BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146333.2 - phase: 0
(615 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC234828 214 9e-56
BQ273711 88 1e-17
CF922015 80 3e-15
NP595172 polyprotein [Glycine max] 59 6e-09
TC233976 58 1e-08
CD487724 58 1e-08
TC206178 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, part... 57 3e-08
TC228935 similar to UP|Q9FHC2 (Q9FHC2) Arabidopsis thaliana geno... 52 6e-07
TC227588 similar to PIR|T00837|T00837 glycine-rich protein T13L1... 49 9e-06
TC206180 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, part... 48 1e-05
CO980191 47 3e-05
TC227589 46 4e-05
CF922531 46 6e-05
TC223754 similar to UP|Q86EQ4 (Q86EQ4) Clone ZZD1536 mRNA sequen... 42 0.001
TC225188 similar to UP|Q9FYB7 (Q9FYB7) Splicing factor-like prot... 42 0.001
TC205022 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, pa... 41 0.002
CF922226 37 0.020
TC218711 similar to UP|Q90Z60 (Q90Z60) Rev-Erb beta (Fragment), ... 37 0.026
TC217412 similar to UP|Q6L724 (Q6L724) ATP-dependent RNA helicas... 36 0.044
TC217411 similar to UP|Q8L7S8 (Q8L7S8) At5g26740, partial (26%) 36 0.044
>TC234828
Length = 857
Score = 214 bits (545), Expect = 9e-56
Identities = 111/259 (42%), Positives = 164/259 (62%), Gaps = 7/259 (2%)
Frame = +3
Query: 299 NCNGEGHISSQCTQPKRAPTTGRVFALTGTQTENEDRLIRGTCYINNTPLVAIIDTGATH 358
N G++S+ R RVFA++G++ D LIRG C I + L + D+GATH
Sbjct: 66 NSTRSGNVSNNNISGGRPKVPSRVFAMSGSEAAASDDLIRGKCLIADKLLDVLYDSGATH 245
Query: 359 CFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLS 418
FI+ CV LGL +++ +MVV TP VTTS VCLKCP+ + GR F DL+CLPL+
Sbjct: 246 SFISHACVERLGLCATELPYDMVVSTPTSEPVTTSRVCLKCPIIVEGRSFMADLICLPLA 425
Query: 419 GMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQ----LERDGILMFS 474
+DVILGM+WL NH+ ++C K + F G + + ++ LK+ E + + +
Sbjct: 426 HLDVILGMDWLSTNHIFLDCKEKMLVF-------GGDVVPSEPLKEDAANEETEDVRTYM 584
Query: 475 LMATLSIENQAVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRIS 534
++ ++ +E A + +PVV +FPEVFPD++ ++PPEREVEF ID+VPG PVS+APYR+S
Sbjct: 585 VLFSMYVEEDAEVSCIPVVSEFPEVFPDDVCELPPEREVEFIIDVVPGANPVSIAPYRMS 764
Query: 535 ---ASELKKQLEDLLEKKF 550
+E+K Q++DLL K+F
Sbjct: 765 PVELAEVKAQVQDLLSKQF 821
>BQ273711
Length = 409
Score = 87.8 bits (216), Expect = 1e-17
Identities = 48/124 (38%), Positives = 67/124 (53%), Gaps = 3/124 (2%)
Frame = -2
Query: 1 MAGRN---DAALAAALQAVAQAVGQQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGA 57
MAGR + + + AV + + Q+ +V AE R L F K +PP F G YDP+GA
Sbjct: 363 MAGRGRDQNRDVLDRITAVLETLVQERDVEP---AEYRGLMAFRKNHPPKFSGDYDPEGA 193
