Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146552.9 - phase: 0 /pseudo
         (454 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC218422 similar to UP|Q9FUY4 (Q9FUY4) Protein kinase AKINbetaga...   666  0.0
TC230992 similar to UP|Q944A6 (Q944A6) At1g09020/F7G19_11, parti...   299  2e-81
TC216681 similar to UP|Q944A6 (Q944A6) At1g09020/F7G19_11, parti...   275  3e-74
BF595033 similar to GP|16612255|gb| At1g09020/F7G19_11 {Arabidop...   112  8e-39
BF325178 weakly similar to GP|29887975|gb| AKIN betagamma {Medic...   112  3e-25
BG653065 similar to GP|11139548|gb protein kinase AKINbetagamma-...    92  9e-23
CA819632                                                               69  4e-12
TC211347 similar to UP|Q84PE0 (Q84PE0) AKIN betagamma, partial (...    60  2e-09
TC218790 similar to UP|Q7XYX7 (Q7XYX7) AKIN beta2, partial (89%)       52  4e-07
TC206653 similar to UP|Q7XYX8 (Q7XYX8) AKIN beta1, partial (97%)       52  6e-07
BU550514 weakly similar to GP|8778877|gb| T7N9.13 {Arabidopsis t...    52  7e-07
TC206652 similar to UP|Q7XYX8 (Q7XYX8) AKIN beta1, partial (96%)       50  3e-06
BG651924 weakly similar to GP|8778877|gb| T7N9.13 {Arabidopsis t...    50  3e-06
CD415370                                                               45  5e-05
CA938353 similar to GP|15010688|gb AT5g39790/MKM21_80 {Arabidops...    40  0.002
TC222796 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, parti...    40  0.002
BU548295 similar to GP|15010688|gb| AT5g39790/MKM21_80 {Arabidop...    37  0.024
TC223721 similar to UP|Q9LFY0 (Q9LFY0) T7N9.13, partial (10%)          37  0.024
CF806965                                                               31  1.3
TC223959 similar to UP|Q9LFY0 (Q9LFY0) T7N9.13, partial (5%)           31  1.3

>TC218422 similar to UP|Q9FUY4 (Q9FUY4) Protein kinase AKINbetagamma-2,
           partial (81%)
          Length = 1968

 Score =  666 bits (1718), Expect = 0.0
 Identities = 349/460 (75%), Positives = 383/460 (82%), Gaps = 6/460 (1%)
 Frame = +1

Query: 1   MFSPSMDSARDVGGVVAAGTVLIPVRFVWPYGGRTVYLSGSFTRWSELLQMSPVEGCPTV 60
           MFSPSMDSARD  GV  AGTVLIP+RFVWPYGGR+VYLSGSFTRWSELLQMSPVEGCPTV
Sbjct: 76  MFSPSMDSARDASGV--AGTVLIPMRFVWPYGGRSVYLSGSFTRWSELLQMSPVEGCPTV 249

Query: 61  FQVIHNLAPGYHQYKFFVDGEWRHDEHTPHITGDYGIVNTVLLATDP-FVPVLPPDIVSG 119
           FQVIH+L PG+HQYKFFVDGEWRHD+H P ++G+YGIVNTV LATDP  VPVL P+IVSG
Sbjct: 250 FQVIHSLIPGHHQYKFFVDGEWRHDDHQPCVSGEYGIVNTVSLATDPNIVPVLTPEIVSG 429

Query: 120 SNMDVDNETFQRVVRLTDGTLSEVM-PRISDVDVQTSRQRISTYLSMRTAYELLPESGKV 178
           SNMDVDNE F+R+VRLTDGTLS V+ PRISDVD+QTSRQRIS +LSM TAYELLPESGKV
Sbjct: 430 SNMDVDNEAFRRMVRLTDGTLSNVLLPRISDVDIQTSRQRISAFLSMSTAYELLPESGKV 609

