BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146333.19 - phase: 0 /pseudo
(786 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC216906 similar to UP|Q6J732 (Q6J732) AML1, partial (19%) 265 4e-71
TC227515 similar to UP|Q9LYN7 (Q9LYN7) Mei2-like protein, partia... 254 8e-68
TC220061 similar to UP|Q6J739 (Q6J739) AML1, partial (48%) 243 2e-64
BG839847 similar to GP|19172018|gb| Mei2-like protein {Hordeum v... 125 5e-29
BE058737 homologue to GP|17064920|gb| Mei2-like protein {Arabido... 116 4e-26
TC220199 similar to UP|O65001 (O65001) Terminal ear1, partial (21%) 107 3e-23
TC217065 similar to UP|Q6J738 (Q6J738) AML5, partial (10%) 99 7e-21
TC222178 similar to UP|Q6J740 (Q6J740) AML1 (Fragment), partial ... 90 4e-18
TC230530 similar to UP|Q6J738 (Q6J738) AML5, partial (30%) 86 6e-17
AW757184 86 8e-17
TC227514 similar to UP|Q6J740 (Q6J740) AML1 (Fragment), partial ... 75 9e-14
TC216908 similar to UP|Q6J732 (Q6J732) AML1, partial (11%) 75 1e-13
TC217064 similar to UP|Q6J738 (Q6J738) AML5, partial (10%) 62 1e-09
TC216907 similar to UP|O23866 (O23866) Mei2-like protein, partia... 53 6e-07
TC212070 weakly similar to UP|Q9FXE0 (Q9FXE0) F12A21.10, partial... 50 5e-06
AW458570 similar to GP|11994255|dbj contains similarity to termi... 49 7e-06
TC214211 similar to UP|Q6R4Q7 (Q6R4Q7) Splicing factor-like prot... 45 1e-04
TC225237 similar to UP|Q9LEB4 (Q9LEB4) RNA Binding Protein 45, p... 45 2e-04
TC204823 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, part... 44 2e-04
TC214472 similar to PIR|T01932|T01932 RNA binding protein homolo... 44 2e-04
>TC216906 similar to UP|Q6J732 (Q6J732) AML1, partial (19%)
Length = 1598
Score = 265 bits (678), Expect = 4e-71
Identities = 153/310 (49%), Positives = 191/310 (61%), Gaps = 45/310 (14%)
Frame = +1
Query: 521 SNSYPPPRT---IWPNSPSYFDGIYAASTLQRLNQLPMSPSHMITTVLPTNNHHIQSPPF 577
SN + P + +W +PS+ +G + L ++ P +P H++ +H + S P
Sbjct: 7 SNLHQQPSSNAMLWQKTPSFVNGACSPG-LPQIPSFPRTPPHVLRA--SHIDHQVGSAPV 177
Query: 578 -----WDRRYTYAAEPITPHCVDF-------------------VPHNMFPHFGLN----- 608
WDR++++ E +P F HNMFPH G N
Sbjct: 178 VTASPWDRQHSFLGE--SPDASGFRLGSVGSPGFNGSWQLHPPASHNMFPHVGGNGTELT 351
Query: 609 ------VHNQRGMVFPGRNHM--INSFDTY-KRVRS----RRNVGASNLADMKRYELDID 655
Q VFPG+ M ++ FDT +R+R+ R +N AD K+Y LD+
Sbjct: 352 SNAGQGSPKQLSHVFPGKLPMTLVSKFDTTNERMRNLYSRRSEPNTNNNADKKQYVLDLG 531
Query: 656 CIKRGEDNRTTLMIKNIPNKYTSKMLLAAIDEHHKGAYDFVYLPIDFRNKCNVGYAFINM 715
I RG+DNRTTLMIKNIPNKYTSKMLL AIDE +G YDF+YLPIDF+NKCNVGYAFINM
Sbjct: 532 RILRGDDNRTTLMIKNIPNKYTSKMLLVAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINM 711
Query: 716 TSPSLIVPFYQGFNGKKWEKFNSEKVASLAYARIQGKAALVAHFQNSSLMNEDKRCRPIL 775