Query: 58 QTWLKEIERIFRVMQYTEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREF 117
+ WL E E+IF M EE KV + T L EA++WW + P+ G V+ W F+ +F
Sbjct: 192 RLWLAETEKIFEAMGCLEEHKVLYATFMLQGEAENWWKFVKPSFVAPGGVIPWNAFKDKF 13
Query: 118 LRRY 121
L Y
Sbjct: 12 LENY 1
>CF922015
Length = 172
Score = 79.7 bits (195), Expect = 3e-15
Identities = 34/54 (62%), Positives = 43/54 (78%)
Frame = -3
Query: 37 LETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRFGTHQLAEEA 90
L+ F + NPPTFKG YDP+GA+ WL+EIE+IFRVM+ + QKV F TH LA+EA
Sbjct: 164 LDRFQRNNPPTFKGGYDPEGAEAWLREIEKIFRVMECQDHQKVLFATHMLADEA 3
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 58.9 bits (141), Expect = 6e-09
Identities = 124/609 (20%), Positives = 220/609 (35%), Gaps = 61/609 (10%)
Frame = +1
Query: 1 MAGRNDAA---LAAALQAVAQAVGQQPNVNAGAN--AEARMLETFMKKNPPTFKGRYDPD 55
M ND+ L A + V Q + P + GA+ + + +F ++ R+D
Sbjct: 145 MQSTNDSQFSQLNAVMSQVLQRLQNIPMSSHGASNSQKEQQRSSFQVRSVKLDFPRFDGK 324
Query: 56 GAQTWLKEIERIFRVMQYTEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRR 115
W+ + E+ F + ++ + L ++ W+ L T +W F R
Sbjct: 325 NVMDWIFKAEQFFDYYATPDADRLIIASVHLDQDVVPWYQMLQKT----EPFSSWQAFTR 492
Query: 116 EFLRRYFLEDVRGKKEIEFLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFE 175
L F +L Q + +V EY +F L +AE C F
Sbjct: 493 A-LELDFGPSAYDCPRATLFKLNQ-SATVNEYYMQFTALVNRVDGLSAE--AILDC--FV 654
Query: 176 NGLRLDIKRAIGYQQLRVFQDLVNSCRIYEE--------------------DTKAHYKVV 215
+GL+ +I R + + R V +++EE +T A K
Sbjct: 655 SGLQEEISRDVKAMEPRTLTKAVALAKLFEEKYTSPPKTKTFSNLARNFTSNTSATQKYP 834
Query: 216 NERKGKGQQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEI-------VCFNCGEKGHKSN 268
+ P P K + + KK AEI +C+ C EK ++
Sbjct: 835 PTNQKNDNPKPNLPPLLPTPSTKPFNLRNQNIKKISPAEIQLRREKNLCYFCDEKFSPAH 1014
Query: 269 ACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQPKRAPTTGRVFALTGT 328
CP ++ + D ++TD T+ +L
Sbjct: 1015KCPNRQVMLLQLEE-----TDEDQTDE-----------QVMVTEEANMDDDTHHLSLNAM 1146
Query: 329 QTENEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKG 388
+ N IR T + + ++D G++ FI L L + V+ G
Sbjct: 1147RGSNGVGTIRFTGQVGGIAVKILVDGGSSDNFIQPRVAQVLKLPVEPAPNLRVLV--GNG 1320
Query: 389 SVTTSL-VCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWL--------EYNHVLINCF 439
+ ++ + + PL + G++ ++ + L +SG DVILG WL +Y + + F
Sbjct: 1321QILSAEGIVQQLPLHIQGQEVKVPVYLLQISGADVILGSTWLATLGPHVADYAALTLKFF 1500
Query: 440 SKSVHFSSVEEESGAEFLSTKQLKQLERDGILMFSLMATLSIEN----QAVIDRLP--VV 493
F +++ E +E + QL R L T SIE Q + +P +
Sbjct: 1501QND-KFITLQGEGNSE-ATQAQLHHFRR-------LQNTKSIEECFAIQLIQKEVPEDTL 1653
