Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146333.19 - phase: 0 /pseudo
         (786 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC216906 similar to UP|Q6J732 (Q6J732) AML1, partial (19%)            265  4e-71
TC227515 similar to UP|Q9LYN7 (Q9LYN7) Mei2-like protein, partia...   254  8e-68
TC220061 similar to UP|Q6J739 (Q6J739) AML1, partial (48%)            243  2e-64
BG839847 similar to GP|19172018|gb| Mei2-like protein {Hordeum v...   125  5e-29
BE058737 homologue to GP|17064920|gb| Mei2-like protein {Arabido...   116  4e-26
TC220199 similar to UP|O65001 (O65001) Terminal ear1, partial (21%)   107  3e-23
TC217065 similar to UP|Q6J738 (Q6J738) AML5, partial (10%)             99  7e-21
TC222178 similar to UP|Q6J740 (Q6J740) AML1 (Fragment), partial ...    90  4e-18
TC230530 similar to UP|Q6J738 (Q6J738) AML5, partial (30%)             86  6e-17
AW757184                                                               86  8e-17
TC227514 similar to UP|Q6J740 (Q6J740) AML1 (Fragment), partial ...    75  9e-14
TC216908 similar to UP|Q6J732 (Q6J732) AML1, partial (11%)             75  1e-13
TC217064 similar to UP|Q6J738 (Q6J738) AML5, partial (10%)             62  1e-09
TC216907 similar to UP|O23866 (O23866) Mei2-like protein, partia...    53  6e-07
TC212070 weakly similar to UP|Q9FXE0 (Q9FXE0) F12A21.10, partial...    50  5e-06
AW458570 similar to GP|11994255|dbj contains similarity to termi...    49  7e-06
TC214211 similar to UP|Q6R4Q7 (Q6R4Q7) Splicing factor-like prot...    45  1e-04
TC225237 similar to UP|Q9LEB4 (Q9LEB4) RNA Binding Protein 45, p...    45  2e-04
TC204823 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, part...    44  2e-04
TC214472 similar to PIR|T01932|T01932 RNA binding protein homolo...    44  2e-04

>TC216906 similar to UP|Q6J732 (Q6J732) AML1, partial (19%)
          Length = 1598

 Score =  265 bits (678), Expect = 4e-71
 Identities = 153/310 (49%), Positives = 191/310 (61%), Gaps = 45/310 (14%)
 Frame = +1

Query: 521 SNSYPPPRT---IWPNSPSYFDGIYAASTLQRLNQLPMSPSHMITTVLPTNNHHIQSPPF 577
           SN +  P +   +W  +PS+ +G  +   L ++   P +P H++       +H + S P 
Sbjct: 7   SNLHQQPSSNAMLWQKTPSFVNGACSPG-LPQIPSFPRTPPHVLRA--SHIDHQVGSAPV 177

Query: 578 -----WDRRYTYAAEPITPHCVDF-------------------VPHNMFPHFGLN----- 608
                WDR++++  E  +P    F                     HNMFPH G N     
Sbjct: 178 VTASPWDRQHSFLGE--SPDASGFRLGSVGSPGFNGSWQLHPPASHNMFPHVGGNGTELT 351

Query: 609 ------VHNQRGMVFPGRNHM--INSFDTY-KRVRS----RRNVGASNLADMKRYELDID 655
                    Q   VFPG+  M  ++ FDT  +R+R+    R     +N AD K+Y LD+ 
Sbjct: 352 SNAGQGSPKQLSHVFPGKLPMTLVSKFDTTNERMRNLYSRRSEPNTNNNADKKQYVLDLG 531

Query: 656 CIKRGEDNRTTLMIKNIPNKYTSKMLLAAIDEHHKGAYDFVYLPIDFRNKCNVGYAFINM 715
            I RG+DNRTTLMIKNIPNKYTSKMLL AIDE  +G YDF+YLPIDF+NKCNVGYAFINM
Sbjct: 532 RILRGDDNRTTLMIKNIPNKYTSKMLLVAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINM 711

