BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146551.12 + phase: 0 /pseudo
(447 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC210984 207 8e-54
TC224534 similar to UP|Q6USA0 (Q6USA0) Transposase (Fragment), p... 134 8e-32
BQ742132 weakly similar to GP|28416671|gb| At5g41980 {Arabidopsi... 92 6e-19
TC234723 similar to UP|Q9FHY5 (Q9FHY5) Emb|CAB72466.1 (At5g41980... 81 1e-15
TC231809 72 7e-13
TC212187 weakly similar to UP|Q6USA0 (Q6USA0) Transposase (Fragm... 63 2e-10
AW396897 similar to GP|28416671|gb| At5g41980 {Arabidopsis thali... 59 4e-09
TC215451 weakly similar to UP|Q94K07 (Q94K07) Nucleosome assembl... 40 0.002
TC215452 similar to UP|P93488 (P93488) NAP1Ps, partial (29%) 40 0.002
TC203361 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%) 40 0.003
TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Pro... 39 0.004
TC203635 similar to PIR|T46225|T46225 alpha NAC-like protein - A... 39 0.005
TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 39 0.006
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A... 38 0.008
TC215450 similar to UP|P93488 (P93488) NAP1Ps, partial (30%) 37 0.014
TC215201 similar to UP|Q70Z19 (Q70Z19) Nucleosome assembly prote... 37 0.014
TC215449 similar to UP|P93488 (P93488) NAP1Ps, partial (97%) 37 0.014
TC204850 similar to GB|AAM16178.1|20334844|AY094022 AT3g12390/T2... 37 0.018
TC218918 UP|Q39892 (Q39892) Nucleosome assembly protein 1, complete 37 0.024
TC210126 similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C2... 36 0.031
>TC210984
Length = 1085
Score = 207 bits (527), Expect = 8e-54
Identities = 100/114 (87%), Positives = 109/114 (94%)
Frame = +3
Query: 330 KELFNLRHASLRNVVERIFGIFKSRFTIFKSAPPFLFKTQAELVLACAALHNFLRKECRS 389
KELFNLRHASLRNV+ERIFGIFKSRFTIFKSAPPFLFKTQAELVLACAALHNFLRKECRS
Sbjct: 423 KELFNLRHASLRNVIERIFGIFKSRFTIFKSAPPFLFKTQAELVLACAALHNFLRKECRS 602
Query: 390 DEFPIEPSNESSSSSSMLPIHEDNNDELNVQTQEQEREDANIWRTNLGLDMWRD 443
DEFP+EP++ESSSSSS+LP +EDN+ E VQTQEQEREDANIWRTN+G DMWR+
Sbjct: 603 DEFPVEPTDESSSSSSVLPNYEDNDHEPIVQTQEQEREDANIWRTNIGSDMWRN 764
>TC224534 similar to UP|Q6USA0 (Q6USA0) Transposase (Fragment), partial (50%)
Length = 968
Score = 134 bits (337), Expect = 8e-32
Identities = 74/170 (43%), Positives = 95/170 (55%), Gaps = 29/170 (17%)
Frame = +1
Query: 250 AIDGTHIPALVRGRDVSSYRDRHGRISQNVLAACNFDLEFMYVLSGWEGSAHDSKLLNDA 309
A+DG HIP V D Y +R G I NVL AC +L F+YVL GWEGSA DS++L DA
Sbjct: 262 ALDGIHIPVTVTAEDRPRYHNRKGDIFTNVLGACGPNLRFIYVLPGWEGSAGDSRVL*DA 441
Query: 310 LKRKNGLKVPHGH-----------------------------GNDPENEKELFNLRHASL 340
L R+N L +P+G GN P+N KELFNLRHAS
Sbjct: 442 LHRQNCLHIPNGKYFLVDAGYTNGPGFLTPY*RTRYHRNEWIGNTPQNYKELFNLRHASA 621
Query: 341 RNVVERIFGIFKSRFTIFKSAPPFLFKTQAELVLACAALHNFLRKECRSD 390
+NV+ER FG+ K R++I ++ F KTQ ++ C L NF+R E +SD
Sbjct: 622 KNVIERSFGVLKKRWSILRTPSFFDIKTQIRIINTCFMLRNFIRDEQQSD 771
>BQ742132 weakly similar to GP|28416671|gb| At5g41980 {Arabidopsis thaliana},
partial (25%)
Length = 429
Score = 91.7 bits (226), Expect = 6e-19
Identities = 45/112 (40%), Positives = 67/112 (59%)
Frame = +3
Query: 82 LNGDSEIFRQVYRMYPDVFRKLCMIIREKTPLVDTRFICIEEMLASFLQIVGQNTRYCII 141
LNG + R++ RM VF KLC I+R++ L DT + IEE LA FL ++G N R +I
Sbjct: 9 LNGHGDFCREMLRMDKHVFHKLCDILRQRAMLRDTAGVMIEEQLAIFLNVIGHNERNRVI 188