Query: 494 CDFPEVFPDEI--------------PDVPPEREVEFSIDLVPGTKPVSMAPYRISASELK 539
D P E+ +PP+RE + +I L G+ PV + PYR ++ K
Sbjct: 1654KDLPTNIDPELAILLHTYAQVFAVPASLPPQREQDHAIPLKQGSGPVKVRPYRYPHTQ-K 1830
Query: 540 KQLEDLLEK 548
Q+E ++++
Sbjct: 1831DQIEKMIQE 1857
>TC233976
Length = 763
Score = 57.8 bits (138), Expect = 1e-08
Identities = 36/126 (28%), Positives = 58/126 (45%), Gaps = 10/126 (7%)
Frame = +1
Query: 205 EEDTKAHYKVVNERKGKGQQ----SRPKPYSAPADK----GKQKMVDVRRPKKKDAAEI- 255
+++ A YK N GK ++ SR KPYSAP + G Q+ + +
Sbjct: 25 QQEKVAFYKNANASHGKEKKPMTHSRAKPYSAPLEYENHYGGQRTSGGHHLAGGSSQLVN 204
Query: 256 -VCFNCGEKGHKSNACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQPK 314
V G G + A +C +CG+ GH +C ++ CFN G+GH+S+ C P+
Sbjct: 205 RVSQPAGRGGSGAPAIVTTPLRCRKCGRLGHNAHECTYREVTCFNYQGKGHLSTNCPHPR 384
Query: 315 RAPTTG 320
+ +G
Sbjct: 385 KEKRSG 402
>CD487724
Length = 676
Score = 57.8 bits (138), Expect = 1e-08
Identities = 53/207 (25%), Positives = 92/207 (43%), Gaps = 22/207 (10%)
Frame = +3
Query: 347 PLVAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGR 406
PLV ++D G+TH F+ VS LGL V+ T+ +C P+S+
Sbjct: 21 PLVYLVDGGSTHNFVQQPLVSQLGLPCRSTPPLRVMVGNGHHLKCTT-ICEAIPISIQNI 197
Query: 407 DFEMDLVCLPLSGMDVILGMNWLE-YNHVLINCFSKSVHF--------SSVEEESGAEFL 457
+F + L LP+ G +++LG+ WL+ +L++ S S+ F E E+ L
Sbjct: 198 EFLVHLYVLPIVGANIVLGVQWLKTLGPILVDYNSLSMQFFYQHRLVQLKGESEAQLGLL 377
Query: 458 STKQLKQLERDGILMFSLMATLSIEN-------------QAVIDRLPVVCDFPEVFPDEI 504
+ QL++L + + + EN Q ++D+ + P+
Sbjct: 378 NHHQLRRLHQTHEPVTYFHIAILTENTSPTSSPPLPQPIQHLLDQFSALFQ*PQ------ 539
Query: 505 PDVPPEREVEFSIDLVPGTKPVSMAPY 531
+PP RE + I L+P ++PV+M Y
Sbjct: 540 -GLPPARETDHHIHLLP*SEPVNMRLY 617
>TC206178 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (69%)
Length = 1138
Score = 56.6 bits (135), Expect = 3e-08
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Frame = +2
Query: 256 VCFNCGEKGHKSNACPEEIKKCVRCGKKGHVVADCNRTDI------VCFNCNGEGHISSQ 309
+C+NC E GH +++CP E C CGK GH +C+ + +C NC +GHI+++
Sbjct: 455 LCWNCKEPGHMASSCPNE-GICHTCGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAE 631
Query: 310 CTQPK 314
CT K
Sbjct: 632 CTNEK 646
Score = 55.1 bits (131), Expect = 9e-08
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Frame = +2
Query: 207 DTKAHYKVVNERKGKGQQSRPKPYSAP--ADKGKQKMVDVRRPKKKD-AAEIVCFNCGEK 263
+ K +K+ ++ + + + P +D+ + RR ++ + + +C NC
Sbjct: 185 ERKKKWKMSSDSRSRSRSRSRSPMDRKIRSDRFSYRDAPYRRDSRRGFSRDNLCKNCKRP 364
Query: 264 GHKSNACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQPKRAPTTGR 321
GH + CP + C CG GH+ ++C T +C+NC GH++S C T G+