Query: 716 TSPSLIVPFYQGFNGKKWEKFNSEKVASLAYARIQGKAALVAHFQNSSLMNEDKRCRPIL 775
             P  I+PF++ F+GKKWEKFNSEKVA LAYARIQGK+AL+AHFQNSSLMNEDKRCRPIL
Sbjct: 712 IDPGQIIPFHKAFHGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPIL 891

Query: 776 IDTDGPNAGD 785
             TDGPNAGD
Sbjct: 892 FHTDGPNAGD 921


>TC227515 similar to UP|Q9LYN7 (Q9LYN7) Mei2-like protein, partial (20%)
          Length = 1308

 Score =  254 bits (650), Expect = 8e-68
 Identities = 135/203 (66%), Positives = 153/203 (74%), Gaps = 17/203 (8%)
 Frame = +3

Query: 600 NMFPHFG-----------LNVHNQRGMVFPGRNHM--INSFD-TYKRVRS---RRNVGAS 642
           NMF H G            N   Q   VFP R+ M  ++ FD + +R+R+   R+N   +
Sbjct: 3   NMFSHVGGNGTELTSNAGQNSPKQLSHVFPVRHPMSSMSKFDASNERMRNLYHRKNEANT 182

Query: 643 NLADMKRYELDIDCIKRGEDNRTTLMIKNIPNKYTSKMLLAAIDEHHKGAYDFVYLPIDF 702
           N  D K YELD+  I RGED+RTTLMIKNIPNKYTSKMLLAAIDE  KG YDF+YLPIDF
Sbjct: 183 NNVDKKLYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDF 362

Query: 703 RNKCNVGYAFINMTSPSLIVPFYQGFNGKKWEKFNSEKVASLAYARIQGKAALVAHFQNS 762
           +NKCNVGYAFINM  P  I+PF+Q F+GKKWEKFNSEKVASLAYARIQGKA+L+AHFQNS
Sbjct: 363 KNKCNVGYAFINMIDPGQIIPFHQAFDGKKWEKFNSEKVASLAYARIQGKASLIAHFQNS 542

Query: 763 SLMNEDKRCRPILIDTDGPNAGD 785
           SLMNEDKRCRPIL  TDGPNAGD
Sbjct: 543 SLMNEDKRCRPILFHTDGPNAGD 611


>TC220061 similar to UP|Q6J739 (Q6J739) AML1, partial (48%)
          Length = 1544

 Score =  243 bits (621), Expect = 2e-64
 Identities = 127/195 (65%), Positives = 145/195 (74%), Gaps = 6/195 (3%)
 Frame = +1

Query: 598 PHNMFPHFGLNVHNQRGMVFPGRN-----HMINSFDTYKRVRSRRNVGASNLADMKR-YE 651
           P    P+F +    + G +F G +        N     +R RSRR     N  D K+ Y+
Sbjct: 556 PEISSPNFRMMSLPRHGSLFHGNSLYSGPGATNIEGLAERGRSRRPENGGNQIDSKKLYQ 735

Query: 652 LDIDCIKRGEDNRTTLMIKNIPNKYTSKMLLAAIDEHHKGAYDFVYLPIDFRNKCNVGYA 711
           LD+D I  GED RTTLMIKNIPNKYTSKMLLAAIDE+H+G YDF+YLPIDF+NKCNVGYA
Sbjct: 736 LDLDKIVCGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYA 915

Query: 712 FINMTSPSLIVPFYQGFNGKKWEKFNSEKVASLAYARIQGKAALVAHFQNSSLMNEDKRC 771
           FINM SPS I+ FY+ FNGKKWEKFNSEKVASLAYARIQGKAALV HFQNSSLMNEDKRC
Sbjct: 916 FINMVSPSHIIAFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRC 1095

Query: 772 RPILIDTDGPNAGDQ 786
           RPIL  ++G + GDQ
Sbjct: 1096RPILFHSEGQDTGDQ 1140


>BG839847 similar to GP|19172018|gb| Mei2-like protein {Hordeum vulgare
           subsp. vulgare}, partial (8%)
          Length = 541

 Score =  125 bits (315), Expect = 5e-29
 Identities = 60/72 (83%), Positives = 64/72 (88%)
 Frame = +1