Query: 142 RNTFGRSQFAASENFHKILKALNSIAPDLMAKPTSSVPAKIRESTRFYPYFK 193
+ F S S +F+ +LKA+ S++ +++ P P +I + RFYPYFK
Sbjct: 189 QERFQHSGETISRHFNNVLKAIKSLSREVLQPPQLKTPPEILNNARFYPYFK 344
>TC234723 similar to UP|Q9FHY5 (Q9FHY5) Emb|CAB72466.1 (At5g41980), partial
(24%)
Length = 837
Score = 80.9 bits (198), Expect = 1e-15
Identities = 47/129 (36%), Positives = 75/129 (57%), Gaps = 11/129 (8%)
Frame = +2
Query: 326 PENEKELFNLRHASLRNVVERIFGIFKSRFTIFKSAPPFLFKTQAELVLACAALHNFLRK 385
P++ ELFN RH+ LR+V++R FGI K+RF I SAP + +TQ +LV+A ALHN++R+
Sbjct: 242 PQDASELFNQRHSLLRHVIDRTFGILKARFPILMSAPSYPLQTQVKLVVAACALHNYIRR 421
Query: 386 ECRSDEFPIEPSNESS--SSSSMLPIHEDNNDELNVQTQEQ---------EREDANIWRT 434
E + D++ + E S S P+ + +++V+TQ Q E A+ R
Sbjct: 422 E-KPDDWLFKMYEEGSFPMEESQPPLEMEVPPKMDVETQTQPSVHTFDSEEIALASQLRD 598
Query: 435 NLGLDMWRD 443
++ +MW D
Sbjct: 599 SIATEMWND 625
>TC231809
Length = 760
Score = 71.6 bits (174), Expect = 7e-13
Identities = 33/65 (50%), Positives = 44/65 (66%)
Frame = +3
Query: 326 PENEKELFNLRHASLRNVVERIFGIFKSRFTIFKSAPPFLFKTQAELVLACAALHNFLRK 385
P N KELFN RH LRN + R F + K+RF I K AP + F+ Q ++V+A LHNF+R+
Sbjct: 195 PRNAKELFNHRHCFLRNAILRSFNVLKTRFPILKLAPQYSFQIQRDIVIAGCVLHNFIRR 374
Query: 386 ECRSD 390
E R+D
Sbjct: 375 EERND 389
>TC212187 weakly similar to UP|Q6USA0 (Q6USA0) Transposase (Fragment),
partial (45%)
Length = 973
Score = 63.2 bits (152), Expect = 2e-10
Identities = 34/101 (33%), Positives = 58/101 (56%), Gaps = 2/101 (1%)
Frame = +1
Query: 331 ELFNLRHASLRNVVERIFGIFKSRFTIFKSAPPFLFKTQAELVLACAALHNFLRKECRSD 390
E+FN H+SL++ +ER FG+ K+R+ I + PF KTQ ++++AC +HNF+++ +SD
Sbjct: 628 EVFNYYHSSLQSTIERAFGLCKARWKILGNMSPFALKTQNQIIVACMTIHNFIQRNDKSD 807
Query: 391 -EF-PIEPSNESSSSSSMLPIHEDNNDELNVQTQEQEREDA 429
EF ++ NE + + + E+ T E DA
Sbjct: 808 GEFDSLDEDNEYIDT-------DKDESEVGPSTTTWEESDA 909
Score = 56.2 bits (134), Expect = 3e-08
Identities = 26/56 (46%), Positives = 34/56 (60%)
Frame = +2
Query: 250 AIDGTHIPALVRGRDVSSYRDRHGRISQNVLAACNFDLEFMYVLSGWEGSAHDSKL 305
AIDGTHI V Y R G + NV+ C+F + F +V +GWEGSAHD+K+
Sbjct: 209 AIDGTHIRVCVPSHLQGVYSGRKGYTTTNVMIVCDFSMCFTFVWAGWEGSAHDTKI 376
>AW396897 similar to GP|28416671|gb| At5g41980 {Arabidopsis thaliana},
partial (24%)
Length = 430
Score = 58.9 bits (141), Expect = 4e-09
Identities = 39/121 (32%), Positives = 61/121 (50%)
Frame = +2
Query: 43 HALMHVVNQFLNMMRGEHVERPLTRRRITSKGYDYIHKSLNGDSEIFRQVYRMYPDVFRK 102
++LM + + + G H + L + S G +I + LNG +E + +RM VF K
Sbjct: 74 NSLMESSEEENDGVSGNHATKELIH--LASNGAKFIDEVLNGQNECCLENFRMDKHVFYK 247
Query: 103 LCMIIREKTPLVDTRFICIEEMLASFLQIVGQNTRYCIIRNTFGRSQFAASENFHKILKA 162
LC I++ K L T I IEE L F+ I+G N R ++ F S S +F+ +L A
Sbjct: 248 LCDILQAKGLLRHTNRIKIEEQLGIFMFIIGHNLRTRAVQELFRYSGETISRHFNNVLNA 427
Query: 163 L 163
+
Sbjct: 428 I 430
>TC215451 weakly similar to UP|Q94K07 (Q94K07) Nucleosome assembly protein,
partial (20%)
Length = 777
Score = 40.4 bits (93), Expect = 0.002
Identities = 18/32 (56%), Positives = 24/32 (74%), Gaps = 2/32 (6%)
Frame = +2
Query: 1 MSEDIDTEAI--DDDDDDEDDDDTDDEETDEE 30
+ +D D E I DDD+D+EDDDD DD++ DEE
Sbjct: 86 LEDDEDDEDIEEDDDEDEEDDDDDDDDDDDEE 181
Score = 38.1 bits (87), Expect = 0.008
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +2
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