Query: 179 VTLDVDLPVKQAFHILHEQGIPMAPLWDFCKGQFVGVLSVLDFILILRELGNHGSNLTEE 238
           VTLDVDLPVKQAFHILHEQGIP+APLWD CKGQFVGVLS LDFILILRELGNHGSNLTEE
Sbjct: 610 VTLDVDLPVKQAFHILHEQGIPIAPLWDICKGQFVGVLSALDFILILRELGNHGSNLTEE 789

Query: 239 ELETHTISAWKEGKWTLFSRRFIHAGPSDNLKDVALKILQNGISTVPIIHSSSADGSFPQ 298
           ELETHTISAWK GKWT F++ FI AGP DNLK++A+KILQNGISTVPIIHS   DGSFPQ
Sbjct: 790 ELETHTISAWKGGKWTGFTQCFIRAGPYDNLKEIAVKILQNGISTVPIIHSE--DGSFPQ 963

Query: 299 LLHLASLSGILRCILGVVLVHCPYFN--FQFVQFLWAHGCP-KLGRQIAGL*QH*DQMLL 355
           LLHLASLSGIL+CI       C YF      +  L    C   +G  +  + +   + L 
Sbjct: 964 LLHLASLSGILKCI-------CRYFRNCSSSLPILQLPICAIPVGTWVPKIGESNRRPLA 1122

Query: 356 LLQP*I-Y*FKFNIFFAAQVSSIPIVDESDSLLDIYCRSDITALAKDRAYTHINLDEMTV 414
           +L+P        N+   AQVSSIPIVD+SDSLLDIYCRSDITALAKDR YTHINLDEMTV
Sbjct: 1123MLRPNASLTSALNLLVQAQVSSIPIVDDSDSLLDIYCRSDITALAKDRTYTHINLDEMTV 1302

Query: 415 HQALQLSQDAFNPNESRSQRCQMCLRTDSLHKVMERLANP 454
           HQALQL QD++N  E   QRCQMCLRTDSLHKVMERLA+P
Sbjct: 1303HQALQLGQDSYNTYELSCQRCQMCLRTDSLHKVMERLASP 1422


>TC230992 similar to UP|Q944A6 (Q944A6) At1g09020/F7G19_11, partial (24%)
          Length = 826

 Score =  299 bits (766), Expect = 2e-81
 Identities = 144/180 (80%), Positives = 161/180 (89%), Gaps = 1/180 (0%)
 Frame = +3

Query: 1   MFSPSMDSARDVGGVVAAGTVLIPVRFVWPYGGRTVYLSGSFTRWSELLQMSPVEGCPTV 60
           MF  SMDSARD  G VA GTVLIP+RFVWPYGGR+V+LSGSFTRW ELL MSPVEGCPTV
Sbjct: 285 MFGQSMDSARDAAGGVA-GTVLIPMRFVWPYGGRSVFLSGSFTRWLELLPMSPVEGCPTV 461

Query: 61  FQVIHNLAPGYHQYKFFVDGEWRHDEHTPHITGDYGIVNTVLLATDP-FVPVLPPDIVSG 119
           FQVI+NL PGYHQYKFFVDGEWRHDEH P++ G+YGIVNTVLLATDP ++PVLPPD+ SG
Sbjct: 462 FQVIYNLPPGYHQYKFFVDGEWRHDEHQPYVPGEYGIVNTVLLATDPNYIPVLPPDVASG 641

Query: 120 SNMDVDNETFQRVVRLTDGTLSEVMPRISDVDVQTSRQRISTYLSMRTAYELLPESGKVV 179
           ++MDVDN+ F+R+VRLTDGTLSEV+PRISD DVQ SRQRIS +LS  TAYELLPESGKVV
Sbjct: 642 NSMDVDNDAFRRMVRLTDGTLSEVLPRISDTDVQISRQRISAFLSSHTAYELLPESGKVV 821


>TC216681 similar to UP|Q944A6 (Q944A6) At1g09020/F7G19_11, partial (50%)
          Length = 1328

 Score =  275 bits (703), Expect = 3e-74
 Identities = 155/240 (64%), Positives = 170/240 (70%), Gaps = 15/240 (6%)
 Frame = +2

