BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146527.6 - phase: 0 /pseudo
(1019 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 474 e-133
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 467 e-131
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 155 1e-37
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti... 152 7e-37
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 150 3e-36
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 150 4e-36
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 147 2e-35
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 139 8e-33
BI427153 137 2e-32
CO983154 136 4e-32
CO982036 127 2e-29
TC232995 127 2e-29
TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, ... 126 4e-29
TC213445 85 2e-28
TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotr... 118 9e-28
BM307983 121 1e-27
BI787454 weakly similar to GP|21434|emb|CA ORF4 {Solanum tuberos... 119 5e-27
BE211208 119 9e-27
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 101 2e-26
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%) 117 3e-26
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 474 bits (1219), Expect = e-133
Identities = 272/747 (36%), Positives = 418/747 (55%), Gaps = 14/747 (1%)
Frame = +1
Query: 279 EYMSHSFQEFLQSNGIISQRSCPSTP*QNGVAERKNRHLLDVVRTLLLESHVPSRFWCEA 338
E+ + F EF S GI + S TP QNG+ ERKNR L + R +L +P W EA
Sbjct: 2473 EFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEA 2652
Query: 339 LSTAVHLINRMPSPSIGNESPFTRLY----GHPPNYSTLRVFGCVCYVHLPPQERTKFTA 394
++TA ++ NR+ ++ +P T LY G P+ +FG CY+ ++R K
Sbjct: 2653 MNTACYIHNRV---TLRRGTP-TTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDP 2820
Query: 395 QSVECAFLGYSPHQKGFLCYDPNLRRIRVSRNVIF--------QENKYFFASHHDLVSSP 446
+S FLGYS + + + ++ R + S NV+ ++ + + D V+
Sbjct: 2821 KSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPARKKDVEEDVRTSGDNVADA 3000
Query: 447 ISILPLFYDSHSRQQPSKPLLTYKRRSTATHGPPQDNSLVAGPVEEPAPLRRSSRESKPP 506
+S S S KR ST L+ G P R + S+
Sbjct: 3001 AKSGENAENSDSATDESNINQPDKRSSTRIQ-KMHPKELIIGD-----PNRGVTTRSREV 3162
Query: 507 ERYIN-CMTATLSSIPIPSSYKQAMENDCWQKAIESELLALEENQTWDIVPCPSSVKPLG 565
E N C + + P + K+A+ ++ W A++ EL + N+ W++VP P +G
Sbjct: 3163 EIVSNSCFVSKIE----PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIG 3330
Query: 566 SKFVFSIKLRSDGSIDRYKAHLVVLGNKQEYGLDYDETFAPVAKMTTVRTILAIAASQAW 625
+K++F K +G I R KA LV G Q G+D+DETFAPVA++ ++R +L +A +
Sbjct: 3331 TKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKF 3510
Query: 626 PLHQMDVKNAFLHGDLQEEVYIKLPNGMPTPS-PNTVCKLKRSLYGLKQAPRVWFEKFRS 684