Query: 707 NVGYAFINMTSPSLIVPFYQGFNGKKWEKFNSEKVASLAYARIQGKAALVAHFQNSSLMN 766
           NVGYAFINM +P LI+ FYQ FNGKKWEKFNSEKVASLAYARIQGKAAL+AHFQNSSLMN
Sbjct: 139 NVGYAFINMINPGLIILFYQVFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMN 318

Query: 767 EDKRCRPILIDT 778
           EDK C+PI   T
Sbjct: 319 EDKHCKPISSST 354



 Score = 31.2 bits (69), Expect = 1.8
 Identities = 13/19 (68%), Positives = 16/19 (83%)
 Frame = +3

Query: 300 HKLIEFYDFRAADAALHGI 318
           HKLIE+YD  AA+AALH +
Sbjct: 3   HKLIEYYDV*AAEAALHSL 59


>BE058737 homologue to GP|17064920|gb| Mei2-like protein {Arabidopsis
           thaliana}, partial (6%)
          Length = 406

 Score =  116 bits (290), Expect = 4e-26
 Identities = 54/60 (90%), Positives = 57/60 (95%)
 Frame = +2

Query: 726 QGFNGKKWEKFNSEKVASLAYARIQGKAALVAHFQNSSLMNEDKRCRPILIDTDGPNAGD 785
           Q F+GKKWEKFNSEKVASLAYARIQGKA+L+AHFQNSSLMNEDKRCRPIL  TDGPNAGD
Sbjct: 62  QAFDGKKWEKFNSEKVASLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGD 241


>TC220199 similar to UP|O65001 (O65001) Terminal ear1, partial (21%)
          Length = 811

 Score =  107 bits (266), Expect = 3e-23
 Identities = 52/117 (44%), Positives = 69/117 (58%), Gaps = 15/117 (12%)
 Frame = +3

Query: 674 NKYTSKMLLAAIDEHHK---------------GAYDFVYLPIDFRNKCNVGYAFINMTSP 718
           NKY+ K+LL  +D H +                +YDFVYLPIDF NKCNVGY F+NMTSP
Sbjct: 3   NKYSQKLLLNMLDNHCRHCNEQIADGEEQQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSP 182

Query: 719 SLIVPFYQGFNGKKWEKFNSEKVASLAYARIQGKAALVAHFQNSSLMNEDKRCRPIL 775
              +  Y+ F+ + WE FNS K+  + YAR+QG  AL  HF+NS    E +   P++
Sbjct: 183 EATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVV 353


>TC217065 similar to UP|Q6J738 (Q6J738) AML5, partial (10%)
          Length = 414

 Score = 99.0 bits (245), Expect = 7e-21
 Identities = 47/60 (78%), Positives = 52/60 (86%)
 Frame = +2

Query: 726 QGFNGKKWEKFNSEKVASLAYARIQGKAALVAHFQNSSLMNEDKRCRPILIDTDGPNAGD 785
           Q FNGKKWEKFNSEKVASLAYARIQGK+ALV+HFQNSSLMNEDK+  PIL  ++G   GD
Sbjct: 149 QTFNGKKWEKFNSEKVASLAYARIQGKSALVSHFQNSSLMNEDKQYHPILFHSEGSEVGD 328


>TC222178 similar to UP|Q6J740 (Q6J740) AML1 (Fragment), partial (10%)
          Length = 796

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 42/45 (93%), Positives = 44/45 (97%)
 Frame = +3

Query: 742 ASLAYARIQGKAALVAHFQNSSLMNEDKRCRPILIDTDGPNAGDQ 786
           ASLAYARIQGKAAL+AHFQNSSLMNEDKRCRPIL +TDGPNAGDQ
Sbjct: 3   ASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFNTDGPNAGDQ 137


>TC230530 similar to UP|Q6J738 (Q6J738) AML5, partial (30%)
          Length = 792

 Score = 85.9 bits (211), Expect = 6e-17
 Identities = 45/70 (64%), Positives = 54/70 (76%), Gaps = 2/70 (2%)
 Frame = +3

Query: 632 RVRSR--RNVGASNLADMKRYELDIDCIKRGEDNRTTLMIKNIPNKYTSKMLLAAIDEHH 689
           R RSR   N G S +   K+++L++D IK GED RTTLMIKNIPN YTSKMLLAAIDE+H
Sbjct: 585 RARSRWIENNG-SQVDSKKQFQLNLDKIKSGEDTRTTLMIKNIPNXYTSKMLLAAIDENH 761

