BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146343.4 - phase: 0
(141 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC210669 similar to UP|Q9FFR9 (Q9FFR9) Na+/H+ antiporter-like pr... 49 1e-06
TC220173 33 0.058
BM140037 32 0.099
TC216417 similar to UP|Q7XJ64 (Q7XJ64) At1g15860, partial (87%) 28 1.1
TC212376 homologue to UP|Q9LV37 (Q9LV37) MAP kinase, partial (24%) 28 1.9
TC206512 similar to UP|Q9FV81 (Q9FV81) Glu-tRNA(Gln) amidotransf... 28 1.9
TC203865 similar to UP|Q9FZC2 (Q9FZC2) T1K7.26 protein, partial ... 26 7.1
TC205171 similar to PIR|E86431|E86431 T5I8.7 protein - Arabidops... 26 7.1
TC203775 similar to UP|O04894 (O04894) Transaldolase , partial ... 26 7.1
TC210703 similar to UP|Q96397 (Q96397) LRG5 protein, partial (4%) 25 9.3
TC217439 similar to UP|Q94F63 (Q94F63) Somatic embryogenesis rec... 25 9.3
TC210696 25 9.3
TC217441 homologue to GB|AAK68074.1|14573459|AF384970 somatic em... 25 9.3
TC210938 25 9.3
TC205622 similar to UP|Q84KS0 (Q84KS0) Auxin-repressed protein-l... 25 9.3
>TC210669 similar to UP|Q9FFR9 (Q9FFR9) Na+/H+ antiporter-like protein,
partial (16%)
Length = 952
Score = 48.5 bits (114), Expect = 1e-06
Identities = 30/93 (32%), Positives = 51/93 (54%)
Frame = +3
Query: 42 DDELLKGVKGVYGSVDNVTYEKVEVENTSDTTEFISDIAIQHDFIIVGRRNGIKSPQTQA 101
D+E L K + D++ YE+ V++ ++T I ++ + F++ R + + +
Sbjct: 336 DEEFLDEFKAKIANDDSIIYEEKVVKDGAETVAIICELNSCNLFLVGSR----PASEVAS 503
Query: 102 LASWTEYPELGVLGDLLASPDTNTKASILVVQQ 134
+E PELG +G LLAS D T AS+LV+QQ
Sbjct: 504 AMKRSECPELGPVGGLLASQDYPTTASVLVMQQ 602
>TC220173
Length = 567
Score = 32.7 bits (73), Expect = 0.058
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +1
Query: 83 HDFIIVGRRNGIKSPQTQALASWTEYPELGVLGDLLASPDTNTKASILVVQQ 134
+D IIVG+ G S A ++ ELG +GD+LAS + +S+LV+QQ
Sbjct: 253 YDLIIVGK--GQFSLSLVADLVDRQHEELGPIGDILASSTHDVVSSVLVIQQ 402
>BM140037
Length = 272
Score = 32.0 bits (71), Expect = 0.099
Identities = 20/71 (28%), Positives = 37/71 (51%), Gaps = 2/71 (2%)
Frame = -3
Query: 67 ENTSDTTEFISDI--AIQHDFIIVGRRNGIKSPQTQALASWTEYPELGVLGDLLASPDTN 124
+N ++ TE + + A HD +IVG++ +++ + ELG +GDL S
Sbjct: 264 KNATNITEEVLSVGKAKDHDLVIVGKQQ-LETTMLTNIDFRHGNEELGPIGDLFVSSGNG 88
Query: 125 TKASILVVQQQ 135
+S+LV+Q +
Sbjct: 87 ITSSLLVIQDR 55
>TC216417 similar to UP|Q7XJ64 (Q7XJ64) At1g15860, partial (87%)
Length = 826
Score = 28.5 bits (62), Expect = 1.1
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 10 KGQSKKILITWVVYHLVSTIKNDEFTSWDVMLDDELLKGVKGVY 53
K +SK IL +V YH+ + + F + D+ +E LK +KG Y
Sbjct: 165 KLRSKDILPWYVYYHVHCS*ATEIFKATDIR*VEERLKSIKGRY 296
>TC212376 homologue to UP|Q9LV37 (Q9LV37) MAP kinase, partial (24%)
Length = 731
Score = 27.7 bits (60), Expect = 1.9
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 47 KGVKGVYGS-VDNVTYEKVEVENTSDTTEFISD 78
KG GV GS +D T EKV ++ +D E +SD
Sbjct: 384 KGSYGVVGSAIDTHTGEKVAIKKINDVFEHVSD 482
>TC206512 similar to UP|Q9FV81 (Q9FV81) Glu-tRNA(Gln) amidotransferase
subunit B (At1g48520/T1N15_12), partial (74%)
Length = 1626
Score = 27.7 bits (60), Expect = 1.9
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +1
Query: 10 KGQSKKILITWVVYHLVSTIKNDEFTSWDVMLD----DELLKGVKG 51
KG K++ W++ + + +KN++ T ++ L EL+ +KG
Sbjct: 802 KGADSKLVANWIMSDIAAFMKNEKLTINEIKLTPEELSELIASIKG 939