P I+PF++ F+GKKWEKFNSEKVA LAYARIQGK+AL+AHFQNSSLMNEDKRCRPIL
Sbjct: 712 IDPGQIIPFHKAFHGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPIL 891
Query: 776 IDTDGPNAGD 785
TDGPNAGD
Sbjct: 892 FHTDGPNAGD 921
>TC227515 similar to UP|Q9LYN7 (Q9LYN7) Mei2-like protein, partial (20%)
Length = 1308
Score = 254 bits (650), Expect = 8e-68
Identities = 135/203 (66%), Positives = 153/203 (74%), Gaps = 17/203 (8%)
Frame = +3
Query: 600 NMFPHFG-----------LNVHNQRGMVFPGRNHM--INSFD-TYKRVRS---RRNVGAS 642
NMF H G N Q VFP R+ M ++ FD + +R+R+ R+N +
Sbjct: 3 NMFSHVGGNGTELTSNAGQNSPKQLSHVFPVRHPMSSMSKFDASNERMRNLYHRKNEANT 182
Query: 643 NLADMKRYELDIDCIKRGEDNRTTLMIKNIPNKYTSKMLLAAIDEHHKGAYDFVYLPIDF 702
N D K YELD+ I RGED+RTTLMIKNIPNKYTSKMLLAAIDE KG YDF+YLPIDF
Sbjct: 183 NNVDKKLYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDF 362
Query: 703 RNKCNVGYAFINMTSPSLIVPFYQGFNGKKWEKFNSEKVASLAYARIQGKAALVAHFQNS 762
+NKCNVGYAFINM P I+PF+Q F+GKKWEKFNSEKVASLAYARIQGKA+L+AHFQNS
Sbjct: 363 KNKCNVGYAFINMIDPGQIIPFHQAFDGKKWEKFNSEKVASLAYARIQGKASLIAHFQNS 542
Query: 763 SLMNEDKRCRPILIDTDGPNAGD 785
SLMNEDKRCRPIL TDGPNAGD
Sbjct: 543 SLMNEDKRCRPILFHTDGPNAGD 611
>TC220061 similar to UP|Q6J739 (Q6J739) AML1, partial (48%)
Length = 1544
Score = 243 bits (621), Expect = 2e-64
Identities = 127/195 (65%), Positives = 145/195 (74%), Gaps = 6/195 (3%)
Frame = +1
Query: 598 PHNMFPHFGLNVHNQRGMVFPGRN-----HMINSFDTYKRVRSRRNVGASNLADMKR-YE 651
P P+F + + G +F G + N +R RSRR N D K+ Y+
Sbjct: 556 PEISSPNFRMMSLPRHGSLFHGNSLYSGPGATNIEGLAERGRSRRPENGGNQIDSKKLYQ 735
Query: 652 LDIDCIKRGEDNRTTLMIKNIPNKYTSKMLLAAIDEHHKGAYDFVYLPIDFRNKCNVGYA 711
LD+D I GED RTTLMIKNIPNKYTSKMLLAAIDE+H+G YDF+YLPIDF+NKCNVGYA
Sbjct: 736 LDLDKIVCGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYA 915
Query: 712 FINMTSPSLIVPFYQGFNGKKWEKFNSEKVASLAYARIQGKAALVAHFQNSSLMNEDKRC 771
FINM SPS I+ FY+ FNGKKWEKFNSEKVASLAYARIQGKAALV HFQNSSLMNEDKRC
Sbjct: 916 FINMVSPSHIIAFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRC 1095
Query: 772 RPILIDTDGPNAGDQ 786
RPIL ++G + GDQ
Sbjct: 1096RPILFHSEGQDTGDQ 1140
>BG839847 similar to GP|19172018|gb| Mei2-like protein {Hordeum vulgare
subsp. vulgare}, partial (8%)
Length = 541
Score = 125 bits (315), Expect = 5e-29
Identities = 60/72 (83%), Positives = 64/72 (88%)
Frame = +1
Query: 707 NVGYAFINMTSPSLIVPFYQGFNGKKWEKFNSEKVASLAYARIQGKAALVAHFQNSSLMN 766
NVGYAFINM +P LI+ FYQ FNGKKWEKFNSEKVASLAYARIQGKAAL+AHFQNSSLMN
Sbjct: 139 NVGYAFINMINPGLIILFYQVFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMN 318
Query: 767 EDKRCRPILIDT 778
EDK C+PI T
Sbjct: 319 EDKHCKPISSST 354
Score = 31.2 bits (69), Expect = 1.8
Identities = 13/19 (68%), Positives = 16/19 (83%)
Frame = +3
Query: 300 HKLIEFYDFRAADAALHGI 318