L+QMDVK+AFL+G L EEVY++ P G P+ P+ V +LK++LYGLKQAPR W+E+
Sbjct: 3511 KLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTE 3690
Query: 685 TLLGFEFSQSRYDPSLFLQRTPKGMVVLLVYVDDIVVTGSDQDAISRIKNLLHSTFHMKE 744
L + + D +LF+++ + +++ +YVDDIV G + + + S F M
Sbjct: 3691 FLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSL 3870
Query: 745 LGRLTYFLGLEVHYHHEGVFLNQQKYIQDLVQLAGLTNATLVDTPMEVNVKYRRDEGDHL 804
+G LTYFLGL+V + +FL+Q +Y +++V+ G+ NA+ TP ++K +DE
Sbjct: 3871 VGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTS 4050
Query: 805 DDPTQYRKLVGSLIYVTITRPDISFAVHTVSKFMQAPRHFHLSAVQQIIRYLLGTLKRGL 864
D + YR ++GSL+Y+T +RPDI++AV +++ P+ HL+ V++I++Y+ GT G+
Sbjct: 4051 VDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGI 4230
Query: 865 FFPVGSSIKLQAYSDADWAGCPDTRKSTTGWCMFLGNAPISWKCKKQDSVSKSSTEAEYR 924
+ S+ L Y DADWAG D RKST+G C +LGN ISW KKQ+ VS S+ EAEY
Sbjct: 4231 MYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYI 4410
Query: 925 AMSAACSEIIWLRGLLTELGFSQDQPTPLHADNTSAIQIAANPVYHERTKHIEVDCHSIR 984
A ++CS+++W++ +L E QD T L+ DN SAI I+ NPV H RTKHI++ H IR
Sbjct: 4411 AAGSSCSQLVWMKQMLKEYNVEQDVMT-LYCDNMSAINISKNPVQHSRTKHIDIRHHYIR 4587
Query: 985 EAYDRRIINLPHVSTSVQTADIFTKSL 1011
+ D ++I L HV T Q ADIFTK+L
Sbjct: 4588 DLVDDKVITLKHVDTEEQIADIFTKAL 4668
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 467 bits (1202), Expect = e-131
Identities = 266/748 (35%), Positives = 414/748 (54%), Gaps = 15/748 (2%)
Frame = +1
Query: 279 EYMSHSFQEFLQSNGIISQRSCPSTP*QNGVAERKNRHLLDVVRTLLLESHVPSRFWCEA 338
E+ + F EF S GI + S TP QNG+ ERKNR L + R +L +P W EA
Sbjct: 2476 EFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEA 2655
Query: 339 LSTAVHLINRMPSPSIGNESPFTRLY----GHPPNYSTLRVFGCVCYVHLPPQERTKFTA 394
++TA ++ NR+ ++ +P T LY G P +FG CY+ ++R K
Sbjct: 2656 MNTACYIHNRV---TLRRGTP-TTLYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDP 2823
Query: 395 QSVECAFLGYSPHQKGFLCYDPNLRRIRVSRNVIFQE---------NKYFFASHHDLVSS 445
+S FLGYS + + + ++ R + S NV+ + + S ++ +
Sbjct: 2824 KSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTPARKKDVEEDVRTSGDNVADT 3003
Query: 446 PISILPLFYDSHSRQQPSKPLLTYKRRSTATHGPPQDNSLVAGPVEEPAPLRRSSRESKP 505
S + +P+ + +R + L+ G P R + S+
Sbjct: 3004 AKSAENAENSDSATDEPN--INQPDKRPSIRIQKMHPKELIIGD-----PNRGVTTRSRE 3162
Query: 506 PERYIN-CMTATLSSIPIPSSYKQAMENDCWQKAIESELLALEENQTWDIVPCPSSVKPL 564
E N C + + P + K+A+ ++ W A++ EL + N+ W++VP P +
Sbjct: 3163 IEIVSNSCFVSKIE----PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVI 3330
Query: 565 GSKFVFSIKLRSDGSIDRYKAHLVVLGNKQEYGLDYDETFAPVAKMTTVRTILAIAASQA 624
G+K++F K +G I R KA LV G Q G+D+DETFAPVA++ ++R +L +A
