BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146549.3 + phase: 0
(461 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC226370 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich pr... 38 0.011
TC206441 36 0.032
TC228734 weakly similar to UP|Q99738 (Q99738) Pinin, partial (4%) 35 0.070
TC225829 weakly similar to UP|Q9C5Q6 (Q9C5Q6) Fasciclin-like ara... 35 0.092
TC221918 weakly similar to UP|Q6H890 (Q6H890) BRAP2-like protein... 35 0.092
TC209348 similar to UP|Q9LSD7 (Q9LSD7) Arabidopsis thaliana geno... 34 0.12
TC219933 weakly similar to UP|Q9EQF1 (Q9EQF1) GABA-A epsilon sub... 34 0.12
BU548739 34 0.16
TC207452 similar to UP|Q9FUA4 (Q9FUA4) SPATULA, partial (31%) 33 0.20
TC214511 weakly similar to PIR|C85356|C85356 glycine-rich protei... 33 0.27
TC214205 weakly similar to UP|P93014 (P93014) 30S ribosomal prot... 33 0.27
TC206560 similar to GB|AAS10008.1|41619036|AY519538 MYB transcri... 33 0.27
TC214054 similar to UP|Q75QC2 (Q75QC2) Glutamate-rich protein, p... 33 0.27
TC211136 UP|Q84VI3 (Q84VI3) Envelope-like protein (Fragment), co... 32 0.78
TC214082 similar to UP|Q75QC2 (Q75QC2) Glutamate-rich protein, p... 32 0.78
BE329858 homologue to GP|11124841|emb envelope glycoprotein gp12... 31 1.0
CO979128 31 1.0
TC215748 similar to GB|AAP37658.1|30725272|BT008299 At2g25430/F1... 31 1.3
TC230287 31 1.3
>TC226370 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich protein,
partial (43%)
Length = 1810
Score = 37.7 bits (86), Expect = 0.011
Identities = 36/155 (23%), Positives = 59/155 (37%), Gaps = 3/155 (1%)
Frame = +2
Query: 170 PTTHPLYPDIPEPVSVQQPEPNQEPNQTP--QRASEVVSEATTSEIPQQQQESSTIHNLE 227
P P P + P Q P Q P + + + A Q S +
Sbjct: 626 PQPQPPAPQVQAQAQAPAPNVTQVPQQPPYYMPPTPLPNPAVPQHPQNQYLPSDQQYRTP 805
Query: 228 KHLGGEMQPTPTKASKT-VPRKTVLENQQTVPEKTVPEQTVPEQDASEQVAPDLQTTSDQ 286
+H+ QPTP++ + + V + + + QQ P++ P+Q +Q S+QV P Q
Sbjct: 806 QHVAP--QPTPSQVTPSPVQQFSHYQQQQQQPQQQQPQQ---QQQWSQQVLP------SQ 952
Query: 287 TTEPEQQPEPPIIDLASDQPSTSHTTQSEPSTIPN 321
+ Q PP ++ T S T+PN
Sbjct: 953 PPPMQSQVRPPSPNVYPPYQPNQATNPSPAETLPN 1057
>TC206441
Length = 989
Score = 36.2 bits (82), Expect = 0.032
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 18/131 (13%)
Frame = +1
Query: 180 PEPVS------VQQPEPNQEPNQTPQRASEVVSEATTSEIPQQQQESSTIHNLEKHLGGE 233
PEPVS V + + E QR E + TS +PQ +ES ++ E
Sbjct: 130 PEPVSTPVAAEVDESQKEPEKQSLEQRVEE--EKPDTSVVPQHSEESGDATEVKTREQNE 303
Query: 234 MQPTPTKASKTVPRKTVLENQQTVPEKTVPE-----------QTVPEQDASEQVAPDL-Q 281
+ T+A+++V V+++++ +T E +T+ + E V P +
Sbjct: 304 AKAATTEAAESVKVDKVVDDKKEEKTETKVEEISRAINEPVRETLASKFEEESVEPGADK 483
Query: 282 TTSDQTTEPEQ 292
+QT EPE+
Sbjct: 484 VEKEQTVEPEK 516
>TC228734 weakly similar to UP|Q99738 (Q99738) Pinin, partial (4%)