HKLIE+YD AA+AALH +
Sbjct: 3 HKLIEYYDV*AAEAALHSL 59
>BE058737 homologue to GP|17064920|gb| Mei2-like protein {Arabidopsis
thaliana}, partial (6%)
Length = 406
Score = 116 bits (290), Expect = 4e-26
Identities = 54/60 (90%), Positives = 57/60 (95%)
Frame = +2
Query: 726 QGFNGKKWEKFNSEKVASLAYARIQGKAALVAHFQNSSLMNEDKRCRPILIDTDGPNAGD 785
Q F+GKKWEKFNSEKVASLAYARIQGKA+L+AHFQNSSLMNEDKRCRPIL TDGPNAGD
Sbjct: 62 QAFDGKKWEKFNSEKVASLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGD 241
>TC220199 similar to UP|O65001 (O65001) Terminal ear1, partial (21%)
Length = 811
Score = 107 bits (266), Expect = 3e-23
Identities = 52/117 (44%), Positives = 69/117 (58%), Gaps = 15/117 (12%)
Frame = +3
Query: 674 NKYTSKMLLAAIDEHHK---------------GAYDFVYLPIDFRNKCNVGYAFINMTSP 718
NKY+ K+LL +D H + +YDFVYLPIDF NKCNVGY F+NMTSP
Sbjct: 3 NKYSQKLLLNMLDNHCRHCNEQIADGEEQQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSP 182
Query: 719 SLIVPFYQGFNGKKWEKFNSEKVASLAYARIQGKAALVAHFQNSSLMNEDKRCRPIL 775
+ Y+ F+ + WE FNS K+ + YAR+QG AL HF+NS E + P++
Sbjct: 183 EATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVV 353
>TC217065 similar to UP|Q6J738 (Q6J738) AML5, partial (10%)
Length = 414
Score = 99.0 bits (245), Expect = 7e-21
Identities = 47/60 (78%), Positives = 52/60 (86%)
Frame = +2
Query: 726 QGFNGKKWEKFNSEKVASLAYARIQGKAALVAHFQNSSLMNEDKRCRPILIDTDGPNAGD 785
Q FNGKKWEKFNSEKVASLAYARIQGK+ALV+HFQNSSLMNEDK+ PIL ++G GD
Sbjct: 149 QTFNGKKWEKFNSEKVASLAYARIQGKSALVSHFQNSSLMNEDKQYHPILFHSEGSEVGD 328
>TC222178 similar to UP|Q6J740 (Q6J740) AML1 (Fragment), partial (10%)
Length = 796
Score = 89.7 bits (221), Expect = 4e-18
Identities = 42/45 (93%), Positives = 44/45 (97%)
Frame = +3
Query: 742 ASLAYARIQGKAALVAHFQNSSLMNEDKRCRPILIDTDGPNAGDQ 786
ASLAYARIQGKAAL+AHFQNSSLMNEDKRCRPIL +TDGPNAGDQ
Sbjct: 3 ASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFNTDGPNAGDQ 137
>TC230530 similar to UP|Q6J738 (Q6J738) AML5, partial (30%)
Length = 792
Score = 85.9 bits (211), Expect = 6e-17
Identities = 45/70 (64%), Positives = 54/70 (76%), Gaps = 2/70 (2%)
Frame = +3
Query: 632 RVRSR--RNVGASNLADMKRYELDIDCIKRGEDNRTTLMIKNIPNKYTSKMLLAAIDEHH 689
R RSR N G S + K+++L++D IK GED RTTLMIKNIPN YTSKMLLAAIDE+H
Sbjct: 585 RARSRWIENNG-SQVDSKKQFQLNLDKIKSGEDTRTTLMIKNIPNXYTSKMLLAAIDENH 761
Query: 690 KGAYDFVYLP 699
+G YD +YLP
Sbjct: 762 RGTYDXLYLP 791
>AW757184
Length = 423
Score = 85.5 bits (210), Expect = 8e-17
Identities = 40/93 (43%), Positives = 59/93 (63%)
Frame = +2
Query: 261 QGTLEVFLYDSSISNTELQHILNVYGGIKEIHENPRSQRHKLIEFYDFRAADAALHGINR 320
+GTL VF D S+SN +L+ I YG +KEI E P + HK IEFYD RAA+AAL +NR
Sbjct: 2 RGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR 181