Sbjct: 3331 GTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILK 3510
Query: 625 WPLHQMDVKNAFLHGDLQEEVYIKLPNGMPTPS-PNTVCKLKRSLYGLKQAPRVWFEKFR 683
+ L+QMDVK+AFL+G L EE Y++ P G P+ P+ V +LK++LYGLKQAPR W+E+
Sbjct: 3511 FKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLT 3690
Query: 684 STLLGFEFSQSRYDPSLFLQRTPKGMVVLLVYVDDIVVTGSDQDAISRIKNLLHSTFHMK 743
L + + D +LF+++ + +++ +YVDDIV G + + + S F M
Sbjct: 3691 EFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMS 3870
Query: 744 ELGRLTYFLGLEVHYHHEGVFLNQQKYIQDLVQLAGLTNATLVDTPMEVNVKYRRDEGDH 803
+G LTYFLGL+V + +FL+Q KY +++V+ G+ NA+ TP ++K +DE
Sbjct: 3871 LVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGT 4050
Query: 804 LDDPTQYRKLVGSLIYVTITRPDISFAVHTVSKFMQAPRHFHLSAVQQIIRYLLGTLKRG 863
D + YR ++GSL+Y+T +RPDI++AV +++ P+ HL+ V++I++Y+ GT G
Sbjct: 4051 SVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYG 4230
Query: 864 LFFPVGSSIKLQAYSDADWAGCPDTRKSTTGWCMFLGNAPISWKCKKQDSVSKSSTEAEY 923
+ + S L Y DADWAG D RKST+G C +LG ISW KKQ+ VS S+ EAEY
Sbjct: 4231 IMYCHCSDSMLVGYCDADWAGSADDRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEY 4410
Query: 924 RAMSAACSEIIWLRGLLTELGFSQDQPTPLHADNTSAIQIAANPVYHERTKHIEVDCHSI 983
A ++CS+++W++ +L E QD T L+ DN SAI I+ NPV H RTKHI++ H I
Sbjct: 4411 IAAGSSCSQLVWMKQMLKEYNVEQDVMT-LYCDNMSAINISKNPVQHSRTKHIDIRHHYI 4587
Query: 984 REAYDRRIINLPHVSTSVQTADIFTKSL 1011
R+ D ++I L HV T Q ADIFTK+L
Sbjct: 4588 RDLVDDKVITLEHVDTEEQIADIFTKAL 4671
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 155 bits (391), Expect = 1e-37
Identities = 79/213 (37%), Positives = 124/213 (58%), Gaps = 3/213 (1%)
Frame = +1
Query: 806 DPTQYRKLVGSLIYVTITRPDISFAVHTVSKFMQAPRHFHLSAVQQIIRYLLGTLKRGLF 865
D T++R+L+GSL Y+ +RP+I FAV +S+FM+ PR H+ A ++++R + GT+ G+
Sbjct: 10 DVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVL 189
Query: 866 FPVGSSI---KLQAYSDADWAGCPDTRKSTTGWCMFLGNAPISWKCKKQDSVSKSSTEAE 922
FP + L Y+D+DW P+ KST G+ +AP++ KKQD ++ S+ EAE
Sbjct: 190 FPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAE 369
Query: 923 YRAMSAACSEIIWLRGLLTELGFSQDQPTPLHADNTSAIQIAANPVYHERTKHIEVDCHS 982
Y A S + +W+ LL EL + +P L DN SAI +A +P H R+KHIE+ H
Sbjct: 370 YVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHY 549
Query: 983 IREAYDRRIINLPHVSTSVQTADIFTKSLTRQR 1015
IR+ + + + + Q AD+ TK + R
Sbjct: 550 IRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSR 648
>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
Length = 558
Score = 152 bits (384), Expect = 7e-37
Identities = 83/179 (46%), Positives = 113/179 (62%), Gaps = 2/179 (1%)
Frame = +1
Query: 578 GSIDRYKAHLVVLGNKQEYGLDYDETFAPVAKMTTVRTILAIAASQAWPLHQMDVKNAFL 637
