BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146551.11 + phase: 0
(339 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC232865 55 3e-08
TC213569 52 3e-07
TC210410 49 3e-06
AW317295 45 5e-05
BM528621 weakly similar to SP|Q9FPQ6|GP1_C Vegetative cell wall ... 40 0.002
AW620708 35 0.049
TC203677 similar to UP|Q8IP68 (Q8IP68) CG31813-PA, partial (14%) 34 0.083
TC226922 similar to UP|Q9LPQ3 (Q9LPQ3) F15H18.14, partial (54%) 34 0.11
TC219518 similar to UP|Q9FYT8 (Q9FYT8) Cyclin-dependent kinase B... 34 0.11
TC212163 similar to UP|Q9LT26 (Q9LT26) Arabidopsis thaliana geno... 33 0.14
BM954311 weakly similar to GP|21322711|e pherophorin-dz1 protein... 33 0.14
TC227782 33 0.14
TC224898 similar to UP|RR9_ARATH (Q9XJ27) 30S ribosomal protein ... 33 0.14
TC205446 weakly similar to UP|Q8LCN5 (Q8LCN5) Arabinogalactan-pr... 33 0.14
TC231625 similar to UP|Q84XK6 (Q84XK6) Peroxisomal targeting sig... 33 0.14
TC225877 similar to UP|Q9FIC1 (Q9FIC1) Gb|AAF19567.1, partial (49%) 33 0.24
TC208362 weakly similar to UP|O64835 (O64835) Expressed protein ... 33 0.24
BQ080060 homologue to PIR|C29356|C29 hydroxyproline-rich glycopr... 33 0.24
TC224762 homologue to UP|Q09085 (Q09085) Hydroxyproline-rich gly... 33 0.24
TC228704 similar to UP|Q9FJ12 (Q9FJ12) Arabidopsis thaliana geno... 32 0.31
>TC232865
Length = 920
Score = 55.5 bits (132), Expect = 3e-08
Identities = 64/322 (19%), Positives = 116/322 (35%), Gaps = 3/322 (0%)
Frame = +2
Query: 5 QQENNRGKGKDKDGYVAWTMEETSELLYLLVDAINRGLRDANGSFSKQNVERAILPQLNA 64
QQE +R K WT T L L+VD +++G + N F+K+ + I +
Sbjct: 119 QQEQSRAK---------WTTSLTKILAALMVDQVHKGNKH-NNLFNKK-AWKYICDEFYK 265
Query: 65 KTESHKTYNHYLSRMKWFRNQYNKMSTFMRNNSGFGWDSVAKTYTATEEVWNNYLKSHPS 124
KT +R R QY + + + + S F WD + TA +E+W Y+K HP
Sbjct: 266 KTGLKWDKEQLKNRYSVLRRQYTIVKSIL-DQSDFSWDEATGSITANDEIWAEYIKKHPD 442
Query: 125 HKNLQGKSMIDYDYLKIVVGGGVSSGNNSIALDPEDTDATTFEQESESFGMEDFSYDPNS 184
+ V +G SI + T F + S + E F+
Sbjct: 443 AET-------------------VKTGGCSIFKEL----CTIFSEPSTNGKHEYFAASKGE 553
Query: 185 DTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSEAPIEKRNRHKRNRSEYERSSG 244
T+ P P P + E+ E ++ N + + +
Sbjct: 554 HTY----------------------TTPCPEPLNTHQEESSSESQDEEDANDLQTVQPTT 667
Query: 245 VVGINNQGPAMENLSSSIGTIVVHFEKMSNMMEKREKDRELKNNIWDIIKDI---PNLDD 301
I+ + + + +I + S M + + + ++ D I+D+ +D
Sbjct: 668 PTAISTRKRGRKGIDDAIADAIFEMASASKMRAAAIEQQIARFSMADCIRDLDLMQGVDQ 847
Query: 302 KTRFKIAELMKSKANKDLFLKM 323
+ F EL +++FL +
Sbjct: 848 QLYFAALELFDKHXAREIFLSL 913
>TC213569
Length = 338
Score = 52.4 bits (124), Expect = 3e-07
Identities = 25/80 (31%), Positives = 44/80 (54%)
Frame = -3
Query: 65 KTESHKTYNHYLSRMKWFRNQYNKMSTFMRNNSGFGWDSVAKTYTATEEVWNNYLKSHPS 124
K + + T H +R++ ++ QY + M SGF WD K A + VW Y+K +P
Sbjct: 336 KFQLYLTKEHVKNRLRTWKKQYAILKELM-TQSGFEWDEKRKMVIANDSVWTEYIKKNPD 160
Query: 125 HKNLQGKSMIDYDYLKIVVG 144
+ L+G+ + +Y+ L I++G
Sbjct: 159 ARILKGRVIRNYNELCIILG 100
>TC210410
Length = 825