Sbjct: 365 GHYARECPN-VAICHNCGLPGHIASECT-TKSLCWNCKEPGHMASSCPNEGICHTCGK 532
Score = 52.4 bits (124), Expect = 6e-07
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Frame = +2
Query: 254 EIVCFNCGEKGHKSNAC------PEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHIS 307
E +C CG+ GH++ C P +++ C C K+GH+ A+C + C NC GH++
Sbjct: 506 EGICHTCGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAECT-NEKACNNCRKTGHLA 682
Query: 308 SQC 310
C
Sbjct: 683 RDC 691
Score = 41.2 bits (95), Expect = 0.001
Identities = 24/85 (28%), Positives = 30/85 (35%), Gaps = 25/85 (29%)
Frame = +2
Query: 254 EIVCFNCGEKGHKSNACPEEIKKCVRCGKKGHVVADCNRT-------------------- 293
E C NC + GH + CP + C C GHV C +
Sbjct: 641 EKACNNCRKTGHLARDCPND-PICNLCNVSGHVARQCPKANVLGDRSGGGGGGGGARGGG 817
Query: 294 -----DIVCFNCNGEGHISSQCTQP 313
D+VC NC GH+S C P
Sbjct: 818 GGGYRDVVCRNCQQLGHMSRDCMGP 892
Score = 39.3 bits (90), Expect = 0.005
Identities = 14/37 (37%), Positives = 21/37 (55%)
Frame = +2
Query: 254 EIVCFNCGEKGHKSNACPEEIKKCVRCGKKGHVVADC 290
++VC NC + GH S C + C CG +GH+ +C
Sbjct: 833 DVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYEC 943
Score = 38.9 bits (89), Expect = 0.007
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 277 CVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQC 310
C C + GH+ DC ++C NC G GH++ +C
Sbjct: 842 CRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYEC 943
>TC228935 similar to UP|Q9FHC2 (Q9FHC2) Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone:K24M7, partial (36%)
Length = 1224
Score = 52.4 bits (124), Expect = 6e-07
Identities = 23/70 (32%), Positives = 31/70 (43%), Gaps = 13/70 (18%)
Frame = +1
Query: 256 VCFNCGEKGHKSNACPE------EIKKCVRCGKKGHVVADC-------NRTDIVCFNCNG 302
+C C +GH++ CPE + K C CG+ GH + C CF CN
Sbjct: 343 ICLRCRRRGHRAKNCPEVLDGAKDAKYCYNCGENGHALTQCLHPLQEGGTKFAECFVCNQ 522
Query: 303 EGHISSQCTQ 312
GH+S C Q
Sbjct: 523 RGHLSKNCPQ 552
Score = 48.9 bits (115), Expect = 7e-06
Identities = 31/109 (28%), Positives = 46/109 (41%), Gaps = 11/109 (10%)
Frame = +1
Query: 216 NERKGKGQQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVCFNCGEKGHKSNACPEEI- 274
+++K K + S K G +K +R P K CF C H + CPE+
Sbjct: 154 DKKKKKNKNSAFKRKRPEPKPGSRKRHLLRVPGMKPGES--CFICKAMDHIAKLCPEKAE 327
Query: 275 ----KKCVRCGKKGHVVADCN------RTDIVCFNCNGEGHISSQCTQP 313
K C+RC ++GH +C + C+NC GH +QC P
Sbjct: 328 WEKNKICLRCRRRGHRAKNCPEVLDGAKDAKYCYNCGENGHALTQCLHP 474
>TC227588 similar to PIR|T00837|T00837 glycine-rich protein T13L16.11 -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(10%)
Length = 1300
Score = 48.5 bits (114), Expect = 9e-06