G+ID++KA LV Q YG DY TF+PVAKM V + ++A WPL +D KNAFL
Sbjct: 28 GTIDQFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAFL 207
Query: 638 HGDLQEEVYIKLPNGMPT--PSPNTVCKLKRSLYGLKQAPRVWFEKFRSTLLGFEFSQSR 695
HG L+EEVY++ P G S N VC+L RS YGLKQ+PR W + + ++ ++
Sbjct: 208 HGYLEEEVYMEQPLGFVAQGESSNMVCQLCRSFYGLKQSPRAWPFLYCGAAIWYDSHEA- 384
Query: 696 YDPSLFLQRTPKGMVVLLVYVDDIVVTGSDQDAISRIKNLLHSTFHMKELGRLTYFLGL 754
D S+F +P+G + L+VYVDDI +TGSDQ I+ +K L F K+LG+L YFLG+
Sbjct: 385 -DHSVFYCHSPQGCIYLIVYVDDIGITGSDQHGIT*LK*XLCCQFQTKDLGKLRYFLGI 558
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 150 bits (379), Expect = 3e-36
Identities = 71/129 (55%), Positives = 92/129 (71%), Gaps = 1/129 (0%)
Frame = -2
Query: 555 VPCPSSVKPLGSKFVFSIKLRSDGSIDRYKAHLVVLGNKQEYGLDYDETFAPVAKMTTVR 614
VP P P+G ++V+++K+ G +DR KA LV G Q YG+DY +TF+PVAK+TTVR
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 615 TILAIAASQAWPLHQMDVKNAFLHGDLQEEVYIKLPNGMPTPSP-NTVCKLKRSLYGLKQ 673
LA+AA WPLHQ+D+KNAFLHGDL+E++Y++ P G VCKL RSLYGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 674 APRVWFEKF 682
+PR WF KF
Sbjct: 46 SPRAWFGKF 20
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 150 bits (378), Expect = 4e-36
Identities = 69/139 (49%), Positives = 96/139 (68%)
Frame = +2
Query: 873 KLQAYSDADWAGCPDTRKSTTGWCMFLGNAPISWKCKKQDSVSKSSTEAEYRAMSAACSE 932
+L Y DADWAGCP R+ST+G+C+F+G +SWK KKQ V++SS EAEYR+M+ E
Sbjct: 14 QLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCE 193
Query: 933 IIWLRGLLTELGFSQDQPTPLHADNTSAIQIAANPVYHERTKHIEVDCHSIREAYDRRII 992
++W++ L EL F ++ L+ DN +A+ IA+NPV+HERTKHIE+DCH IRE + I
Sbjct: 194 LMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEI 373
Query: 993 NLPHVSTSVQTADIFTKSL 1011
+ ++ Q DI TKSL
Sbjct: 374 VTEFIGSNDQPVDILTKSL 430
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 147 bits (372), Expect = 2e-35
Identities = 64/135 (47%), Positives = 101/135 (74%)
Frame = +3
Query: 517 LSSIPIPSSYKQAMENDCWQKAIESELLALEENQTWDIVPCPSSVKPLGSKFVFSIKLRS 576
LSS+ +PS+ ++A+++ W++A+ E+ ALE N TW++VP P +G ++V+++K+
Sbjct: 3 LSSLTVPSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGP 182
Query: 577 DGSIDRYKAHLVVLGNKQEYGLDYDETFAPVAKMTTVRTILAIAASQAWPLHQMDVKNAF 636
+G +DR KA LV G Q YG++Y +TF+PV +TTVR LA+AA + WPLHQ+D+KNAF
Sbjct: 183 NGKVDRLKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAF 362
Query: 637 LHGDLQEEVYIKLPN 651
LHGDL+E++Y++ PN
Sbjct: 363 LHGDLEEDIYMEQPN 407
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 139 bits (349), Expect = 8e-33
Identities = 71/151 (47%), Positives = 99/151 (65%), Gaps = 1/151 (0%)
Frame = -3