Score = 48.9 bits (115), Expect = 3e-06
Identities = 53/265 (20%), Positives = 103/265 (38%), Gaps = 3/265 (1%)
Frame = +3
Query: 72 YNHYLSRMKWFRNQYNKMSTFMRNNSGFGWDSVAKTYTATEEVWNNYLKSHPSHKNLQGK 131
Y + +R + ++ + + ++G GWD KT A++E W ++ P + +
Sbjct: 15 YKQFRNRWDSLKKEWQLWAKLIGKDTGLGWDGEKKTIAASDEWWEAKIQEDPEVAKFREQ 194
Query: 132 SMIDYDYLKIVVGGGVSSGNNSIALDPEDTDATTFEQESESFGMEDFSYDPNSDTFIAPD 191
+ ++ + G +++G + A ED+ ++ E F + N D D
Sbjct: 195 GLKFLPEMEFLFKGTIATGFAAYA-PSEDS------RQYEGFNTRTEETNDNID-----D 338
Query: 192 NYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSEAPIEKRNRHKRNRSEYERSSGVVGINNQ 251
N + P + T + + K N ++ E ++ GV
Sbjct: 339 NTDMEVNEPEIDTTTQNTSS---------------AKENGQRKRGREGDKRIGVAA---- 461
Query: 252 GPAMENLSSSIGTIVVHFEKMSNMMEKREKDRELKNNIWDIIKDIPNLD--DKTRFKIAE 309
LSS + I+ FE + + + +KD+P L+ + +K +
Sbjct: 462 -----KLSSQLDRIIQTFESSVSAQDPTSITACVAK-----LKDLPGLECGSELFYKATK 611
Query: 310 LMKSKANKDLFLKM-SPEDRLSWIK 333
LMK +AN F+ + PE +L WIK
Sbjct: 612 LMKKRANMITFVALEEPELQLGWIK 686
>AW317295
Length = 358
Score = 45.1 bits (105), Expect = 5e-05
Identities = 30/119 (25%), Positives = 52/119 (43%)
Frame = +2
Query: 30 LLYLLVDAINRGLRDANGSFSKQNVERAILPQLNAKTESHKTYNHYLSRMKWFRNQYNKM 89
LL L++ +++G + G + ++ Q N K +R K FR QYN M
Sbjct: 8 LLELVLSHVHKG--NKTGKVFSRQAWVDMIKQFNTKFGFKYDVEVLKNRHKRFRKQYNDM 181
Query: 90 STFMRNNSGFGWDSVAKTYTATEEVWNNYLKSHPSHKNLQGKSMIDYDYLKIVVGGGVS 148
+ G WD A ++ W+ +K+HP + + + + YD L I+ G V+
Sbjct: 182 KMIV-GQKGLQWDGTQNMIVADDKAWDECIKAHPDAQPFKKRVIPYYDDLCIINGHAVA 355
>BM528621 weakly similar to SP|Q9FPQ6|GP1_C Vegetative cell wall protein gp1
precursor (Hydroxyproline-rich glycoprotein 1)., partial
(8%)
Length = 429
Score = 39.7 bits (91), Expect = 0.002
Identities = 19/44 (43%), Positives = 26/44 (58%), Gaps = 1/44 (2%)
Frame = +1
Query: 195 PAYQPPSPNQPTPS-PNQPTPSPHFSLNSEAPIEKRNRHKRNRS 237
P+ +PPSP P P+ P+ PTPSP + P + +RH R RS
Sbjct: 121 PSPRPPSPPSPPPTAPSSPTPSPPSTTPLPIPSQHNHRHLRRRS 252
>AW620708
Length = 436
Score = 35.0 bits (79), Expect = 0.049
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +3
Query: 95 NNSGFGWDSVAKTYTATEEVWNNYLKSHP---SHKN 127
++S F W+ +T A ++VW+ Y+K HP S+KN
Sbjct: 132 SHSEFAWNETLQTINAEDDVWDAYIKDHPDAISYKN 239
>TC203677 similar to UP|Q8IP68 (Q8IP68) CG31813-PA, partial (14%)
Length = 1446
Score = 34.3 bits (77), Expect = 0.083
Identities = 14/30 (46%), Positives = 18/30 (59%)
Frame = -2
Query: 186 TFIAPDNYEPAYQPPSPNQPTPSPNQPTPS 215
T P N +++PPS +PT SP PTPS
Sbjct: 1238 TIPTPFNQSASWKPPSTTEPTKSPRAPTPS 1149
>TC226922 similar to UP|Q9LPQ3 (Q9LPQ3) F15H18.14, partial (54%)
Length = 1190
Score = 33.9 bits (76), Expect = 0.11
Identities = 14/36 (38%), Positives = 20/36 (54%)
Frame = +2
Query: 182 PNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPH 217
P+S T P + P+ PPS +PSP+ P P P+
Sbjct: 77 PSSATAATPTSVSPSRSPPSAASASPSPSLPPPPPN 184
Score = 27.7 bits (60), Expect = 7.7
Identities = 14/37 (37%), Positives = 18/37 (47%), Gaps = 3/37 (8%)