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +1
Query: 257 CFNCGEKGHKSNACP--EEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQPK 314
CFNCGE+GH + C + K C CG GH C++ CF C GH + C P+
Sbjct: 61 CFNCGEEGHAAVNCSAVKRKKPCYVCGCLGHNARQCSKVQ-DCFICKKGGHRAKDC--PE 231
Query: 315 RAPTTGRVFAL 325
+ +T + A+
Sbjct: 232 KHTSTSKSIAI 264
Score = 47.8 bits (112), Expect = 1e-05
Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 14/75 (18%)
Frame = +1
Query: 251 DAAEIVCFNCGEKGH-----KSNACPEEIKKCVRCGKKGHVVADCNR---------TDIV 296
D EI C+ C GH +A P EI C +CG+ GH C+R T
Sbjct: 328 DLKEIQCYVCKRLGHLCCVNTDDATPGEIS-CYKCGQLGHTGLACSRLRDEITSGATPSS 504
Query: 297 CFNCNGEGHISSQCT 311
CF C EGH + +CT
Sbjct: 505 CFKCGEEGHFARECT 549
Score = 42.7 bits (99), Expect = 5e-04
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 14/64 (21%)
Frame = +1
Query: 257 CFNCGEKGHKSNACPEE-------IKKCVRCGKKGHVVADCNR-------TDIVCFNCNG 302
CF C + GH++ CPE+ I C++CG GH + C +I C+ C
Sbjct: 184 CFICKKGGHRAKDCPEKHTSTSKSIAICLKCGNSGHDIFSCRNDYSQDDLKEIQCYVCKR 363
Query: 303 EGHI 306
GH+
Sbjct: 364 LGHL 375
Score = 32.3 bits (72), Expect = 0.64
Identities = 18/68 (26%), Positives = 28/68 (40%)
Frame = +1
Query: 257 CFNCGEKGHKSNACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQPKRA 316
CF CGE+GH + C IK R + H ++ + + + KR+
Sbjct: 505 CFKCGEEGHFARECTSSIKSGKRNWESSHTKDKRSQKENDYMGNRSASNDMVGARRKKRS 684
Query: 317 PTTGRVFA 324
PT R F+
Sbjct: 685 PTEERGFS 708
>TC206180 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (42%)
Length = 655
Score = 47.8 bits (112), Expect = 1e-05
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = +3
Query: 260 CGEKGHKSNAC------PEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQC 310
CG+ GH++ C P +++ C C K+GH+ A+C + C NC GH++ C
Sbjct: 9 CGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAECT-NEKACNNCRKTGHLARDC 176
Score = 42.4 bits (98), Expect = 6e-04
Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 22/82 (26%)
Frame = +3
Query: 254 EIVCFNCGEKGHKSNACPEEIKKCVRCGKKGHVVADCNRT-------------------- 293
E C NC + GH + CP + C C GHV C +
Sbjct: 126 EKACNNCRKTGHLARDCPND-PICNLCNVSGHVARQCPKANVLGDXXGGGGGARGGGGGG 302
Query: 294 --DIVCFNCNGEGHISSQCTQP 313
D+VC NC GH+S C P
Sbjct: 303 YRDVVCRNCQQLGHMSRDCMGP 368
Score = 39.7 bits (91), Expect = 0.004
Identities = 19/77 (24%), Positives = 29/77 (36%), Gaps = 22/77 (28%)
Frame = +3
Query: 256 VCFNCGEKGHKSNACPE----------------------EIKKCVRCGKKGHVVADCNRT 293
+C C GH + CP+ C C + GH+ DC
Sbjct: 189 ICNLCNVSGHVARQCPKANVLGDXXGGGGGARGGGGGGYRDVVCRNCQQLGHMSRDCMGP 368
Query: 294 DIVCFNCNGEGHISSQC 310