Query: 538 AIESELLALEENQTWDIVPCPSSVKPLGSKFVFSIKLRSDGSIDRYKAHLVVLGNKQEYG 597
A++ EL E N W +V P + +G+K+VF KL G I R KA LV G QE G
Sbjct: 458 AMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEG 279
Query: 598 LDYDETFAPVAKMTTVRTILAIAASQAWPLHQMDVKNAFLHGDLQEEVYIKLPNGMPTP- 656
+DY+ET+APVA++ +R +LA + + L+QMDVK+AFL+G +QEEVY++ P G P
Sbjct: 278 IDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIPD 99
Query: 657 SPNTVCKLKRSLYGLKQAPRVWFEKFRSTLL 687
P V KL+++LYGLKQAPR W+E+ + LL
Sbjct: 98 KPTHVYKLQKALYGLKQAPRAWYERISNFLL 6
>BI427153
Length = 422
Score = 137 bits (345), Expect = 2e-32
Identities = 70/140 (50%), Positives = 94/140 (67%), Gaps = 4/140 (2%)
Frame = +1
Query: 297 QRSCPSTP*QNGVAERKNRHLLDVVRTLLLESHVPSRFWCEALSTAVHLINRMPSPSIGN 356
Q +CP TP QNG+AERKN HLL+ R+L+L S+VP+ W +A+ TA LINRMPS S+ N
Sbjct: 4 QSTCPHTPQQNGIAERKNHHLLETARSLMLNSNVPTHHWGDAVLTACFLINRMPSSSLEN 183
Query: 357 ESPFTRLYGHPPN----YSTLRVFGCVCYVHLPPQERTKFTAQSVECAFLGYSPHQKGFL 412
+ P + ++ PN Y + +VFGC C+VH K +A+SV+C FLGYS QKG+
Sbjct: 184 QIPHSIVF---PNDLLFYVSPKVFGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQKGYT 354
Query: 413 CYDPNLRRIRVSRNVIFQEN 432
CY PN+RR +S NV F E+
Sbjct: 355 CYFPNMRRYYMSANVTFFED 414
>CO983154
Length = 568
Score = 136 bits (343), Expect = 4e-32
Identities = 70/151 (46%), Positives = 98/151 (64%), Gaps = 1/151 (0%)
Frame = +3
Query: 303 TP*QNGVAERKNRHLLDVVRTLLLESHVPSRFWCEALSTAVHLINRMPSPSIGNESPFTR 362
TP QNG+AERKNRHLL+ R+L+L +VP W +A+ T+ LINRMPS S+ N+ P +
Sbjct: 6 TPQQNGIAERKNRHLLETARSLMLNLNVPIHHWGDAVLTSCFLINRMPSSSLENQIPHSL 185
Query: 363 LYGHPPNYS-TLRVFGCVCYVHLPPQERTKFTAQSVECAFLGYSPHQKGFLCYDPNLRRI 421
++ H P + + +VFGC C+VH K +A+SV+C FLGYS QKG+ CY P +RR
Sbjct: 186 VFPHDPLFHVSPKVFGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQKGYKCYSPTMRRY 365
Query: 422 RVSRNVIFQENKYFFASHHDLVSSPISILPL 452
+S +V F E+ FF+ D SS +LP+
Sbjct: 366 YMSADVTFFEDTPFFSPSVDHSSSLQEVLPI 458
>CO982036
Length = 674
Score = 127 bits (319), Expect = 2e-29
Identities = 80/205 (39%), Positives = 119/205 (58%), Gaps = 3/205 (1%)
Frame = -2
Query: 710 VVLLVYVDDIVVTGSDQDAISRIKNLLHSTFHMKELGRLTYFLGLEVHYHHEGVFLNQQK 769
V LLVYVD I++TGS I + + L+S+F +K LG+L YF+ +EV + +F + +
Sbjct: 652 VYLLVYVD-IIITGSSCTLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPDLLF-SLRT 479
Query: 770 YIQDLVQLAGLTNATLVDTPMEVNVKYRRDEGDHLDDPTQYRKLVGSLIYVTITRPDISF 829
I ++ A + +PM K + + D PT YR +VG+L Y T+ RP+ISF
Sbjct: 478 SIFEIFCRKPR*QAQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEISF 299
Query: 830 AVHTVSKFMQAPRHFHLSAVQQIIRYLLGTLKRGL-FFPVGSS--IKLQAYSDADWAGCP 886
AV+ V +FM P H + V++I+RYL G+L GL P SS + ++ + DADWA