Frame = +2
Query: 195 PAYQPPSPNQPTPSPNQP---TPSPHFSLNSEAPIEK 228
P+ PP PNQP +P P SP + + AP K
Sbjct: 158 PSLPPPPPNQPPATPLPPPTSRSSPSLATETAAPSTK 268
>TC219518 similar to UP|Q9FYT8 (Q9FYT8) Cyclin-dependent kinase B1-2,
complete
Length = 1333
Score = 33.9 bits (76), Expect = 0.11
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +3
Query: 178 FSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
FS+ PN T A + PSP P P+ P+PSP F+L S
Sbjct: 168 FSFSPNPSTSSASSPSNTLTRSPSPRNPPPT---PSPSPSFTLFS 293
>TC212163 similar to UP|Q9LT26 (Q9LT26) Arabidopsis thaliana genomic DNA,
chromosome 3, P1 clone: MPN9, partial (30%)
Length = 739
Score = 33.5 bits (75), Expect = 0.14
Identities = 17/45 (37%), Positives = 23/45 (50%), Gaps = 1/45 (2%)
Frame = -2
Query: 193 YEPAYQPPSPNQPTP-SPNQPTPSPHFSLNSEAPIEKRNRHKRNR 236
Y P+ P+P PTP +P+ PSP + +S AP R R R
Sbjct: 420 YTPSTASPTPCSPTPPTPSSANPSPEAARSSLAPAATRQARPRRR 286
>BM954311 weakly similar to GP|21322711|e pherophorin-dz1 protein {Volvox
carteri f. nagariensis}, partial (9%)
Length = 406
Score = 33.5 bits (75), Expect = 0.14
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 7/37 (18%)
Frame = +2
Query: 190 PDNYEPAYQPPSPN---QPTPSPNQ----PTPSPHFS 219
P+NY P + PPSP+ P P P+Q P P HF+
Sbjct: 56 PNNYFPTFPPPSPSHPFNPPPPPSQSFYPPPPPSHFN 166
Score = 29.6 bits (65), Expect = 2.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 190 PDNYEPAYQPPSPNQPTPSPNQPT 213
P P PP+P P+PSPN PT
Sbjct: 320 PRPVRPPPLPPAPLPPSPSPNNPT 391
Score = 28.9 bits (63), Expect = 3.5
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Frame = +2
Query: 179 SYDPNS--DTFIAPDNYEPAYQPPSPNQ---PTPSP---NQPTPSPH 217
S PN+ TF P P PP P+Q P P P N P P PH
Sbjct: 47 STQPNNYFPTFPPPSPSHPFNPPPPPSQSFYPPPPPSHFNPPPPPPH 187
>TC227782
Length = 460
Score = 33.5 bits (75), Expect = 0.14
Identities = 26/97 (26%), Positives = 42/97 (42%), Gaps = 7/97 (7%)
Frame = +3
Query: 194 EPAYQPPSPNQPTPSPNQPTPSPHFSLNSEAPIEKRNRHKRNRSEYERSSGVVGINNQGP 253
+PA+ P + N P+P P+Q PH N + S ++SS + +N+
Sbjct: 168 DPAFFPNNLNTPSPPPHQFQQLPH-------ETSSFNVTNQETSCVDQSSKITISDNEPS 326
Query: 254 AMENLSSSIGTIVVHFE-------KMSNMMEKREKDR 283
ENLS +V E K++ +EK+ K R
Sbjct: 327 VTENLSPQSSMVVDKLETGEQVTQKVNTPVEKKRKTR 437
>TC224898 similar to UP|RR9_ARATH (Q9XJ27) 30S ribosomal protein S9,
chloroplast precursor, partial (79%)
Length = 1076
Score = 33.5 bits (75), Expect = 0.14
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +3
Query: 180 YDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSEAPIEKRNRHKRNRSEY 239
+ P+ TF P+ P PN P+PSP++ +P P +S P + + K +R+
Sbjct: 87 HSPSLPTFPRDQTLSPS---PEPN-PSPSPSRASPKPPPPSSSPPPHSRNRKPKTSRTTS 254
Query: 240 ERSSGV 245
R S V
Sbjct: 255 SRGSQV 272
>TC205446 weakly similar to UP|Q8LCN5 (Q8LCN5) Arabinogalactan-protein,
partial (39%)
Length = 668
Score = 33.5 bits (75), Expect = 0.14
Identities = 32/105 (30%), Positives = 42/105 (39%), Gaps = 10/105 (9%)
Frame = +1
Query: 152 NSIALDPEDTDATTFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQ 211