++C NC G GH++ +C
Sbjct: 369 LMICHNCGGRGHLAYEC 419
Score = 39.3 bits (90), Expect = 0.005
Identities = 14/37 (37%), Positives = 21/37 (55%)
Frame = +3
Query: 254 EIVCFNCGEKGHKSNACPEEIKKCVRCGKKGHVVADC 290
++VC NC + GH S C + C CG +GH+ +C
Sbjct: 309 DVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYEC 419
Score = 36.2 bits (82), Expect = 0.044
Identities = 15/41 (36%), Positives = 23/41 (55%), Gaps = 6/41 (14%)
Frame = +3
Query: 280 CGKKGHVVADCNRTDI------VCFNCNGEGHISSQCTQPK 314
CGK GH +C+ + +C NC +GHI+++CT K
Sbjct: 9 CGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAECTNEK 131
>CO980191
Length = 802
Score = 46.6 bits (109), Expect = 3e-05
Identities = 24/50 (48%), Positives = 30/50 (60%)
Frame = +1
Query: 107 VMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGNMSVTEYAAKFVELSK 156
V+T VF+ FL ++ ED+ K+ EFLELK GNM V Y F EL K
Sbjct: 361 VIT*EVFKEIFLEKHLHEDI*NHKKTEFLELKHGNMIVANYLVNFDELPK 510
>TC227589
Length = 547
Score = 46.2 bits (108), Expect = 4e-05
Identities = 23/64 (35%), Positives = 30/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 251 DAAEIVCFNCGEKGHKSNAC--PEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISS 308
D++ CFNCGE GH + C + K C CG GH C + CF C GH +
Sbjct: 29 DSSWGACFNCGEDGHAAVNCSAAKRKKPCYVCGGLGHNARQCTKAQ-DCFICKKGGHRAK 205
Query: 309 QCTQ 312
C +
Sbjct: 206 DCLE 217
Score = 44.3 bits (103), Expect = 2e-04
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 14/77 (18%)
Frame = +2
Query: 251 DAAEIVCFNCGEKGH-----KSNACPEEIKKCVRCGKKGHVVADCNR---------TDIV 296
D EI C+ C GH +A P EI C +CG+ GH C++ T
Sbjct: 314 DLKEIQCYVCKRVGHLCCVNTDDATPGEIS-CYKCGQLGHTGLACSKLPDEITSAATPSS 490
Query: 297 CFNCNGEGHISSQCTQP 313
C C GH + +CT P
Sbjct: 491 CCKCGEAGHFAQECTSP 541
Score = 39.7 bits (91), Expect = 0.004
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Frame = +2
Query: 236 KGKQKMVD-VRRPKKKDAAEIVCFNCGEKGHKSNAC-----PEEIK--KCVRCGKKGHVV 287
KG + D + + + + +C CG GH +C P+++K +C C + GH+
Sbjct: 185 KGGHRAKDCLEKHTSRSKSVAICLKCGNSGHDMFSCRNDYSPDDLKEIQCYVCKRVGHLC 364
Query: 288 A----DCNRTDIVCFNCNGEGHISSQCTQ 312
D +I C+ C GH C++
Sbjct: 365 CVNTDDATPGEISCYKCGQLGHTGLACSK 451
Score = 38.1 bits (87), Expect = 0.012
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Frame = +2
Query: 257 CFNCGEKGHKSNACPEE-------IKKCVRCGKKGHVVADCNR-------TDIVCFNCNG 302
CF C + GH++ C E+ + C++CG GH + C +I C+ C
Sbjct: 170 CFICKKGGHRAKDCLEKHTSRSKSVAICLKCGNSGHDMFSCRNDYSPDDLKEIQCYVCKR 349
Query: 303 EGHI 306
GH+
Sbjct: 350 VGHL 361
>CF922531
Length = 602
Score = 45.8 bits (107), Expect = 6e-05