Query: 230 NHGSNLTEEELETHTISAWKEGK----------WTLFSRRFIHAGPSDNLKDVALKILQN 279
           NHGSNLTEEELETHTISAWKEGK           T FSRRFIHAGP DNLKD+A+KILQ 
Sbjct: 2   NHGSNLTEEELETHTISAWKEGKSYLNRQNNGHGTTFSRRFIHAGPYDNLKDIAMKILQK 181

Query: 280 GISTVPIIHSSSADGSFPQLLHLASLSGILRCILGVVLVHC----PYFNFQFVQFLWAHG 335
            +STVPIIHSSS D SFPQLLHLASLSGIL+CI      HC    P              
Sbjct: 182 EVSTVPIIHSSSEDASFPQLLHLASLSGILKCICRYFR-HCSSSLPVLQLPICAIPVGTW 358

Query: 336 CPKLGRQIAGL*QH*DQMLLLLQP*IY*FK-FNIFFAAQVSSIPIVDESDSLLDIYCRSD 394
            PK+G           + L +L+P        N+   AQVSSIPIVD++DSLLDIYCRSD
Sbjct: 359 VPKIGESNR-------RPLAMLRPTASLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSD 517

Query: 395 ITALAKDRAYTHINLDEMTVHQALQLSQDAFNPNESRSQRCQMCLRTDSLHKVMERLANP 454
           ITALAK+RAYTHINLDEMTVHQALQL QDA++P E RSQRCQMCLR+D LHKVMERLANP
Sbjct: 518 ITALAKNRAYTHINLDEMTVHQALQLGQDAYSPYELRSQRCQMCLRSDPLHKVMERLANP 697


>BF595033 similar to GP|16612255|gb| At1g09020/F7G19_11 {Arabidopsis
           thaliana}, partial (11%)
          Length = 413

 Score =  112 bits (280), Expect(2) = 8e-39
 Identities = 55/67 (82%), Positives = 62/67 (92%)
 Frame = +3

Query: 368 IFFAAQVSSIPIVDESDSLLDIYCRSDITALAKDRAYTHINLDEMTVHQALQLSQDAFNP 427
           ++F AQVSSIPIVD++DSLLDIYCRSDITALAK+RAYTHINLDEMTVHQALQL  DA++P
Sbjct: 213 LYF*AQVSSIPIVDDNDSLLDIYCRSDITALAKNRAYTHINLDEMTVHQALQLGXDAYSP 392

Query: 428 NESRSQR 434
            E RSQR
Sbjct: 393 YELRSQR 413



 Score = 66.6 bits (161), Expect(2) = 8e-39
 Identities = 34/42 (80%), Positives = 35/42 (82%)
 Frame = +1

Query: 324 NFQFVQFLWAHGCPKLGRQIAGL*QH*DQMLLLLQP*IY*FK 365
           NFQ VQ+LWA GCPKLG QI GL*Q *DQ LLL QP*IY*FK
Sbjct: 4   NFQSVQYLWARGCPKLGNQIGGL*QC*DQPLLLRQP*IY*FK 129


>BF325178 weakly similar to GP|29887975|gb| AKIN betagamma {Medicago
           truncatula}, partial (14%)
          Length = 361

 Score =  112 bits (281), Expect = 3e-25
 Identities = 59/97 (60%), Positives = 70/97 (71%), Gaps = 10/97 (10%)
 Frame = +2

Query: 226 RELGNHGSNLTEEELETHTISAWKEGKWTLFSR----------RFIHAGPSDNLKDVALK 275
           +ELGNHGSNLT+E+LETHTI+AWKEGK+  F            +FIH  P   LK++ALK
Sbjct: 2   KELGNHGSNLTQEQLETHTIAAWKEGKFQQFRTLDXNGGSYP*QFIHTEPHKYLKNIALK 181

Query: 276 ILQNGISTVPIIHSSSADGSFPQLLHLASLSGILRCI 312
           +LQN   TVPIIHSSS D ++ QLLHL SLSGILR I
Sbjct: 182 VLQNRSITVPIIHSSSEDNAYAQLLHLTSLSGILRNI 292