Length = 1156
Score = 35.0 bits (79), Expect = 0.070
Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 1/87 (1%)
Frame = +1
Query: 236 PTPTKASKTVPRKTVLENQQTVPEKTVPEQTVPEQDASEQVA-PDLQTTSDQTTEPEQQP 294
P P +SKT P P +P+ P + P TT+ + T P P
Sbjct: 343 PNPASSSKTPPSTPSTSPPPATPLPPLPQPPTPSPSPCRSPSPPSTPTTASEFTTPNSTP 522
Query: 295 EPPIIDLASDQPSTSHTTQSEPSTIPN 321
PP S P S +T P+
Sbjct: 523 TPPTAASRSPSPPPSPPPTRATATPPS 603
>TC225829 weakly similar to UP|Q9C5Q6 (Q9C5Q6) Fasciclin-like
arabinogalactan-protein 2, partial (57%)
Length = 1652
Score = 34.7 bits (78), Expect = 0.092
Identities = 41/155 (26%), Positives = 58/155 (36%), Gaps = 3/155 (1%)
Frame = +2
Query: 170 PTTHPL-YPDIPE--PVSVQQPEPNQEPNQTPQRASEVVSEATTSEIPQQQQESSTIHNL 226
PTT P +P P P + P P T R S S +T S++
Sbjct: 77 PTTSPACWPHTPASPPSTTTSPSPTWPKRSTAARPSP--SWPSTMPPCPPSSTSTSPSPP 250
Query: 227 EKHLGGEMQPTPTKASKTVPRKTVLENQQTVPEKTVPEQTVPEQDASEQVAPDLQTTSDQ 286
K + T A K+ R T T P + P P + AP +TS
Sbjct: 251 SKTSSPSTSSSTTSAPKSSTRST------TAPPSSPPCSRPP----APPPAPPATSTSP- 397
Query: 287 TTEPEQQPEPPIIDLASDQPSTSHTTQSEPSTIPN 321
T+ P + PP A PSTS+ ++ P+T P+
Sbjct: 398 TSRPARSASPPKTTTAPSTPSTSNPSRKCPTTSPS 502
>TC221918 weakly similar to UP|Q6H890 (Q6H890) BRAP2-like protein, partial
(15%)
Length = 692
Score = 34.7 bits (78), Expect = 0.092
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 3/103 (2%)
Frame = +3
Query: 179 IPEPVSVQQPEPNQEPNQTPQRASEVVSEATTSE---IPQQQQESSTIHNLEKHLGGEMQ 235
IP+P S P PN PN T ++ + +T SE IP+ Q + +
Sbjct: 102 IPKPSSNPNPNPNPNPNPTTLNSANAEAHSTCSEPLPIPRSQPRPLFLLSSSSSPSPTTS 281
Query: 236 PTPTKASKTVPRKTVLENQQTVPEKTVPEQTVPEQDASEQVAP 278
P+ T P TV + E T P+ + +S P
Sbjct: 282 PSTTSFPSVDPTSTV-STTFSSSETTAPKIAIASSSSSPITLP 407
>TC209348 similar to UP|Q9LSD7 (Q9LSD7) Arabidopsis thaliana genomic DNA,
chromosome 3, P1 clone: MOJ10, partial (12%)
Length = 1405
Score = 34.3 bits (77), Expect = 0.12
Identities = 35/119 (29%), Positives = 55/119 (45%), Gaps = 4/119 (3%)
Frame = +2
Query: 183 VSVQQPEPNQEPNQTPQRASEVVSEATTSEIPQQQQESSTIHNL--EKHLGGEMQPTPTK 240
VS Q + E + A+ V ++ T S Q S + +L E +G M+ +
Sbjct: 290 VSFSQKSGHIEEDPRKSAAAAVAAKLTAST-SSAQMLSYVLSSLASEGVIGNPMKES--S 460
Query: 241 ASKTVPRKTVLENQQT--VPEKTVPEQTVPEQDASEQVAPDLQTTSDQTTEPEQQPEPP 297
A ++T LEN Q VP + P+Q +P SE + + TT+ Q+T P + P PP
Sbjct: 461 ADYHSEKRTKLENDQPSFVPSQN-PQQPLPPFPLSESIQHNPPTTNQQST-PNEPPPPP 631
>TC219933 weakly similar to UP|Q9EQF1 (Q9EQF1) GABA-A epsilon subunit splice
variant (Fragment), partial (7%)
Length = 490
Score = 34.3 bits (77), Expect = 0.12
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
Frame = +1
Query: 180 PEPVSVQQPEPNQEPNQTPQRASEVVSEATTSEIPQQQQESSTIHNLEKHLGGEMQPTPT 239