Query: 321 NDTTMKRLKVDQMQSTNSESNIIQPMHPEFKQE 353
+D KR+K++ + + N++ ++ E Q+
Sbjct: 182 SDIAGKRIKLEPSRPGGARRNLMLQLNQELDQD 280
Score = 42.7 bits (99), Expect = 6e-04
Identities = 25/81 (30%), Positives = 40/81 (48%)
Frame = +2
Query: 178 TLFVRNIDSDVKDSVLKALFEQFGDIHTFDRTCKHQGSAMISYYDIRAAQNAMRALNNRL 237
TL V N+D V + L+ +F +G++ T + I +YD+RAA+ A+++LN
Sbjct: 8 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSD 187
Query: 238 FGRKKFDIHYPIPKDSPSRNG 258
K+ K PSR G
Sbjct: 188 IAGKRI-------KLEPSRPG 229
>TC227514 similar to UP|Q6J740 (Q6J740) AML1 (Fragment), partial (10%)
Length = 828
Score = 75.5 bits (184), Expect = 9e-14
Identities = 34/39 (87%), Positives = 36/39 (92%)
Frame = +1
Query: 747 ARIQGKAALVAHFQNSSLMNEDKRCRPILIDTDGPNAGD 785
ARIQGK +L+AHFQNSSLMNEDKRCRPIL TDGPNAGD
Sbjct: 1 ARIQGKGSLIAHFQNSSLMNEDKRCRPILFHTDGPNAGD 117
>TC216908 similar to UP|Q6J732 (Q6J732) AML1, partial (11%)
Length = 1690
Score = 74.7 bits (182), Expect = 1e-13
Identities = 64/204 (31%), Positives = 90/204 (43%), Gaps = 41/204 (20%)
Frame = +2
Query: 517 HEQWSNS----YPPPRT-IWPNSPSYFDGIYAASTLQRLNQLPMSPSHMITTVLPTNNHH 571
+ W+ S PP + +W PS+ +G + L ++ +P H++ +H
Sbjct: 665 YHMWNGSNLHQQPPSNSMLWQKIPSFVNGACSPG-LPQIPSFSRTPPHVLRA--SHIDHQ 835
Query: 572 IQSPPF-----WDRRYTYAAEPITPHCVDF-------------------VPHNMFPHFGL 607
+ S P WDR++++ E +P F HN+F H G
Sbjct: 836 VGSAPVVAASPWDRQHSFLGE--SPDASGFRLGSVGSPGFHGSWQLHPPASHNIFSHVGG 1009
Query: 608 N-----------VHNQRGMVFPGRNHM-INSFDTYKRVRSRRNVGASNLADMKRYELDID 655
N Q V PGR M + S + Y R R +N AD K+Y LD+
Sbjct: 1010NGTELTSNGGQGSPKQLSHVLPGRLPMTLVSKNLYSR---RSEPNTNNNADKKQYVLDLG 1180
Query: 656 CIKRGEDNRTTLMIKNIPNKYTSK 679
I RG+DNRTTLMIKNIPNKYTSK
Sbjct: 1181RILRGDDNRTTLMIKNIPNKYTSK 1252
Score = 33.1 bits (74), Expect = 0.48
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 292 HENPRSQRHKLIEFYDFRAADAALHGINRNDTTMKRLKVD 331
+E P+ K IEFYD RAA+A+L +N K +K++
Sbjct: 2 YEYPQLNHVKFIEFYDVRAAEASLRALNGICFAGKHIKLE 121
Score = 32.3 bits (72), Expect = 0.83
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 218 ISYYDIRAAQNAMRALNNRLFGRKKFDIHYPIPK 251
I +YD+RAA+ ++RALN F K + +PK
Sbjct: 35 IEFYDVRAAEASLRALNGICFAGKHIKLEPGLPK 136
>TC217064 similar to UP|Q6J738 (Q6J738) AML5, partial (10%)
Length = 823
Score = 62.0 bits (149), Expect = 1e-09
Identities = 28/42 (66%), Positives = 34/42 (80%)
Frame = +2
Query: 744 LAYARIQGKAALVAHFQNSSLMNEDKRCRPILIDTDGPNAGD 785
+ + RIQGK+ALV+HFQNSSLMNEDKRCRPIL ++G D
Sbjct: 2 IRHQRIQGKSALVSHFQNSSLMNEDKRCRPILFHSEGSEVCD 127
>TC216907 similar to UP|O23866 (O23866) Mei2-like protein, partial (5%)
Length = 731
Score = 52.8 bits (125), Expect = 6e-07
Identities = 23/26 (88%), Positives = 24/26 (91%)
Frame = +1