+D D E DD+D+++DDDD DD++ +EE
Sbjct: 101 DDEDIEEDDDEDEEDDDDDDDDDDDEEE 184
Score = 37.4 bits (85), Expect = 0.014
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +2
Query: 1 MSEDIDTEAIDDDDDDEDDDDTDDEETDEEL 31
+ ED D + DDDDDD+DDDD ++ +T +++
Sbjct: 113 IEEDDDEDEEDDDDDDDDDDDEEESKTKKKV 205
Score = 36.6 bits (83), Expect = 0.024
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +2
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
EDI+ + +D++DD+DDDD DD+E + +
Sbjct: 107 EDIEEDDDEDEEDDDDDDDDDDDEEESK 190
Score = 32.3 bits (72), Expect = 0.44
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 6 DTEAIDDDDDDEDDDDTDDEETDEE 30
D E +DD+D E+DDD D+E+ D++
Sbjct: 83 DLEDDEDDEDIEEDDDEDEEDDDDD 157
Score = 29.3 bits (64), Expect = 3.8
Identities = 8/27 (29%), Positives = 21/27 (77%)
Frame = +2
Query: 4 DIDTEAIDDDDDDEDDDDTDDEETDEE 30
D++ + D+D +++DD+D +D++ D++
Sbjct: 83 DLEDDEDDEDIEEDDDEDEEDDDDDDD 163
Score = 28.1 bits (61), Expect = 8.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
E I + D +DDEDD+D ++++ ++E
Sbjct: 56 EAIQGDEFGDLEDDEDDEDIEEDDDEDE 139
>TC215452 similar to UP|P93488 (P93488) NAP1Ps, partial (29%)
Length = 609
Score = 40.4 bits (93), Expect = 0.002
Identities = 18/32 (56%), Positives = 24/32 (74%), Gaps = 2/32 (6%)
Frame = +3
Query: 1 MSEDIDTEAI--DDDDDDEDDDDTDDEETDEE 30
+ +D D E I DDD+D+EDDDD DD++ DEE
Sbjct: 135 LEDDEDDEDIEEDDDEDEEDDDDDDDDDDDEE 230
Score = 38.1 bits (87), Expect = 0.008
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +3
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
+D D E DD+D+++DDDD DD++ +EE
Sbjct: 150 DDEDIEEDDDEDEEDDDDDDDDDDDEEE 233
Score = 37.0 bits (84), Expect = 0.018
Identities = 14/30 (46%), Positives = 22/30 (72%)
Frame = +3
Query: 1 MSEDIDTEAIDDDDDDEDDDDTDDEETDEE 30
+ ED D + DDDDDD+DDDD ++ +T ++
Sbjct: 162 IEEDDDEDEEDDDDDDDDDDDEEESKTKKK 251
Score = 36.6 bits (83), Expect = 0.024
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +3
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
EDI+ + +D++DD+DDDD DD+E + +
Sbjct: 156 EDIEEDDDEDEEDDDDDDDDDDDEEESK 239
Score = 32.3 bits (72), Expect = 0.44
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 6 DTEAIDDDDDDEDDDDTDDEETDEE 30
D E +DD+D E+DDD D+E+ D++
Sbjct: 132 DLEDDEDDEDIEEDDDEDEEDDDDD 206
Score = 29.3 bits (64), Expect = 3.8
Identities = 8/27 (29%), Positives = 21/27 (77%)
Frame = +3
Query: 4 DIDTEAIDDDDDDEDDDDTDDEETDEE 30
D++ + D+D +++DD+D +D++ D++
Sbjct: 132 DLEDDEDDEDIEEDDDEDEEDDDDDDD 212
Score = 28.1 bits (61), Expect = 8.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
E I + D +DDEDD+D ++++ ++E
Sbjct: 105 EAIQGDEFGDLEDDEDDEDIEEDDDEDE 188
>TC203361 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%)
Length = 1090
Score = 39.7 bits (91), Expect = 0.003
Identities = 17/27 (62%), Positives = 20/27 (73%)
Frame = -1
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDE 29
E+ + E DD DDDEDDDD DD+E DE
Sbjct: 418 EEDEDEDGDDQDDDEDDDDDDDDEEDE 338
Score = 37.0 bits (84), Expect = 0.018
Identities = 15/28 (53%), Positives = 21/28 (74%)
Frame = -1
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
ED D + DDD+DD+DDDD +++E EE
Sbjct: 409 EDEDGDDQDDDEDDDDDDDDEEDEGGEE 326
Score = 35.0 bits (79), Expect = 0.069
Identities = 16/30 (53%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Frame = -1
