952
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)
Medicago: description of AC146554.10