+S AL P+ T Q+S S + + P+S AP P+ P S + P P
Sbjct: 133 SSPALSPKRTPVLATPQKSPSPAISPSAVSPSSSP-PAPTVNAPSPSPTSVDSPPSPPLS 309
Query: 212 P----------TPSPHFSLNSEAPIEKRNRHKRNRSEYERSSGVV 246
P TPS S SEAP +N NR S+ VV
Sbjct: 310 PSDSPAGVPSVTPSAISSPPSEAPAPSQNGAALNRFTVAGSAAVV 444
>TC231625 similar to UP|Q84XK6 (Q84XK6) Peroxisomal targeting signal type 2
receptor, partial (33%)
Length = 441
Score = 33.5 bits (75), Expect = 0.14
Identities = 22/65 (33%), Positives = 27/65 (40%), Gaps = 10/65 (15%)
Frame = +3
Query: 161 TDATTFEQESESFGMEDFSYDPN-----SDTFIAPDNYEPAYQPPSPNQPT-----PSPN 210
T A+T S S+ P S T+ P+ P+ PPSP P PSP
Sbjct: 222 TAASTSSTSPRSLPSPSLSWSPTTPPTASTTWPGPNPTTPSSSPPSPTAPLSSTTWPSPQ 401
Query: 211 QPTPS 215
PTPS
Sbjct: 402 PPTPS 416
>TC225877 similar to UP|Q9FIC1 (Q9FIC1) Gb|AAF19567.1, partial (49%)
Length = 1850
Score = 32.7 bits (73), Expect = 0.24
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 19/143 (13%)
Frame = +2
Query: 117 NYLKSHPSHKNLQGKSMIDYDYLKIV---VGGGVSSGNNSIALDPEDTDATTFEQESESF 173
N L+ HPS+ + ++ + +IV V G+N++ D + + Q
Sbjct: 803 NRLRKHPSNDLRRLVKLLVRKWKEIVDEWVKLNPRGGSNTLMADGDSSPVQKTTQNGHHQ 982
Query: 174 GMEDFSYDPN-------SDTFIAPDNYEPAYQPPSPNQP--TPSPNQPTPSP-------H 217
+ DF+Y PN SD + +P P S +P PSP+ TP+
Sbjct: 983 QIPDFAYSPNPHNGSSGSDRNNSEAERKPKVVPRSEPRPKHAPSPSVSTPASATQNRQRE 1162
Query: 218 FSLNSEAPIEKRNRHKRNRSEYE 240
S ++E R R + N E E
Sbjct: 1163SSFDAERLASARRRLQENYKEAE 1231
>TC208362 weakly similar to UP|O64835 (O64835) Expressed protein
(At2g23670/F26B6.32), partial (72%)
Length = 805
Score = 32.7 bits (73), Expect = 0.24
Identities = 14/27 (51%), Positives = 15/27 (54%)
Frame = -2
Query: 190 PDNYEPAYQPPSPNQPTPSPNQPTPSP 216
P + P PSP PTPSP P PSP
Sbjct: 390 PQSPSPLPLSPSPPPPTPSPPSPAPSP 310
Score = 31.6 bits (70), Expect = 0.54
Identities = 11/29 (37%), Positives = 19/29 (64%)
Frame = -2
Query: 189 APDNYEPAYQPPSPNQPTPSPNQPTPSPH 217
+P P+ PP+P+ P+P+P+ P P P+
Sbjct: 378 SPLPLSPSPPPPTPSPPSPAPSPPPPIPY 292
Score = 30.0 bits (66), Expect = 1.6
Identities = 17/36 (47%), Positives = 18/36 (49%)
Frame = -2
Query: 190 PDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSEAP 225
P N P Q PSP +PSP PTPSP S P
Sbjct: 408 PQNSPPP-QSPSPLPLSPSPPPPTPSPPSPAPSPPP 304
Score = 30.0 bits (66), Expect = 1.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 189 APDNYEPAYQPPSPNQPTPSPNQPTPSP 216
+P P+ P SP+ P P+P+ P+P+P
Sbjct: 399 SPPPQSPSPLPLSPSPPPPTPSPPSPAP 316
Score = 28.1 bits (61), Expect = 5.9
Identities = 11/29 (37%), Positives = 15/29 (50%)
Frame = -2
Query: 188 IAPDNYEPAYQPPSPNQPTPSPNQPTPSP 216
+ P + +P PP P PTP + P SP
Sbjct: 465 LQPKSQKPPLPPPLPPAPTPQNSPPPQSP 379
Score = 27.7 bits (60), Expect = 7.7
Identities = 12/31 (38%), Positives = 15/31 (47%)
Frame = -2
Query: 195 PAYQPPSPNQPTPSPNQPTPSPHFSLNSEAP 225
P QP S P P P P P+P S ++P
Sbjct: 471 PPLQPKSQKPPLPPPLPPAPTPQNSPPPQSP 379
>BQ080060 homologue to PIR|C29356|C29 hydroxyproline-rich glycoprotein (clone