Query: 3 EDIDTEAIDDDDDDEDDDDTDD--EETDEE 30
ED D + D+DDDD+DDD+ D+ EE DE+
Sbjct: 403 EDGDDQDDDEDDDDDDDDEEDEGGEEEDED 314
Score = 34.3 bits (77), Expect = 0.12
Identities = 13/29 (44%), Positives = 21/29 (71%)
Frame = -1
Query: 2 SEDIDTEAIDDDDDDEDDDDTDDEETDEE 30
+E+ E D+D DD+DDD+ DD++ D+E
Sbjct: 433 AEENGEEDEDEDGDDQDDDEDDDDDDDDE 347
Score = 32.3 bits (72), Expect = 0.44
Identities = 12/28 (42%), Positives = 20/28 (70%)
Frame = -1
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
E+ + + +D DD +DD+D DD++ DEE
Sbjct: 427 ENGEEDEDEDGDDQDDDEDDDDDDDDEE 344
Score = 32.0 bits (71), Expect = 0.58
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 6 DTEAIDDDDDDEDDDDTDDEETDEE 30
D + DD DD++DDD DD++ ++E
Sbjct: 412 DEDEDGDDQDDDEDDDDDDDDEEDE 338
Score = 31.2 bits (69), Expect = 0.99
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 6 DTEAIDDDDDDEDDDDTDDEETDEE 30
+ E D DD D+D+DD DD++ +E+
Sbjct: 415 EDEDEDGDDQDDDEDDDDDDDDEED 341
Score = 31.2 bits (69), Expect = 0.99
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 9/37 (24%)
Frame = -1
Query: 3 EDIDTEAIDDDDDD---------EDDDDTDDEETDEE 30
+D D + DDDDDD ED+D +DEE +E+
Sbjct: 394 DDQDDDEDDDDDDDDEEDEGGEEEDEDGAEDEENEED 284
>TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23),
partial (8%)
Length = 581
Score = 39.3 bits (90), Expect = 0.004
Identities = 16/28 (57%), Positives = 21/28 (74%)
Frame = +2
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
+D D + D+DD DEDDDD +DE+ DEE
Sbjct: 443 DDDDDDDNDEDDGDEDDDDEEDEDEDEE 526
Score = 38.9 bits (89), Expect = 0.005
Identities = 16/27 (59%), Positives = 20/27 (73%)
Frame = +2
Query: 4 DIDTEAIDDDDDDEDDDDTDDEETDEE 30
D D E DDDDDD D+DD D+++ DEE
Sbjct: 425 DDDDEDDDDDDDDNDEDDGDEDDDDEE 505
Score = 35.8 bits (81), Expect = 0.040
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
E D + DDDDDD++D+D DE+ D+E
Sbjct: 419 ESDDDDEDDDDDDDDNDEDDGDEDDDDE 502
Score = 35.4 bits (80), Expect = 0.052
Identities = 16/30 (53%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 2 SEDIDTEAIDDDDD-DEDDDDTDDEETDEE 30
S+D D + DDDDD DEDD D DD++ ++E
Sbjct: 422 SDDDDEDDDDDDDDNDEDDGDEDDDDEEDE 511
Score = 35.0 bits (79), Expect = 0.069
Identities = 13/28 (46%), Positives = 21/28 (74%)
Frame = +2
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
+D D + DDD+D++D D+ DD+E DE+
Sbjct: 431 DDEDDDDDDDDNDEDDGDEDDDDEEDED 514
Score = 34.3 bits (77), Expect = 0.12
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 6 DTEAIDDDDDDEDDDDTDDEETDEE 30
DTE DDDDD D +D DD++ D+E
Sbjct: 275 DTEDDDDDDDVNDGEDGDDDDEDDE 349
Score = 32.3 bits (72), Expect = 0.44
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
+D + + DDD++DDD DD++ DE+
Sbjct: 392 DDPEANGGGESDDDDEDDDDDDDDNDED 475
Score = 30.8 bits (68), Expect = 1.3
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
E+ D +DDDDD+D +D +D + D+E
Sbjct: 257 ENKDASDTEDDDDDDDVNDGEDGDDDDE 340
Score = 30.4 bits (67), Expect = 1.7
Identities = 11/27 (40%), Positives = 20/27 (73%)
Frame = +2
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDE 29
+D + E D+DDD+++D+ +DEET +
Sbjct: 455 DDDNDEDDGDEDDDDEEDEDEDEETPQ 535
Score = 28.9 bits (63), Expect = 4.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 4 DIDTEAIDDDDDDEDDDDTDDEETDEE 30
D D EA + D+DD+D DD++ D +