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Frame = -2
Query: 465 LERDGILMFSLMATLSIENQAVIDRLP-----VVCDFPEVFPDEIP-DVPPEREVEFSID 518
L++ L+ S +LS I+ LP ++ +F ++FP EIP +PP R +E ID
Sbjct: 343 LKQSFYLLLSRETSLSTVTIPTIETLPPKVQELLHEFGDIFPKEIPLGLPPLRGIEHQID 164
Query: 519 LVPGTKPVSMAPYRISASELKK---QLEDLLEK 548
LVP + YR + E K+ Q+++LLEK
Sbjct: 163 LVPRASLPNRPTYRTNPQETKEIESQVKELLEK 65
>TC223754 similar to UP|Q86EQ4 (Q86EQ4) Clone ZZD1536 mRNA sequence, partial
(22%)
Length = 742
Score = 41.6 bits (96), Expect = 0.001
Identities = 22/80 (27%), Positives = 28/80 (34%), Gaps = 24/80 (30%)
Frame = +2
Query: 257 CFNCGEKGHKSNACPEEIKK---------CVRCGKKGHVVADCNRT-------------- 293
CF CG GH + C C RCG+ GH+ DC
Sbjct: 230 CFRCGGFGHMARDCATGKGNIGGGGSGGGCFRCGEVGHLARDCGMEGGRFGGGGGSGGGG 409
Query: 294 -DIVCFNCNGEGHISSQCTQ 312
CFNC GH + +C +
Sbjct: 410 GKSTCFNCGKPGHFARECVE 469
Score = 41.6 bits (96), Expect = 0.001
Identities = 17/46 (36%), Positives = 24/46 (51%), Gaps = 10/46 (21%)
Frame = +2
Query: 277 CVRCGKKGHVVADCNRTDIV----------CFNCNGEGHISSQCTQ 312
C +CG+ GH+ DCNR+ CFNC G GH++ C +
Sbjct: 44 CYQCGEFGHLARDCNRSSNSGGGGGGSGGGCFNCGGFGHLARDCVR 181
Score = 40.8 bits (94), Expect = 0.002
Identities = 23/80 (28%), Positives = 28/80 (34%), Gaps = 22/80 (27%)
Frame = +2
Query: 257 CFNCGEKGHKSNACPEEIKK----------CVRCGKKGHVVADCNRTDI----------- 295
C+ CGE GH + C C CG GH+ DC R
Sbjct: 44 CYQCGEFGHLARDCNRSSNSGGGGGGSGGGCFNCGGFGHLARDCVRGGGGSVGIGGGGGG 223
Query: 296 -VCFNCNGEGHISSQCTQPK 314
CF C G GH++ C K
Sbjct: 224 GSCFRCGGFGHMARDCATGK 283
>TC225188 similar to UP|Q9FYB7 (Q9FYB7) Splicing factor-like protein, partial
(62%)
Length = 1131
Score = 41.6 bits (96), Expect = 0.001
Identities = 22/67 (32%), Positives = 32/67 (46%), Gaps = 2/67 (2%)
Frame = +1
Query: 257 CFNCGEKGHKSNACP--EEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQPK 314
CFNCG GH + C + KC RCG++GH+ +C + + G S+
Sbjct: 364 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSP---KKLSQRGRRLSRSPVRS 534
Query: 315 RAPTTGR 321
R+P GR
Sbjct: 535 RSPRRGR 555
Score = 37.7 bits (86), Expect = 0.015
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = +1
Query: 276 KCVRCGKKGHVVADCNRTD--IVCFNCNGEGHISSQC-TQPKRAPTTGR 321
+C CG GH DC D C+ C GHI C PK+ GR
Sbjct: 361 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSQRGR 507
>TC205022 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (69%)
Length = 1623
Score = 40.8 bits (94), Expect = 0.002
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 257 CFNCGEKGHKSNACP--EEIKKCVRCGKKGHVVADCNRT 293
CFNCG GH + C + KC RCG++GH+ +C +