>BG653065 similar to GP|11139548|gb protein kinase AKINbetagamma-2 {Zea
           mays}, partial (20%)
          Length = 416

 Score = 92.4 bits (228), Expect(2) = 9e-23
 Identities = 52/88 (59%), Positives = 56/88 (63%)
 Frame = +1

Query: 367 NIFFAAQVSSIPIVDESDSLLDIYCRSDITALAKDRAYTHINLDEMTVHQALQLSQDAFN 426
           N+   AQVSSIPIVD++DSLLDIYCRSDITALAK+RAYTHINLDEM              
Sbjct: 55  NLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKNRAYTHINLDEM-------------- 192

Query: 427 PNESRSQRCQMCLRTDSLHKVMERLANP 454
                         TD LHKVMERLANP
Sbjct: 193 --------------TDPLHKVMERLANP 234



 Score = 32.7 bits (73), Expect(2) = 9e-23
 Identities = 19/23 (82%), Positives = 19/23 (82%)
 Frame = +2

Query: 343 IAGL*QH*DQMLLLLQP*IY*FK 365
           I GL*Q *DQ LLL QP*IY*FK
Sbjct: 2   IGGL*QC*DQPLLLRQP*IY*FK 70


>CA819632 
          Length = 353

 Score = 68.9 bits (167), Expect = 4e-12
 Identities = 32/48 (66%), Positives = 38/48 (78%)
 Frame = +2

Query: 258 RRFIHAGPSDNLKDVALKILQNGISTVPIIHSSSADGSFPQLLHLASL 305
           RRFIHAGP DNLKD+A+KILQ  +STVPIIHSSS D S P +++   L
Sbjct: 2   RRFIHAGPYDNLKDIAMKILQKEVSTVPIIHSSSEDASAPNIVNFKKL 145


>TC211347 similar to UP|Q84PE0 (Q84PE0) AKIN betagamma, partial (16%)
          Length = 666

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 29/46 (63%), Positives = 37/46 (80%), Gaps = 1/46 (2%)
 Frame = +3

Query: 410 DEMTVHQALQLSQDAFNPNES-RSQRCQMCLRTDSLHKVMERLANP 454
           DE+++HQAL L QDA +P+     QRC MCLR++SL+KVMERLANP
Sbjct: 3   DEISIHQALLLGQDATSPSGIYNGQRCHMCLRSESLYKVMERLANP 140


>TC218790 similar to UP|Q7XYX7 (Q7XYX7) AKIN beta2, partial (89%)
          Length = 1533

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 31/101 (30%), Positives = 47/101 (45%)
 Frame = +1

Query: 23  IPVRFVWPYGGRTVYLSGSFTRWSELLQMSPVEGCPTVFQVIHNLAPGYHQYKFFVDGEW 82
           IP    W Y G+ V + GS+  W   +   P++     F ++  L  G +Q++F VDG+W
Sbjct: 625 IPTMITWSYDGKEVAVEGSWDNWKTRM---PLQRSGKDFTIMKVLPSGVYQFRFIVDGQW 795

Query: 83  RHDEHTPHITGDYGIVNTVLLATDPFVPVLPPDIVSGSNMD 123
           R+    P    D G    VL   D     +P DI S S+ +
Sbjct: 796 RYAPDLPWAQDDSGNAYNVLDLQD----YVPEDIGSISSFE 906


>TC206653 similar to UP|Q7XYX8 (Q7XYX8) AKIN beta1, partial (97%)
          Length = 1071

 Score = 52.0 bits (123), Expect = 6e-07
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
 Frame = +1

Query: 23  IPVRFVWPYGGRTVYLSGSFTRWS--ELLQMSPVEGCPTVFQVIHNLAPGYHQYKFFVDG 80
           IPV   W YGG  V + GS+  W+  + LQ S  +       ++  L PG + Y+F VDG
Sbjct: 520 IPVMITWNYGGNNVAVEGSWDNWTSRKALQRSGKD-----HSILIVLPPGIYHYRFIVDG 684