Sbjct: 298 AVNKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADWASAV 119
Query: 887 DTRKSTTGWCMFLGNAPISWKCKKQ 911
D ++ST+G +FLG ISW KQ
Sbjct: 118 DDKRSTSGAAVFLGPNLISWWXXKQ 44
>TC232995
Length = 1009
Score = 127 bits (319), Expect = 2e-29
Identities = 64/164 (39%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Frame = +2
Query: 658 PNTVCKLKRSLYGLKQAPRVWFEKFRSTLLGFEFSQSRYDPSLFLQRTPKGMVVLLVYVD 717
PN V KL+++LYGLKQAPR W+E+ + LL EFS+ + D +LF++R ++++ +YVD
Sbjct: 38 PNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRKHNDILLVQIYVD 217
Query: 718 DIVVTGSDQDAISRIKNL-LHSTFHMKELGRLTYFLGLEVHYHHEGVFLNQQKYIQDLVQ 776
DI+ GS D++ + +L + S F M +G L YFLGL++ G+F+NQ KY ++L++
Sbjct: 218 DIIF-GSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIFINQSKYCKELIK 394
Query: 777 LAGLTNATLVDTPMEVNVKYRRDEGDHLDDPTQYRKLVGSLIYV 820
G+ +A + TPM N +DE D QYR +G ++ +
Sbjct: 395 RFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIGEVVEI 526
>TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, partial (16%)
Length = 662
Score = 126 bits (317), Expect = 4e-29
Identities = 73/171 (42%), Positives = 112/171 (64%), Gaps = 4/171 (2%)
Frame = +3
Query: 846 LSAVQQIIRYLLGTLKRGLFFPVGSSIKLQAYSDADWAGCPDTRKSTTGWCMFLGNAPIS 905
L A ++++YL G ++GL F S I++ +SDADWA C D+ KS T +C FLG++ IS
Sbjct: 12 LCAATRVLKYLKGCPRKGLSFSRESPIQILGFSDADWATCIDSSKSITWYCFFLGSSLIS 191
Query: 906 WKCKKQDSVSK--SSTEAEYRAMSAACSEIIWLRGLLTELGFSQDQPTPLHADNTSAIQ- 962
WK KKQ++VS+ SS+EA+YRA+++ E+ WL LL +L T ++ DN SA+Q
Sbjct: 192 WKAKKQNTVSRSSSSSEAKYRALTSTTCELQWLTYLLKDL-----HVTLIYCDNQSALQ* 356
Query: 963 IAANPVYHERTKHIEVDCHSIREAYDRRIIN-LPHVSTSVQTADIFTKSLT 1012
+ +YH + +E+DCH +RE + +++ L VS+S Q ADIFTK+L+
Sbjct: 357 LPIKVIYHGQ---LEIDCHIVREKTQQGLMHCLLPVSSSNQLADIFTKALS 500
>TC213445
Length = 705
Score = 85.1 bits (209), Expect(2) = 2e-28
Identities = 42/100 (42%), Positives = 62/100 (62%)
Frame = +1
Query: 885 CPDTRKSTTGWCMFLGNAPISWKCKKQDSVSKSSTEAEYRAMSAACSEIIWLRGLLTELG 944
C R+ST+ C F+G+A +SW KKQ+SV S+ EAEY + + ++I W+R L + G
Sbjct: 397 CKTDRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYG 576
Query: 945 FSQDQPTPLHADNTSAIQIAANPVYHERTKHIEVDCHSIR 984
D P+ DNTSAI ++ N + + RTKHIE+ H +R
Sbjct: 577 LKLDH-IPIRCDNTSAINLSKNHILYSRTKHIEIRHHFLR 693
Score = 60.5 bits (145), Expect(2) = 2e-28
Identities = 27/68 (39%), Positives = 44/68 (64%)
Frame = +2
Query: 813 LVGSLIYVTITRPDISFAVHTVSKFMQAPRHFHLSAVQQIIRYLLGTLKRGLFFPVGSSI 872
++ S +Y++ +RP I F+V ++ P+ HLS +++I+RYLLG + GL++P SS
Sbjct: 197 MIESFLYLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPKNSSY 376
Query: 873 KLQAYSDA 880
L YSDA
Sbjct: 377 NLVGYSDA 400
>TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotransposon
Hopscotch polyprotein, partial (7%)
Length = 1446
Score = 118 bits (296), Expect(2) = 9e-28
Identities = 55/107 (51%), Positives = 74/107 (68%)
Frame = +2
Query: 879 DADWAGCPDTRKSTTGWCMFLGNAPISWKCKKQDSVSKSSTEAEYRAMSAACSEIIWLRG 938
DA+WA P R ST G+C+ +G + WK K + V++SS EAEY+AM+ A E+IW++
Sbjct: 8 DANWAVSPIDRGSTLGYCVSIGENLVLWKSNK*NVVARSSAEAEYKAMTVATCELIWIKQ 187
Query: 939 LLTELGFSQDQPTPLHADNTSAIQIAANPVYHERTKHIEVDCHSIRE 985
LL EL F Q L DN +A+ IA+NPV+HERTKHIE+DCH +RE
Sbjct: 188 LLQELKFGSTQQMKLCCDNQAALHIASNPVFHERTKHIEIDCHFVRE 328
Score = 24.6 bits (52), Expect(2) = 9e-28
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +3
Query: 984 REAYDRRIINLPHVSTSVQTADIFTKSLTRQR 1015
R+++ + +I + VS++ Q A+IFTKSL R
Sbjct: 327 RKSFSKEVI-IEFVSSNDQLANIFTKSLRGPR 419
>BM307983
Length = 406
Score = 121 bits (304), Expect = 1e-27
Identities = 60/134 (44%), Positives = 88/134 (64%), Gaps = 2/134 (1%)
Frame = +2
Query: 564 LGSKFVFSIKLRSDGSIDRYKAHLVVLGNKQEYGLDYDETFAPVAKMTTVRTILAIAASQ 623
+G ++++++K +D ++DRYKA LV G Q YG+DY+ETFA K + +Q
Sbjct: 2 VGCRWIYTVKY*ADDTLDRYKARLVAKGYIQTYGIDYEETFAQWQK*IQSGSSSP*QQAQ 181
Query: 624 -AWPLHQMDVKNAFLHGDLQEEVYIKLPNGM-PTPSPNTVCKLKRSLYGLKQAPRVWFEK 681
W +HQ DVKNAFLHG L+EEVY+++P G + N VC+LK++LYGLKQ+PR WF +
Sbjct: 182 FGWEMHQFDVKNAFLHGSLEEEVYMEIPPGYGASNGGNKVCRLKKALYGLKQSPRAWFGR 361
Query: 682 FRSTLLGFEFSQSR 695
F +L + QS+
Sbjct: 362 FTQAMLSLGYKQSQ 403
>BI787454 weakly similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial
(21%)
Length = 421
Score = 119 bits (299), Expect = 5e-27
Identities = 64/138 (46%), Positives = 89/138 (64%), Gaps = 1/138 (0%)
Frame = +2
Query: 694 SRYDPSLFLQRTPKGMVV-LLVYVDDIVVTGSDQDAISRIKNLLHSTFHMKELGRLTYFL 752
S D S+F T G V L+VYVDDI++T D I ++K L + F K+L L YFL
Sbjct: 8 SEADHSVFYCHTSPGKCVYLMVYVDDIMITKKDATKIVQLKEHLFNHFQTKDLRYLKYFL 187
Query: 753 GLEVHYHHEGVFLNQQKYIQDLVQLAGLTNATLVDTPMEVNVKYRRDEGDHLDDPTQYRK 812
G+EV +GV ++Q+KY D+++ G+ N LVD+PM+ N+K + + DP +YR+
Sbjct: 188 GIEVAQSGDGVVISQRKYALDILEETGMQNCRLVDSPMDPNLKLMAYQSEVYPDPERYRR 367
Query: 813 LVGSLIYVTITRPDISFA 830
LVG LIY+TITRPDISFA
Sbjct: 368 LVGKLIYLTITRPDISFA 421
>BE211208
Length = 413
Score = 119 bits (297), Expect = 9e-27
Identities = 61/132 (46%), Positives = 86/132 (64%), Gaps = 1/132 (0%)
Frame = +2
Query: 707 KGMVVLLVYVDDIVVTGSDQDAISRIKNLLHSTFHMKELGRLTYFLGLEVHYHHEG-VFL 765
+ +V LLVYVDDI++TG I + + L+S F +K+LG+L YFLG+EVH+ G V L
Sbjct: 17 RNLVYLLVYVDDIIITGRSNYLIQSLVHHLNSNFSLKQLGQLDYFLGIEVHHTPTGSVLL 196
Query: 766 NQQKYIQDLVQLAGLTNATLVDTPMEVNVKYRRDEGDHLDDPTQYRKLVGSLIYVTITRP 825
Q KYI DL+ + A + +PM N++ ++ D L DPT YR +VG+L Y TITRP