Sbjct: 389 DDDPEANGGGESDDDDEDDDDDDDDND 469
Score = 28.9 bits (63), Expect = 4.9
Identities = 12/28 (42%), Positives = 17/28 (59%)
Frame = +2
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
+D + D DDDDEDD+D ++ EE
Sbjct: 296 DDDVNDGEDGDDDDEDDEDFSGDDGGEE 379
Score = 28.9 bits (63), Expect = 4.9
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Frame = +2
Query: 2 SEDIDTEAIDDDDDDE-------DDDDTDDEETDEE 30
S D E D DDD E DDDD DD++ D++
Sbjct: 356 SGDDGGEEADSDDDPEANGGGESDDDDEDDDDDDDD 463
>TC203635 similar to PIR|T46225|T46225 alpha NAC-like protein - Arabidopsis
thaliana {Arabidopsis thaliana;} , partial (71%)
Length = 1007
Score = 38.9 bits (89), Expect = 0.005
Identities = 15/28 (53%), Positives = 21/28 (74%)
Frame = +1
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
ED+ + DDDD+D+DDDD DD+E D +
Sbjct: 178 EDLKDDDKDDDDEDDDDDDEDDKEDDAQ 261
Score = 29.6 bits (65), Expect = 2.9
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
++ D ++D DD+ DDD +D++ D+E
Sbjct: 154 QEDDAPLVEDLKDDDKDDDDEDDDDDDE 237
Score = 28.5 bits (62), Expect = 6.4
Identities = 11/30 (36%), Positives = 18/30 (59%)
Frame = +1
Query: 1 MSEDIDTEAIDDDDDDEDDDDTDDEETDEE 30
+ +D + +DDDDD++DD DD + E
Sbjct: 184 LKDDDKDDDDEDDDDDDEDDKEDDAQGGAE 273
>TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 1056
Score = 38.5 bits (88), Expect = 0.006
Identities = 16/28 (57%), Positives = 21/28 (74%)
Frame = -3
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
ED D + DDDD+D+DDDD +DE +EE
Sbjct: 442 EDEDGDDQDDDDEDDDDDDEEDEAGEEE 359
Score = 37.4 bits (85), Expect = 0.014
Identities = 15/24 (62%), Positives = 18/24 (74%)
Frame = -3
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEE 26
ED D + D DDDDEDDDD D+E+
Sbjct: 448 EDEDEDGDDQDDDDEDDDDDDEED 377
Score = 37.0 bits (84), Expect = 0.018
Identities = 15/29 (51%), Positives = 21/29 (71%)
Frame = -3
Query: 2 SEDIDTEAIDDDDDDEDDDDTDDEETDEE 30
+E+ E D+D DD+DDDD DD++ DEE
Sbjct: 466 AEENGEEDEDEDGDDQDDDDEDDDDDDEE 380
Score = 34.7 bits (78), Expect = 0.089
Identities = 14/26 (53%), Positives = 19/26 (72%)
Frame = -3
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETD 28
E+ + E DD DDD++DDD DDEE +
Sbjct: 451 EEDEDEDGDDQDDDDEDDDDDDEEDE 374
Score = 33.9 bits (76), Expect = 0.15
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 6 DTEAIDDDDDDEDDDDTDDEETDE 29
D + DD DD+D+DD DD+E DE
Sbjct: 445 DEDEDGDDQDDDDEDDDDDDEEDE 374
Score = 31.6 bits (70), Expect = 0.76
Identities = 12/26 (46%), Positives = 19/26 (72%)
Frame = -3
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETD 28
+D D + DDDDDDE+D+ ++E+ D
Sbjct: 427 DDQDDDDEDDDDDDEEDEAGEEEDED 350
Score = 31.6 bits (70), Expect = 0.76
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 6 DTEAIDDDDDDEDDDDTDDEETDEE 30
D + D+DDDD+D++D EE DE+
Sbjct: 424 DQDDDDEDDDDDDEEDEAGEEEDED 350
Score = 31.6 bits (70), Expect = 0.76
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 6 DTEAIDDDDDDEDDDDTDDEETDEELYE 33
+ E D DD D+DD+D DD++ ++E E
Sbjct: 448 EDEDEDGDDQDDDDEDDDDDDEEDEAGE 365
Score = 31.2 bits (69), Expect = 0.99
Identities = 12/28 (42%), Positives = 20/28 (70%)
Frame = -3
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
ED D + DD+DDD+DD++ + E ++E
Sbjct: 436 EDGDDQDDDDEDDDDDDEEDEAGEEEDE 353
Score = 30.8 bits (68), Expect = 1.3