PEP QP+P +P T Q P + +S ++ LE + E +P PT
Sbjct: 157 PEPEPEPQPQPETKPEPTEQTQ------------PHLEPKSESVPELEPNPQPESEPVPT 300
Query: 240 KASKT-VPRKTVLENQQTVPEKTVPEQTVPEQDASEQVAPDLQTTSDQ 286
+ ++ + K+ E V + E T+ +A+ +P + D+
Sbjct: 301 EQTQAPLEPKSGSEADPVVNDADRRETTIHSNEANANPSPTPKLRKDE 444
Score = 32.7 bits (73), Expect = 0.35
Identities = 38/185 (20%), Positives = 71/185 (37%), Gaps = 8/185 (4%)
Frame = +1
Query: 144 YGTLDYESTQIEFSKNRIK--LCEKFNLPTT-HPLYPDIPEPVSVQQPEPNQEPNQTPQR 200
+ + Y + + F +R K LC + ++ + P + ++PEP S EP EP PQ
Sbjct: 4 FSLVQYPRSSLLFDSDRSKTLLCLQSSVSLSLKP*HSEMPEPESQNGHEPAPEPEPEPQ- 180
Query: 201 ASEVVSEATTSEIPQQQQESSTIHNLEKHLGGEMQPTPTKASKTVPRKTVLENQQTVPEK 260
PQ E +P PT +QT P
Sbjct: 181 -------------PQP----------------ETKPEPT--------------EQTQPHL 231
Query: 261 TVPEQTVPEQDASEQVAPDLQTTSDQTTEPEQQPE-----PPIIDLASDQPSTSHTTQSE 315
++VPE + + Q P+ + + T+ +P+ P+++ A + +T H+ ++
Sbjct: 232 EPKSESVPELEPNPQ--PESEPVPTEQTQAPLEPKSGSEADPVVNDADRRETTIHSNEAN 405
Query: 316 PSTIP 320
+ P
Sbjct: 406 ANPSP 420
Score = 28.1 bits (61), Expect = 8.6
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Frame = +1
Query: 248 KTVLENQQTVPEKTVP---EQTVPEQDASEQVAPDLQTTSDQTTEPEQQPEPPIIDLASD 304
KT+L Q +V P E PE + AP+ + EP+ QPE
Sbjct: 58 KTLLCLQSSVSLSLKP*HSEMPEPESQNGHEPAPEPEP------EPQPQPETKPEPTEQT 219
Query: 305 QPSTSHTTQSEPSTIPNYILESE 327
QP ++S P PN ESE
Sbjct: 220 QPHLEPKSESVPELEPNPQPESE 288
>BU548739
Length = 645
Score = 33.9 bits (76), Expect = 0.16
Identities = 27/91 (29%), Positives = 41/91 (44%), Gaps = 10/91 (10%)
Frame = -2
Query: 259 EKTVPEQTVP-----EQDASE-QVAPDLQTTSDQTTEPEQQPEPPIIDLASD----QPST 308
E E TVP E++A E QV ++ T +++ E P P++DL+S PST
Sbjct: 455 EDASSEATVPEPFXXEEEAGETQVRQEVAATPERSREVTSDPSTPVVDLSSP*HVADPST 276
Query: 309 SHTTQSEPSTIPNYILESEYIDEQLIKLSDE 339
E T P L + ++ L+DE
Sbjct: 275 PILKIPEDPTTPILTLNTSPPATHVLHLTDE 183
>TC207452 similar to UP|Q9FUA4 (Q9FUA4) SPATULA, partial (31%)
Length = 1207
Score = 33.5 bits (75), Expect = 0.20
Identities = 24/73 (32%), Positives = 31/73 (41%), Gaps = 8/73 (10%)
Frame = +2
Query: 168 NLPTTH--PLYPDIPEPVSVQQPE------PNQEPNQTPQRASEVVSEATTSEIPQQQQE 219
NLP H P P +P P + PE P + + P + SE E Q Q+
Sbjct: 491 NLPNKHNLPNQPSVPYPPYIDNPETSFGLEPRIQTDMKPLQHKGGSSEPIRGEDILQHQQ 670
Query: 220 SSTIHNLEKHLGG 232
SS IH+ LGG
Sbjct: 671 SSGIHSDANTLGG 709
>TC214511 weakly similar to PIR|C85356|C85356 glycine-rich protein [imported]
- Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(88%)
Length = 1085
Score = 33.1 bits (74), Expect = 0.27
Identities = 23/77 (29%), Positives = 31/77 (39%)
Frame = -3
Query: 170 PTTHPLYPDIPEPVSVQQPEPNQEPNQTPQRASEVVSEATTSEIPQQQQESSTIHNLEKH 229
P P P P P + P+P +EP P ASE E E+ ++ E LE
Sbjct: 747 PPPPPPPPPPPLP*LLPDPDPAREPAYEP--ASEPAPEPPEPELEDEEAELEAELELEPE 574