Sbjct: 197 TQSKYICDLLHKTDMAEAKPISSPMVTNLRLSKNGDDLLSDPTMYRSVVGALQYPTITRP 376
Query: 826 DISFAVHTVSKF 837
+ISFA + V +F
Sbjct: 377 EISFAANKVCQF 412
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 101 bits (251), Expect(2) = 2e-26
Identities = 57/184 (30%), Positives = 97/184 (51%)
Frame = +3
Query: 710 VVLLVYVDDIVVTGSDQDAISRIKNLLHSTFHMKELGRLTYFLGLEVHYHHEGVFLNQQK 769
+++ +YVDDI+ + + L+ F G L + LGL++ G+F++Q+K
Sbjct: 489 LIIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIHQEK 668
Query: 770 YIQDLVQLAGLTNATLVDTPMEVNVKYRRDEGDHLDDPTQYRKLVGSLIYVTITRPDISF 829
Y + ++ + A + TPM + +DE + +Y ++ SL Y+T +RPDI F
Sbjct: 669 YTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDIVF 848
Query: 830 AVHTVSKFMQAPRHFHLSAVQQIIRYLLGTLKRGLFFPVGSSIKLQAYSDADWAGCPDTR 889
V ++F P+ H++AV++I+RYL+GT L+F S L Y D +AG R
Sbjct: 849 VVCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGYCDVYFAGDKVER 1028
Query: 890 KSTT 893
KST+
Sbjct: 1029KSTS 1040
Score = 37.4 bits (85), Expect(2) = 2e-26
Identities = 19/49 (38%), Positives = 30/49 (60%)
Frame = +2
Query: 668 LYGLKQAPRVWFEKFRSTLLGFEFSQSRYDPSLFLQRTPKGMVVLLVYV 716
+YGLKQA R W+E+ S L+ F++ DP+LF ++ KG + Y+
Sbjct: 362 VYGLKQALRAWYERLSSFLVSNGFTRGITDPALF-RKAQKGNLSYYSYL 505
>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
Length = 493
Score = 117 bits (293), Expect = 3e-26
Identities = 57/125 (45%), Positives = 80/125 (63%)
Frame = +3
Query: 887 DTRKSTTGWCMFLGNAPISWKCKKQDSVSKSSTEAEYRAMSAACSEIIWLRGLLTELGFS 946
D RKSTTG+ F+G+ +W KKQ V+ S+ EAEY A ++ IWLR LL EL
Sbjct: 9 DDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKMP 188
Query: 947 QDQPTPLHADNTSAIQIAANPVYHERTKHIEVDCHSIREAYDRRIINLPHVSTSVQTADI 1006
Q++P + DN SA+ +A NPV+HE++KHI+ H IRE +++ + L +V + Q ADI
Sbjct: 189 QEEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKLKYVMSQDQAADI 368
Query: 1007 FTKSL 1011
FTK L
Sbjct: 369 FTKPL 383
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.339 0.147 0.496
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,791,630
Number of Sequences: 63676
Number of extensions: 932201
Number of successful extensions: 6827
Number of sequences better than 10.0: 136
Number of HSP's better than 10.0 without gapping: 6636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6779
length of query: 1019
length of database: 12,639,632
effective HSP length: 107
effective length of query: 912
effective length of database: 5,826,300
effective search space: 5313585600
effective search space used: 5313585600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 64 (29.3 bits)
Medicago: description of AC146527.6