Query: 81  EWRHDEHTPHITGDYGIVNTVLLATDPFVPVLPPDI 116
           E R     P++  + G V  +L   D +VP  P  +
Sbjct: 685 EERFTPQLPNVPDEMGHVCNLLDVND-YVPENPDGV 789


>BU550514 weakly similar to GP|8778877|gb| T7N9.13 {Arabidopsis thaliana},
           partial (19%)
          Length = 526

 Score = 51.6 bits (122), Expect = 7e-07
 Identities = 29/79 (36%), Positives = 41/79 (51%)
 Frame = -1

Query: 28  VWPYGGRTVYLSGSFTRWSELLQMSPVEGCPTVFQVIHNLAPGYHQYKFFVDGEWRHDEH 87
           VWP     V L+GSF  WS   +M  +     +F +   L PG ++ KF VDGEW+ D  
Sbjct: 313 VWPNSASEVLLTGSFDGWSTKRKMERLSS--GIFSLNLQLYPGRYEMKFIVDGEWKIDPL 140

Query: 88  TPHITGDYGIVNTVLLATD 106
            P +T + G  N +L+  D
Sbjct: 139 RPVVTSN-GYENNLLIIYD 86


>TC206652 similar to UP|Q7XYX8 (Q7XYX8) AKIN beta1, partial (96%)
          Length = 1242

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 30/94 (31%), Positives = 44/94 (45%)
 Frame = +3

Query: 23  IPVRFVWPYGGRTVYLSGSFTRWSELLQMSPVEGCPTVFQVIHNLAPGYHQYKFFVDGEW 82
           IPV   W YGG  V + GS+  W+    +    G    F ++  L PG + Y+F  DGE 
Sbjct: 573 IPVMITWNYGGNNVAVEGSWDNWTSRKALQRA-GKDHSFLIV--LPPGIYHYRFIADGEE 743

Query: 83  RHDEHTPHITGDYGIVNTVLLATDPFVPVLPPDI 116
           R     P++  + G V  +L   D +VP  P  +
Sbjct: 744 RFIPELPNVADEMGHVCNLLDVND-YVPENPDGV 842


>BG651924 weakly similar to GP|8778877|gb| T7N9.13 {Arabidopsis thaliana},
           partial (21%)
          Length = 384

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 28/79 (35%), Positives = 41/79 (51%)
 Frame = +3

Query: 28  VWPYGGRTVYLSGSFTRWSELLQMSPVEGCPTVFQVIHNLAPGYHQYKFFVDGEWRHDEH 87
           VWP     V L+GSF  WS   +M  +     +F +   L PG ++ KF V+GEW+ D  
Sbjct: 138 VWPNSASEVLLTGSFDGWSTKRKMERLSS--GIFSLNLQLYPGRYEMKFIVNGEWKIDPL 311

Query: 88  TPHITGDYGIVNTVLLATD 106
            P +T + G  N +L+  D
Sbjct: 312 RPVVTSN-GYENNLLIIYD 365


>CD415370 
          Length = 649

 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 29/81 (35%), Positives = 40/81 (48%), Gaps = 2/81 (2%)
 Frame = -3

Query: 25  VRFVWP-YGGRTVYLSGSFT-RWSELLQMSPVEGCPTVFQVIHNLAPGYHQYKFFVDGEW 82
           V FVW  + G  V L G FT  W E L+     G     +V   L  G + YKF V+G+W
Sbjct: 590 VTFVWNGHEGEDVTLVGDFTGNWKEPLKAKHQGGSRHEVEV--KLPQGKYYYKFIVNGQW 417

Query: 83  RHDEHTPHITGDYGIVNTVLL 103
           +H   +P    D G VN +++
Sbjct: 416 KHSTASPAERDDKGNVNNIIV 354


>CA938353 similar to GP|15010688|gb AT5g39790/MKM21_80 {Arabidopsis
           thaliana}, partial (40%)
          Length = 406