Sbjct: 314 CFNCGLDGHWARDCKAGDWKNKCYRCGERGHIERNCKNS 430
Score = 38.1 bits (87), Expect = 0.012
Identities = 22/79 (27%), Positives = 33/79 (40%), Gaps = 4/79 (5%)
Frame = +2
Query: 261 GEKGHKSNACPEEIKKCVRCGKKGHVVADCNRTD--IVCFNCNGEGHISSQC-TQPKRAP 317
G + + P +C CG GH DC D C+ C GHI C PK+
Sbjct: 266 GSREYLGRGPPPGSGRCFNCGLDGHWARDCKAGDWKNKCYRCGERGHIERNCKNSPKKLS 445
Query: 318 T-TGRVFALTGTQTENEDR 335
T GR ++ + ++ + R
Sbjct: 446 TRRGRSYSRSPVRSHSPRR 502
>CF922226
Length = 667
Score = 37.4 bits (85), Expect = 0.020
Identities = 26/86 (30%), Positives = 44/86 (50%), Gaps = 9/86 (10%)
Frame = -3
Query: 199 NSCRIYEEDTKAHYKVVNERK-------GKGQQSRPKPYSAPA--DKGKQKMVDVRRPKK 249
+S + E T + K +NERK G+G +R K + + DK KQK + ++ +
Sbjct: 440 DSVSLDEVQTALNSKELNERKEKKSSASGEGLTARGKTFKKDSEFDKKKQKPEN-QKNGE 264
Query: 250 KDAAEIVCFNCGEKGHKSNACPEEIK 275
+ +I C++C ++GH CPE K
Sbjct: 263 GNIFKIRCYHCKKEGHTRKVCPERQK 186
>TC218711 similar to UP|Q90Z60 (Q90Z60) Rev-Erb beta (Fragment), partial (6%)
Length = 1204
Score = 37.0 bits (84), Expect = 0.026
Identities = 25/97 (25%), Positives = 37/97 (37%), Gaps = 17/97 (17%)
Frame = -3
Query: 233 PADKGKQKMVDVRRPKKKD-----AAEIVCFNCGEKGHKSNACPE------EIKKCVRCG 281
PA K ++ D R K + + C C + GH+ C + + C CG
Sbjct: 608 PAGKTLVQITDTLRVTKSPFKHHGESSLRCRACRQPGHRFQQCQRLKCLSMDEEVCFFCG 429
Query: 282 KKGHVVADCNRTDI------VCFNCNGEGHISSQCTQ 312
+ GH + C+ + C C G GH S C Q
Sbjct: 428 EIGHSLGKCDVSQAGGGRFAKCLLCYGHGHFSYNCPQ 318
>TC217412 similar to UP|Q6L724 (Q6L724) ATP-dependent RNA helicase, partial
(3%)
Length = 868
Score = 36.2 bits (82), Expect = 0.044
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 246 RPKKKDAAEIVCFNCGEKGHKSNACP 271
RP D CFNCGE GH+++ CP
Sbjct: 279 RPSSSDRFGGTCFNCGESGHRASDCP 356
>TC217411 similar to UP|Q8L7S8 (Q8L7S8) At5g26740, partial (26%)
Length = 1275
Score = 36.2 bits (82), Expect = 0.044
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 246 RPKKKDAAEIVCFNCGEKGHKSNACP 271
RP D CFNCGE GH+++ CP
Sbjct: 783 RPSSSDRFGGACFNCGESGHRASDCP 860
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,555,512
Number of Sequences: 63676
Number of extensions: 345225
Number of successful extensions: 1902
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 1722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1841
length of query: 615
length of database: 12,639,632
effective HSP length: 103
effective length of query: 512
effective length of database: 6,081,004
effective search space: 3113474048
effective search space used: 3113474048
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Medicago: description of AC146333.2