Identities = 12/27 (44%), Positives = 19/27 (69%)
Frame = -3
Query: 8 EAIDDDDDDEDDDDTDDEETDEELYEA 34
E +D+D D+ DDD +D++ D+E EA
Sbjct: 451 EEDEDEDGDDQDDDDEDDDDDDEEDEA 371
Score = 29.6 bits (65), Expect = 2.9
Identities = 10/28 (35%), Positives = 20/28 (70%)
Frame = -3
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
E+ + + +D DD +DDD+ DD++ +E+
Sbjct: 460 ENGEEDEDEDGDDQDDDDEDDDDDDEED 377
>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;} , partial (46%)
Length = 902
Score = 38.1 bits (87), Expect = 0.008
Identities = 15/28 (53%), Positives = 21/28 (74%)
Frame = +2
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
+D D ++ DD DDDED+D+ D+EE EE
Sbjct: 479 DDDDNDSDDDSDDDEDEDEEDEEEQGEE 562
Score = 33.9 bits (76), Expect = 0.15
Identities = 11/28 (39%), Positives = 22/28 (78%)
Frame = +2
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
+++ +A DD+D++EDDDD + ++ D+E
Sbjct: 311 DEVVDDAEDDEDEEEDDDDDEGDDNDDE 394
Score = 33.5 bits (75), Expect = 0.20
Identities = 12/27 (44%), Positives = 19/27 (69%)
Frame = +2
Query: 4 DIDTEAIDDDDDDEDDDDTDDEETDEE 30
D+ DDDD++ DDD+DD+E ++E
Sbjct: 455 DVQRGGEPDDDDNDSDDDSDDDEDEDE 535
Score = 33.5 bits (75), Expect = 0.20
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 6 DTEAIDDDDDDEDDDDTDDEETD 28
D E ++DDDD++ DD DDEE D
Sbjct: 335 DDEDEEEDDDDDEGDDNDDEEDD 403
Score = 32.7 bits (73), Expect = 0.34
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 1 MSEDIDTEAIDDDDDDEDDDDTDDEETDEE 30
+ E +D D+D++++DDDD D+ DEE
Sbjct: 308 VDEVVDDAEDDEDEEEDDDDDEGDDNDDEE 397
Score = 32.0 bits (71), Expect = 0.58
Identities = 11/29 (37%), Positives = 22/29 (74%)
Frame = +2
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEEL 31
+D D++ DDD+DED++D +++ +E+L
Sbjct: 485 DDNDSDDDSDDDEDEDEEDEEEQGEEEDL 571
Score = 32.0 bits (71), Expect = 0.58
Identities = 17/40 (42%), Positives = 22/40 (54%), Gaps = 11/40 (27%)
Frame = +2
Query: 2 SEDIDTEAIDDDDDDEDDD-----------DTDDEETDEE 30
+ED + E DDDDD+ DD+ D DD+E DEE
Sbjct: 329 AEDDEDEEEDDDDDEGDDNDDEEDDAPDGGDDDDDEDDEE 448
Score = 30.8 bits (68), Expect = 1.3
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 8 EAIDDDDDDEDDDDTDDEETDEE 30
E DDD+D +DD D DDE+ DEE
Sbjct: 473 EPDDDDNDSDDDSD-DDEDEDEE 538
Score = 30.8 bits (68), Expect = 1.3
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 6 DTEAIDDDDDDEDDDDTDDEETDEE 30
D E +D+++D+DDD+ DD + +E+
Sbjct: 326 DAEDDEDEEEDDDDDEGDDNDDEED 400
Score = 30.4 bits (67), Expect = 1.7
Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +2
Query: 3 EDIDTEAIDDDDDDEDD-DDTDDEETDE 29
E +D E +DD +DDED+ +D DD+E D+
Sbjct: 302 ESVD-EVVDDAEDDEDEEEDDDDDEGDD 382
Score = 29.3 bits (64), Expect = 3.8
Identities = 14/36 (38%), Positives = 22/36 (60%), Gaps = 7/36 (19%)
Frame = +2
Query: 3 EDIDTEAIDDDDDDEDD-------DDTDDEETDEEL 31
ED D + DD+DD+EDD DD +D+E + ++
Sbjct: 353 EDDDDDEGDDNDDEEDDAPDGGDDDDDEDDEEEGDV 460
>TC215450 similar to UP|P93488 (P93488) NAP1Ps, partial (30%)
Length = 672
Score = 37.4 bits (85), Expect = 0.014
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +3
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
+D D E DD++++ED+DD DDE+ +EE
Sbjct: 222 DDEDIEEDDDEEEEEDEDDDDDEDDEEE 305
Score = 37.0 bits (84), Expect = 0.018
Identities = 16/32 (50%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Frame = +3