Query: 230 LGGEMQPTPTKASKTVP 246
E P P A + +P
Sbjct: 573 PEPEPDPAPAPAPEPLP 523
>TC214205 weakly similar to UP|P93014 (P93014) 30S ribosomal protein S5,
partial (16%)
Length = 428
Score = 33.1 bits (74), Expect = 0.27
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 169 LPTTHPLYPDIPEPVSVQQPEPNQEPNQTPQRASEVVSEATTSE 212
L T PLYP P P S+ P PN +P +S ++ S+
Sbjct: 102 LSTPSPLYPSPPPPASLSSLHPPSSPNLSPSSSSTTTLKSKPSD 233
>TC206560 similar to GB|AAS10008.1|41619036|AY519538 MYB transcription factor
{Arabidopsis thaliana;} , partial (38%)
Length = 971
Score = 33.1 bits (74), Expect = 0.27
Identities = 36/164 (21%), Positives = 69/164 (41%), Gaps = 20/164 (12%)
Frame = +1
Query: 65 QALKNKQASGATSSEP--VSKAPEAVHPEAQSSGNSSKPD------------IYTQIQSL 110
+A A+ AT++ P S AP++ +A + ++S+ D I+ + +L
Sbjct: 295 KAFSAPPATTATTATPQNASPAPQSASSDAAVAPDASQNDQDAKNPPRYNALIFEALSAL 474
Query: 111 PSSPSSSST------ESDDQPLSQHIDKLLKTKPTKLTEYGTLDYESTQIEFSKNRIKLC 164
S S E + ++Q+ + L TK +L G L E +N K+
Sbjct: 475 KDSNGSDMNAIIKFMEQKNHQVNQNFKRALSTKLRRLVSQGKL-------EKVQNGYKVK 633
Query: 165 EKFNLPTTHPLYPDIPEPVSVQQPEPNQEPNQTPQRASEVVSEA 208
++ + T P P+P V+ P+P Q+ + ++ + EA
Sbjct: 634 KEASSGTKSPS----PKPKDVRPPQPQQQSPASVLMTNDTIKEA 753
>TC214054 similar to UP|Q75QC2 (Q75QC2) Glutamate-rich protein, partial (68%)
Length = 1306
Score = 33.1 bits (74), Expect = 0.27
Identities = 16/79 (20%), Positives = 33/79 (41%)
Frame = +1
Query: 192 QEPNQTPQRASEVVSEATTSEIPQQQQESSTIHNLEKHLGGEMQPTPTKASKTVPRKTVL 251
+EP + P EVV++ T E P +++ +++ + T T+++ P T
Sbjct: 349 EEPKEVPVETEEVVAKETEEEKPAEEKSEEKTEEVKEEAEEPKETTETESAAAAPPATTE 528
Query: 252 ENQQTVPEKTVPEQTVPEQ 270
E + P + E+
Sbjct: 529 EENKPAESVETPVEVPVEK 585
>TC211136 UP|Q84VI3 (Q84VI3) Envelope-like protein (Fragment), complete
Length = 2043
Score = 31.6 bits (70), Expect = 0.78
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +1
Query: 42 PTPDIAALASELETVQYGATLLSQALKNKQASGATSSEPVSKAPEAVHPEAQSS-GNSSK 100
P+P + + E + +++S LK+ A P S P P+ + SS
Sbjct: 376 PSPATSPREVDTEMDKKIRSIVSSILKDASVPEADEDVPTSSNPNVSVPDVKKDVPTSSA 555
Query: 101 PDIYTQIQSLPSSPSSSSTESDDQ 124
P+ ++LPS STE DDQ
Sbjct: 556 PNA----EALPSPSEEGSTEEDDQ 615
>TC214082 similar to UP|Q75QC2 (Q75QC2) Glutamate-rich protein, partial (34%)
Length = 1032
Score = 31.6 bits (70), Expect = 0.78
Identities = 23/113 (20%), Positives = 44/113 (38%)
Frame = +1
Query: 171 TTHPLYPDIPEPVSVQQPEPNQEPNQTPQRASEVVSEATTSEIPQQQQESSTIHNLEKHL 230
TT + E + ++ +P +EP + EVV++ T E P +++S
Sbjct: 322 TTEAPTTETVETTTTEEAKP-EEPKEVAVETEEVVTKETEEEKPAAEEKS---------- 468
Query: 231 GGEMQPTPTKASKTVPRKTVLENQQTVPEKTVPEQTVPEQDASEQVAPDLQTT 283
E + K P++T ++ P T E+ P + V ++ T