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +1

Query: 25  VRFVWPYGGRTVYLSGSFTRWSELLQMSP-VEGCPTVFQVIHNLAPGYHQYKFFVDGEWR 83
           V   W     +V + G+F  WS+   +SP   G  T F     L PG ++ KF VDGEW 
Sbjct: 91  VSVFWVGMAESVQVMGTFDGWSQGEHLSPEYTGSYTRFSTTLLLRPGRYEIKFLVDGEWH 270

Query: 84  HDEHTPHITGDYGIVNTVLLATD 106
                P I G+ G+    LL  +
Sbjct: 271 LSPEFP-IIGE-GLTKNNLLVVE 333


>TC222796 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partial (23%)
          Length = 405

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 22/60 (36%), Positives = 30/60 (49%), Gaps = 1/60 (1%)
 Frame = +1

Query: 25 VRFVWPYGGRTVYLSGSFTRWSELLQMSP-VEGCPTVFQVIHNLAPGYHQYKFFVDGEWR 83
          V   W     +V + G+F  WS+   +SP   G  T F     L PG ++ KF VDGEW+
Sbjct: 1  VSVFWVGMAESVQVMGTFDGWSQGEHLSPEYTGSYTRFSTTLLLRPGRYEIKFLVDGEWK 180


>BU548295 similar to GP|15010688|gb| AT5g39790/MKM21_80 {Arabidopsis
           thaliana}, partial (25%)
          Length = 436

 Score = 36.6 bits (83), Expect = 0.024
 Identities = 25/74 (33%), Positives = 36/74 (47%), Gaps = 1/74 (1%)
 Frame = -3

Query: 34  RTVYLSGSFTRWSELLQMSP-VEGCPTVFQVIHNLAPGYHQYKFFVDGEWRHDEHTPHIT 92
           ++V + G+   WS+   +SP   G  T F     L PG ++ KF VDGEW      P I 
Sbjct: 350 QSVQVMGTXDGWSQGEHLSPEYTGSYTRFSTTLLLRPGRYEIKFLVDGEWHLSPEFP-II 174

Query: 93  GDYGIVNTVLLATD 106
           G+ G+    LL  +
Sbjct: 173 GE-GLTKNNLLVVE 135


>TC223721 similar to UP|Q9LFY0 (Q9LFY0) T7N9.13, partial (10%)
          Length = 416

 Score = 36.6 bits (83), Expect = 0.024
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +3

Query: 60  VFQVIHNLAPGYHQYKFFVDGEWRHDEHTPHITGDYGIVNTVLLATD 106
           +F +   L PG ++ KF VDGEW+ D   P +T + G  N +L+  D
Sbjct: 246 IFSLNLQLYPGRYEMKFIVDGEWKIDPLRPVVTSN-GYENNLLIIYD 383


>CF806965 
          Length = 421

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +2

Query: 67  LAPGYHQYKFFVDGEWRHDEHTPHITGDYGIVNTVLLATDPFVPVLPPDIVSGSNMD 123
           L  G +QY+F VDG  R+   +P    D G    +L   D     +P DI S S+ +
Sbjct: 11  LPSGVYQYRFIVDGRMRYTPDSPWAQDDAGDAYNILDLQD----YVPEDIGSISSFE 169


>TC223959 similar to UP|Q9LFY0 (Q9LFY0) T7N9.13, partial (5%)
          Length = 922

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 73  QYKFFVDGEWRHDEHTPHITGDYGIVNTVLLATD 106
           Q KF VDGEW+ D   P +T + G  N +L+  D
Sbjct: 832 QMKFIVDGEWKIDPLRPVVTSN-GYENNLLIVHD 734


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.328    0.142    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,219,241
Number of Sequences: 63676
Number of extensions: 316931
Number of successful extensions: 1822
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 1799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1807
length of query: 454
length of database: 12,639,632
effective HSP length: 100
effective length of query: 354
effective length of database: 6,272,032
effective search space: 2220299328
effective search space used: 2220299328
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)


Medicago: description of AC146552.9