Query: 760 QNSSLMNEDKRCRPILIDTDGPNAGD 785
+NSSLMNEDKRCRPIL TDGPNAGD
Sbjct: 1 KNSSLMNEDKRCRPILFHTDGPNAGD 78
>TC212070 weakly similar to UP|Q9FXE0 (Q9FXE0) F12A21.10, partial (18%)
Length = 642
Score = 49.7 bits (117), Expect = 5e-06
Identities = 22/72 (30%), Positives = 42/72 (57%)
Frame = +3
Query: 260 NQGTLEVFLYDSSISNTELQHILNVYGGIKEIHENPRSQRHKLIEFYDFRAADAALHGIN 319
NQGTL +F ++S+ +L+ + +G IKE+ + P + + +EF+D R A AL +N
Sbjct: 12 NQGTLVIFNLHPNLSSDQLRRLFQPFGPIKELRDTPWKKNQRFVEFFDIRDAAKALKHMN 191
Query: 320 RNDTTMKRLKVD 331
+ K++ ++
Sbjct: 192 GKEIDGKQVVIE 227
Score = 28.9 bits (63), Expect = 9.1
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = +3
Query: 619 GRNH---MINSFDTYKRVRSRRNVGASNLADMKRYELDIDCIKRG--EDNRTTLMIKNIP 673
GR H ++ + + RSR G R+ + D I +D RTT+MIKNIP
Sbjct: 459 GRKHTTLVVGNTKQQQVPRSRHWKGKQAKKHETRFLIKEDAIVESGPKDTRTTVMIKNIP 638
Query: 674 N 674
N
Sbjct: 639 N 641
>AW458570 similar to GP|11994255|dbj contains similarity to terminal
ear1~gene_id:MJL14.2 {Arabidopsis thaliana}, partial
(11%)
Length = 425
Score = 49.3 bits (116), Expect = 7e-06
Identities = 22/72 (30%), Positives = 41/72 (56%)
Frame = +3
Query: 260 NQGTLEVFLYDSSISNTELQHILNVYGGIKEIHENPRSQRHKLIEFYDFRAADAALHGIN 319
NQGTL +F ++S +L+ + +G IKE+ + P + + +EF+D R A AL +N
Sbjct: 24 NQGTLVIFNLHPNLSTVQLRRLFQPFGPIKELRDTPWKKNQRFVEFFDIRDAAKALKHMN 203
Query: 320 RNDTTMKRLKVD 331
+ K++ ++
Sbjct: 204 GKEIHGKQVVIE 239
>TC214211 similar to UP|Q6R4Q7 (Q6R4Q7) Splicing factor-like protein, partial
(56%)
Length = 1619
Score = 45.1 bits (105), Expect = 1e-04
Identities = 38/127 (29%), Positives = 56/127 (43%), Gaps = 12/127 (9%)
Frame = +2
Query: 177 RTLFVRNIDSDVKDSVLKALFEQFGDIHTFDRTCKHQGSAMISYYDIRAAQNAMRALNNR 236
R +F N + D + S L+ LF ++G + DR G A I D R A+ A+RAL+
Sbjct: 113 RPIFCGNFEYDARQSELERLFRRYGKV---DRVDMKSGFAFIYMEDERDAEAAIRALDRV 283
Query: 237 LFGRK-----------KFDIHYPIPKDSPSRNGVNQGTLEVFLYDSSISNT-ELQHILNV 284
FGRK + + P S NG TL V +D+ + T +L+
Sbjct: 284 EFGRKGRRLRVEWTKHERGVRKPASSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEP 463
Query: 285 YGGIKEI 291
YG I +
Sbjct: 464 YGKIVSV 484
Score = 29.6 bits (65), Expect = 5.4
Identities = 27/101 (26%), Positives = 41/101 (39%), Gaps = 1/101 (0%)
Frame = +2
Query: 159 GVRNSSIAGENSYGEHPSRTLFVRNIDS-DVKDSVLKALFEQFGDIHTFDRTCKHQGSAM 217
GVR + + +S PS+TLFV N D+ + L+ FE +G I + + A
Sbjct: 338 GVRKPASSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVS---VRIRRNFAF 508
Query: 218 ISYYDIRAAQNAMRALNNRLFGRKKFDIHYPIPKDSPSRNG 258
+ Y A A+ A N + + D RNG
Sbjct: 509 VQYESEDDASRALEATNMSKLLDRVISGEFAGKDDDDRRNG 631
>TC225237 similar to UP|Q9LEB4 (Q9LEB4) RNA Binding Protein 45, partial (79%)
Length = 1560
Score = 44.7 bits (104), Expect = 2e-04
Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 5/139 (3%)
Frame = +3
Query: 106 DLLSGVTDGNNYIICDSNGDDIDELD----LFSSNGGFDLGDVENPSSIERNSEIISGVR 161
D L+G T G ++ + + + + S +G N + + S+ + +
Sbjct: 693 DRLTGRTKGYGFVRFSDESEQVRAMTEMQGVLCSTRPMRIGPASNKTPTTQ-SQPKASYQ 869
Query: 162 NSSIAGENSYGEHPSRTLFVRNIDSDVKDSVLKALFEQFGD-IHTFDRTCKHQGSAMISY 220
NS G + + + T+FV N+D +V D L+ +F Q+G+ +H K G + +
Sbjct: 870 NSQPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGKRCG--FVQF 1043
Query: 221 YDIRAAQNAMRALNNRLFG 239
D A+ A+R LN L G
Sbjct: 1044ADRSCAEEALRVLNGTLLG 1100
>TC204823 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, partial (66%)
Length = 1596
Score = 44.3 bits (103), Expect = 2e-04
Identities = 44/198 (22%), Positives = 83/198 (41%), Gaps = 20/198 (10%)
Frame = +2
Query: 151 ERNSEIISGVRNSSIAGENSYGEHPSRT-LFVRNIDSDVKDSVLKALFEQFGDIHTFD-- 207
E + + S N AGE S+ E P LFV N+ DV L LFEQ G + +
Sbjct: 335 ETQAGLSSWEPNGEDAGEESFAEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVI 514
Query: 208 ---RTCKHQGSAMISYYDIRAAQNAMRALNNRLFGRKKFDIHYPIPK----DSPSRNGVN 260
T + +G ++ + A+NA+ + F + ++ P+ + P
Sbjct: 515 YNRETDQSRGFGFVTMSTVEEAENAVEKFSRYDFDGRLLTVNKASPRGTRPERPPPRHSF 694
Query: 261 QGTLEVFLYDS--SISNTELQHILNVYGGIKEI-----HENPRSQRHKLIEFYD---FRA 310
+ +L +++ + + NT L+ I + +G + E RS+ + D +
Sbjct: 695 EPSLSIYVGNLPWDVDNTRLEQIFSEHGNVVNARVVYDRETRRSRGFGFVTMSDETEMKD 874
Query: 311 ADAALHGINRNDTTMKRL 328
A AAL G + ++ ++ +
Sbjct: 875 AVAALDGQSMDERPIREM 928
>TC214472 similar to PIR|T01932|T01932 RNA binding protein homolog - common
tobacco (fragment) {Nicotiana tabacum;} , partial (29%)
Length = 767
Score = 44.3 bits (103), Expect = 2e-04
Identities = 25/81 (30%), Positives = 46/81 (55%), Gaps = 1/81 (1%)
Frame = +1
Query: 162 NSSIA-GENSYGEHPSRTLFVRNIDSDVKDSVLKALFEQFGDIHTFDRTCKHQGSAMISY 220
N ++A G +S G+ + T+FV +DSD D L+ F QFG++ + + +G + +
Sbjct: 136 NGAVAQGSHSEGDLNNTTIFVGGLDSDTSDEDLRQPFLQFGEVVSV-KIPVGKGCGFVQF 312
Query: 221 YDIRAAQNAMRALNNRLFGRK 241
D + A+ A+ ALN + G++
Sbjct: 313 ADRKNAEEAIHALNGTVIGKQ 375
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.139 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,084,888
Number of Sequences: 63676
Number of extensions: 554335
Number of successful extensions: 3712
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 3659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3707
length of query: 786
length of database: 12,639,632
effective HSP length: 105
effective length of query: 681
effective length of database: 5,953,652
effective search space: 4054437012
effective search space used: 4054437012
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)
Medicago: description of AC146333.19