Sbjct: 469 --EEKTEEVKEEAEEPKETTETETESAPAATTEEENKPAETVEAPVEVPVEKT 621
>BE329858 homologue to GP|11124841|emb envelope glycoprotein gp120 {Human
immunodeficiency virus 1}, partial (6%)
Length = 466
Score = 31.2 bits (69), Expect = 1.0
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +1
Query: 258 PEKTVPEQT---VPEQDASEQVAPDLQTTSDQTTEPEQQPEPPIIDLASDQPSTSHTTQS 314
PE V +Q +P QD S+ +A D+ + + Q PE P L SD PS TQS
Sbjct: 163 PEIVVEDQVDKPIPVQDKSD-IAEDVTAAAKEN----QLPEYPESSLTSDDPSKESVTQS 327
Query: 315 E 315
+
Sbjct: 328 D 330
>CO979128
Length = 750
Score = 31.2 bits (69), Expect = 1.0
Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 4/159 (2%)
Frame = -3
Query: 54 ETVQYGATLLSQALKNKQASGATSSEPVSKAPEAVHPEAQSSGNSSKPDIYTQIQSL-PS 112
+ YG T + + L+ A S P + P +A +S +S+P T+ Q+ PS
Sbjct: 571 KAASYGQTRIFEILQYVAAQSTPSPRPAQQQPAMRVRQAATS--NSQPASATEPQAENPS 398
Query: 113 SPSSSSTESDDQPLSQHIDKLLKTKPTKLTEYGTLDYESTQIEFSKNRIKLCEKFNLPTT 172
SP+SSS+ + +++ + T G +S I T
Sbjct: 397 SPTSSSSSQQQKEVAEEELGSSQVPKAPYTVAGLSSQKSNPIP--------------ETA 260
Query: 173 HPLYPDIPEPVSVQQPEPNQ---EPNQTPQRASEVVSEA 208
+ P+ EP+ ++ P+ N+ P ++ E+
Sbjct: 259 NQSVPEEDEPMQIEAAAPSSSSANENENPPLEDTIMEES 143
>TC215748 similar to GB|AAP37658.1|30725272|BT008299 At2g25430/F13B15.9
{Arabidopsis thaliana;} , partial (47%)
Length = 1413
Score = 30.8 bits (68), Expect = 1.3
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +2
Query: 208 ATTSEIPQQQQ-ESSTIHNLEKHLGGEMQPTPTKASKTVPRKTVLENQQTVPEKTVPEQT 266
A +SE P+ Q+ S + LE+ + K K+ RK ++ P + V E+
Sbjct: 107 ARSSEYPEVQKITSKLLETLEEFVRDR-----AKRPKSPERK-----EEAPPVEKVEEEP 256
Query: 267 VPEQDASEQVAPDLQTTSDQTTEPEQQPEPPIID 300
P+ + + + P T EPE +P+P + +
Sbjct: 257 APDMNEIKALPPPENYTPPPPPEPEPKPQPQVTE 358
>TC230287
Length = 839
Score = 30.8 bits (68), Expect = 1.3
Identities = 23/75 (30%), Positives = 30/75 (39%), Gaps = 6/75 (8%)
Frame = -3
Query: 180 PEPVSVQQP--EPNQEPNQTPQ-RASEVVSEATTSEIPQQQQESSTIHNL---EKHLGGE 233
P P S P P P+Q+P RAS SE+T P+ Q L
Sbjct: 303 PPPTSQSSPTSSPPTRPSQSPHTRASTAASESTRRLEPRPQATHRXTEQLWYRSPRGARS 124
Query: 234 MQPTPTKASKTVPRK 248
P P + +T+PRK
Sbjct: 123 WNPRPRRQQRTLPRK 79
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.306 0.124 0.336
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,438,186
Number of Sequences: 63676
Number of extensions: 225565
Number of successful extensions: 1554
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1526
length of query: 461
length of database: 12,639,632
effective HSP length: 101
effective length of query: 360
effective length of database: 6,208,356
effective search space: 2235008160
effective search space used: 2235008160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 61 (28.1 bits)
Medicago: description of AC146549.3