Hyp2.13) - kidney bean (fragment), partial (38%)
Length = 422
Score = 32.7 bits (73), Expect = 0.24
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Frame = +1
Query: 182 PNSDTFIAPDNYEPAYQPPSPNQP------TPSPNQPTPSPHFSLNSEAP 225
P D P Y + PPSP+ P +P P P+P PH+ S P
Sbjct: 94 PPPDPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPHYYYKSPPP 243
Score = 27.7 bits (60), Expect = 7.7
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 6/42 (14%)
Frame = +1
Query: 190 PDNYEPAYQPPSPNQP------TPSPNQPTPSPHFSLNSEAP 225
P Y + PPSP+ P +P P P+P P + S P
Sbjct: 166 PPYYYKSPPPPSPSPPPHYYYKSPPPPDPSPPPPYYYRSPPP 291
>TC224762 homologue to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (38%)
Length = 422
Score = 32.7 bits (73), Expect = 0.24
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Frame = +2
Query: 182 PNSDTFIAPDNYEPAYQPPSPNQP------TPSPNQPTPSPHFSLNSEAP 225
P D P Y + PPSP+ P +P P P+P PH+ S P
Sbjct: 83 PPPDPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPHYYYKSPPP 232
Score = 29.3 bits (64), Expect = 2.7
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +2
Query: 182 PNSDTFIAPDNYEPAYQPPSPNQPTP----SPNQPTPSP 216
P D P Y + PPSP+ P P SP P+PSP
Sbjct: 227 PPPDPSPPPPYYYRSPPPPSPSPPPPYYYKSPPPPSPSP 343
Score = 28.5 bits (62), Expect = 4.5
Identities = 15/39 (38%), Positives = 18/39 (45%), Gaps = 4/39 (10%)
Frame = +2
Query: 182 PNSDTFIAPDNYEPAYQPPSPNQPTP----SPNQPTPSP 216
P D P Y + PP P+ P P SP P+PSP
Sbjct: 35 PPPDPSPPPSYYYKSPPPPDPSPPPPYYYKSPPPPSPSP 151
Score = 27.7 bits (60), Expect = 7.7
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 6/42 (14%)
Frame = +2
Query: 190 PDNYEPAYQPPSPNQP------TPSPNQPTPSPHFSLNSEAP 225
P Y + PPSP+ P +P P P+P P + S P
Sbjct: 155 PPYYYKSPPPPSPSPPPHYYYKSPPPPDPSPPPPYYYRSPPP 280
>TC228704 similar to UP|Q9FJ12 (Q9FJ12) Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone:K21P3 (Extensin like protein),
partial (42%)
Length = 1003
Score = 32.3 bits (72), Expect = 0.31
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +3
Query: 153 SIALDPEDTDATTFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQ- 211
S+A+ ED+D ++ S + + + P N P+ PPSP P+PS N
Sbjct: 174 SVAMAEEDSDHNKHSLKATSHAQIQCTMCSSCNN---PCNQVPSPPPPSPPPPSPSTNNC 344
Query: 212 -PTPSP 216
P PSP
Sbjct: 345 PPPPSP 362
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.311 0.129 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,906,169
Number of Sequences: 63676
Number of extensions: 242341
Number of successful extensions: 6339
Number of sequences better than 10.0: 264
Number of HSP's better than 10.0 without gapping: 3310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5265
length of query: 339
length of database: 12,639,632
effective HSP length: 98
effective length of query: 241
effective length of database: 6,399,384
effective search space: 1542251544
effective search space used: 1542251544
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Medicago: description of AC146551.11