Query: 1 MSEDIDTEAIDDDDDDED--DDDTDDEETDEE 30
+ +D D E I++DDD+E+ D+D DD+E DEE
Sbjct: 207 LEDDEDDEDIEEDDDEEEEEDEDDDDDEDDEE 302
Score = 33.5 bits (75), Expect = 0.20
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +3
Query: 1 MSEDIDTEAIDDDDDDEDDDDTDDEETDEE 30
+ ED D E +D+DDD+D+DD ++ +T ++
Sbjct: 234 IEEDDDEEEEEDEDDDDDEDDEEESKTKKK 323
Score = 30.4 bits (67), Expect = 1.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 6 DTEAIDDDDDDEDDDDTDDEETDEE 30
D E +DD+D E+DDD ++EE +++
Sbjct: 204 DLEDDEDDEDIEEDDDEEEEEDEDD 278
Score = 29.3 bits (64), Expect = 3.8
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
E I + D +DDEDD+D ++++ +EE
Sbjct: 177 EAIQGDEFGDLEDDEDDEDIEEDDDEEE 260
>TC215201 similar to UP|Q70Z19 (Q70Z19) Nucleosome assembly protein 1-like
protein 1, partial (55%)
Length = 904
Score = 37.4 bits (85), Expect = 0.014
Identities = 15/28 (53%), Positives = 21/28 (74%)
Frame = +3
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
EDID DD++ DED+D+ +DEE +EE
Sbjct: 498 EDIDEVDYDDEEGDEDEDEDEDEEEEEE 581
Score = 29.3 bits (64), Expect = 3.8
Identities = 9/25 (36%), Positives = 20/25 (80%)
Frame = +3
Query: 6 DTEAIDDDDDDEDDDDTDDEETDEE 30
D E +D+D+DED+++ ++EE +++
Sbjct: 525 DEEGDEDEDEDEDEEEEEEEEEEKK 599
>TC215449 similar to UP|P93488 (P93488) NAP1Ps, partial (97%)
Length = 1495
Score = 37.4 bits (85), Expect = 0.014
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +2
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
+D D E DD++++ED+DD DDE+ +EE
Sbjct: 1055 DDEDIEEDDDEEEEEDEDDDDDEDDEEE 1138
Score = 37.0 bits (84), Expect = 0.018
Identities = 16/32 (50%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Frame = +2
Query: 1 MSEDIDTEAIDDDDDDED--DDDTDDEETDEE 30
+ +D D E I++DDD+E+ D+D DD+E DEE
Sbjct: 1040 LEDDEDDEDIEEDDDEEEEEDEDDDDDEDDEE 1135
Score = 33.5 bits (75), Expect = 0.20
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2
Query: 1 MSEDIDTEAIDDDDDDEDDDDTDDEETDEE 30
+ ED D E +D+DDD+D+DD ++ +T ++
Sbjct: 1067 IEEDDDEEEEEDEDDDDDEDDEEESKTKKK 1156
Score = 30.4 bits (67), Expect = 1.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 6 DTEAIDDDDDDEDDDDTDDEETDEE 30
D E +DD+D E+DDD ++EE +++
Sbjct: 1037 DLEDDEDDEDIEEDDDEEEEEDEDD 1111
Score = 29.3 bits (64), Expect = 3.8
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
E I + D +DDEDD+D ++++ +EE
Sbjct: 1010 EAIQGDEFGDLEDDEDDEDIEEDDDEEE 1093
>TC204850 similar to GB|AAM16178.1|20334844|AY094022 AT3g12390/T2E22_130
{Arabidopsis thaliana;} , partial (85%)
Length = 878
Score = 37.0 bits (84), Expect = 0.018
Identities = 16/26 (61%), Positives = 18/26 (68%)
Frame = +1
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETD 28
ED D E +DDDDDDEDDD + E D
Sbjct: 130 EDDDDEEVDDDDDDEDDDHDEGLEGD 207
Score = 35.4 bits (80), Expect = 0.052
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 6 DTEAIDDDDDDEDDDDTDDEETDEE 30
D ++DDDD+E DDD DDE+ D +
Sbjct: 115 DEPVVEDDDDEEVDDDDDDEDDDHD 189
Score = 33.9 bits (76), Expect = 0.15
Identities = 13/24 (54%), Positives = 18/24 (74%)
Frame = +1
Query: 6 DTEAIDDDDDDEDDDDTDDEETDE 29
D E + +DDDDE+ DD DD+E D+
Sbjct: 112 DDEPVVEDDDDEEVDDDDDDEDDD 183
Score = 29.3 bits (64), Expect = 3.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 1 MSEDIDTEAIDDDDDDEDDDD 21
+ +D D E DDDDD++DD D