>TC203865 similar to UP|Q9FZC2 (Q9FZC2) T1K7.26 protein, partial (15%)
Length = 1161
Score = 25.8 bits (55), Expect = 7.1
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 8 WLKGQSKKILITWVVYHLVSTIKNDEFTSWDVMLDDELLKGVKGVYGSVD 57
W K IL +++H+V NDE W E+++G +GS++
Sbjct: 956 WTKTMQLSIL--HMIHHMVGLNHNDELVPW--RTTKEVIQGRSATWGSMN 819
>TC205171 similar to PIR|E86431|E86431 T5I8.7 protein - Arabidopsis thaliana
{Arabidopsis thaliana;} , partial (97%)
Length = 1690
Score = 25.8 bits (55), Expect = 7.1
Identities = 11/29 (37%), Positives = 17/29 (57%)
Frame = +3
Query: 9 LKGQSKKILITWVVYHLVSTIKNDEFTSW 37
L G KK+++T V+HL S + +SW
Sbjct: 1425 LHGNGKKLIVTVTVFHLQSEFLAIQPSSW 1511
>TC203775 similar to UP|O04894 (O04894) Transaldolase , partial (87%)
Length = 1729
Score = 25.8 bits (55), Expect = 7.1
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -1
Query: 4 KHCVWLKGQSKKILITWVVYH 24
+HC++L+ Q L++W+ YH
Sbjct: 1270 EHCIFLQLQMHLSLLSWIRYH 1208
>TC210703 similar to UP|Q96397 (Q96397) LRG5 protein, partial (4%)
Length = 491
Score = 25.4 bits (54), Expect = 9.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 97 PQTQALASWTEYPELGVLGDLLASPDTNTKA 127
P T SW +P L + G LAS +++ A
Sbjct: 361 PTTATTPSWRRFPSLSINGKSLASSPSSSVA 269
>TC217439 similar to UP|Q94F63 (Q94F63) Somatic embryogenesis receptor-like
kinase 2, partial (24%)
Length = 861
Score = 25.4 bits (54), Expect = 9.3
Identities = 10/16 (62%), Positives = 13/16 (80%)
Frame = -1
Query: 82 QHDFIIVGRRNGIKSP 97
QHD II+G+ + IKSP
Sbjct: 141 QHDIIIIGKSS*IKSP 94
>TC210696
Length = 604
Score = 25.4 bits (54), Expect = 9.3
Identities = 11/27 (40%), Positives = 18/27 (65%)
Frame = -2
Query: 6 CVWLKGQSKKILITWVVYHLVSTIKND 32
C+WL SKKI I+ + YH++ ++ D
Sbjct: 447 CIWLAESSKKISIS-LAYHVLLMLQVD 370
>TC217441 homologue to GB|AAK68074.1|14573459|AF384970 somatic embryogenesis
receptor-like kinase 3 {Arabidopsis thaliana;} , partial
(54%)
Length = 1008
Score = 25.4 bits (54), Expect = 9.3
Identities = 10/16 (62%), Positives = 13/16 (80%)
Frame = -3
Query: 82 QHDFIIVGRRNGIKSP 97
QHD II+G+ + IKSP
Sbjct: 805 QHDIIIIGKSS*IKSP 758
>TC210938
Length = 880
Score = 25.4 bits (54), Expect = 9.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 5 HCVWLKGQSKKILITWVVYHL 25
HC WLK + ++L T +HL
Sbjct: 674 HCFWLKSKFPEVLFTISSHHL 612
>TC205622 similar to UP|Q84KS0 (Q84KS0) Auxin-repressed protein-like protein,
partial (33%)
Length = 850
Score = 25.4 bits (54), Expect = 9.3
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -2
Query: 12 QSKKILITWVVYHLVSTIKN-DEFTSWDVMLDDELLKGVKGVYGSVDNVTYEKVEV 66
+SK ++IT+ Y+++S + D+F + + GVKG G VD E+ EV
Sbjct: 420 RSKALIITF--YYVLSALSTVDDFLLVNFLKSPPGASGVKGERGVVDPEGEEEAEV 259
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.316 0.133 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,893,574
Number of Sequences: 63676
Number of extensions: 61674
Number of successful extensions: 327
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of query: 141
length of database: 12,639,632
effective HSP length: 88
effective length of query: 53
effective length of database: 7,036,144
effective search space: 372915632
effective search space used: 372915632
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)
Medicago: description of AC146343.4