Sbjct: 127 VEDDDDEEVDDDDDDEDDDHD 189
>TC218918 UP|Q39892 (Q39892) Nucleosome assembly protein 1, complete
Length = 1507
Score = 36.6 bits (83), Expect = 0.024
Identities = 12/28 (42%), Positives = 23/28 (81%)
Frame = +1
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
ED++ + +++D+DED+D+ DDE+ D+E
Sbjct: 994 EDLEDDEDEEEDEDEDEDEEDDEDEDDE 1077
Score = 35.0 bits (79), Expect = 0.069
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +1
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDE 29
++ + E D+D+D+EDD+D DDEE D+
Sbjct: 1009 DEDEEEDEDEDEDEEDDEDEDDEEEDD 1089
Score = 32.7 bits (73), Expect = 0.34
Identities = 12/28 (42%), Positives = 21/28 (74%)
Frame = +1
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
ED D + ++DD+DEDD++ DD +T ++
Sbjct: 1024 EDEDEDEDEEDDEDEDDEEEDDTKTKKK 1107
Score = 30.8 bits (68), Expect = 1.3
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +1
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEET 27
E+ D + +D++DDED+DD ++++T
Sbjct: 1018 EEEDEDEDEDEEDDEDEDDEEEDDT 1092
Score = 29.6 bits (65), Expect = 2.9
Identities = 10/23 (43%), Positives = 18/23 (77%)
Frame = +1
Query: 8 EAIDDDDDDEDDDDTDDEETDEE 30
+ +D +DDED+++ +DE+ DEE
Sbjct: 985 DEFEDLEDDEDEEEDEDEDEDEE 1053
>TC210126 similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23), partial
(7%)
Length = 735
Score = 36.2 bits (82), Expect = 0.031
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +3
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
+D D + +DDDD ED+++ +DEE DEE
Sbjct: 489 DDDDNDNEEDDDDGEDEEEEEDEEEDEE 572
Score = 33.1 bits (74), Expect = 0.26
Identities = 15/24 (62%), Positives = 18/24 (74%), Gaps = 4/24 (16%)
Frame = +3
Query: 11 DDDDDD----EDDDDTDDEETDEE 30
DDDDDD EDDDD +DEE +E+
Sbjct: 483 DDDDDDNDNEEDDDDGEDEEEEED 554
Score = 30.0 bits (66), Expect = 2.2
Identities = 12/28 (42%), Positives = 21/28 (74%)
Frame = +3
Query: 3 EDIDTEAIDDDDDDEDDDDTDDEETDEE 30
+D D E DDDD ++++++ D+EE +EE
Sbjct: 495 DDNDNEE-DDDDGEDEEEEEDEEEDEEE 575
Score = 30.0 bits (66), Expect = 2.2
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 11 DDDDDDEDDDDTDDEETDEE 30
D D+DDED D DD+ DEE
Sbjct: 354 DGDEDDEDGHDQDDDGEDEE 413
Score = 30.0 bits (66), Expect = 2.2
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +3
Query: 2 SEDIDTEAIDDDDD--DEDDDDTDDEETDEE 30
+ED D + +DD+D D+DDD D+E + EE
Sbjct: 336 TEDDDKDGDEDDEDGHDQDDDGEDEEFSGEE 428
Score = 28.1 bits (61), Expect = 8.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 4 DIDTEAIDDDDDDEDDDDTDDEETDEE 30
D D E D DDD +D++ EE DEE
Sbjct: 360 DEDDEDGHDQDDDGEDEEFSGEEGDEE 440
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.326 0.140 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,655,233
Number of Sequences: 63676
Number of extensions: 262460
Number of successful extensions: 5347
Number of sequences better than 10.0: 158
Number of HSP's better than 10.0 without gapping: 2383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3733
length of query: 447
length of database: 12,639,632
effective HSP length: 100
effective length of query: 347
effective length of database: 6,272,032
effective search space: 2176395104
effective search space used: 2176395104
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Medicago: description of AC146551.12