Query: 690 KGAYDFVYLP 699
           +G YD +YLP
Sbjct: 762 RGTYDXLYLP 791


>AW757184 
          Length = 423

 Score = 85.5 bits (210), Expect = 8e-17
 Identities = 40/93 (43%), Positives = 59/93 (63%)
 Frame = +2

Query: 261 QGTLEVFLYDSSISNTELQHILNVYGGIKEIHENPRSQRHKLIEFYDFRAADAALHGINR 320
           +GTL VF  D S+SN +L+ I   YG +KEI E P  + HK IEFYD RAA+AAL  +NR
Sbjct: 2   RGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR 181

Query: 321 NDTTMKRLKVDQMQSTNSESNIIQPMHPEFKQE 353
           +D   KR+K++  +   +  N++  ++ E  Q+
Sbjct: 182 SDIAGKRIKLEPSRPGGARRNLMLQLNQELDQD 280



 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 25/81 (30%), Positives = 40/81 (48%)
 Frame = +2

Query: 178 TLFVRNIDSDVKDSVLKALFEQFGDIHTFDRTCKHQGSAMISYYDIRAAQNAMRALNNRL 237
           TL V N+D  V +  L+ +F  +G++     T   +    I +YD+RAA+ A+++LN   
Sbjct: 8   TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSD 187

Query: 238 FGRKKFDIHYPIPKDSPSRNG 258
              K+        K  PSR G
Sbjct: 188 IAGKRI-------KLEPSRPG 229


>TC227514 similar to UP|Q6J740 (Q6J740) AML1 (Fragment), partial (10%)
          Length = 828

 Score = 75.5 bits (184), Expect = 9e-14
 Identities = 34/39 (87%), Positives = 36/39 (92%)
 Frame = +1

Query: 747 ARIQGKAALVAHFQNSSLMNEDKRCRPILIDTDGPNAGD 785
           ARIQGK +L+AHFQNSSLMNEDKRCRPIL  TDGPNAGD
Sbjct: 1   ARIQGKGSLIAHFQNSSLMNEDKRCRPILFHTDGPNAGD 117


>TC216908 similar to UP|Q6J732 (Q6J732) AML1, partial (11%)
          Length = 1690

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 64/204 (31%), Positives = 90/204 (43%), Gaps = 41/204 (20%)
 Frame = +2

Query: 517 HEQWSNS----YPPPRT-IWPNSPSYFDGIYAASTLQRLNQLPMSPSHMITTVLPTNNHH 571
           +  W+ S     PP  + +W   PS+ +G  +   L ++     +P H++       +H 
Sbjct: 665 YHMWNGSNLHQQPPSNSMLWQKIPSFVNGACSPG-LPQIPSFSRTPPHVLRA--SHIDHQ 835

Query: 572 IQSPPF-----WDRRYTYAAEPITPHCVDF-------------------VPHNMFPHFGL 607
           + S P      WDR++++  E  +P    F                     HN+F H G 
Sbjct: 836 VGSAPVVAASPWDRQHSFLGE--SPDASGFRLGSVGSPGFHGSWQLHPPASHNIFSHVGG 1009

Query: 608 N-----------VHNQRGMVFPGRNHM-INSFDTYKRVRSRRNVGASNLADMKRYELDID 655
           N              Q   V PGR  M + S + Y R   R     +N AD K+Y LD+ 
Sbjct: 1010NGTELTSNGGQGSPKQLSHVLPGRLPMTLVSKNLYSR---RSEPNTNNNADKKQYVLDLG 1180

Query: 656 CIKRGEDNRTTLMIKNIPNKYTSK 679
            I RG+DNRTTLMIKNIPNKYTSK
Sbjct: 1181RILRGDDNRTTLMIKNIPNKYTSK 1252



 Score = 33.1 bits (74), Expect = 0.48
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +2

Query: 292 HENPRSQRHKLIEFYDFRAADAALHGINRNDTTMKRLKVD 331
           +E P+    K IEFYD RAA+A+L  +N      K +K++
Sbjct: 2   YEYPQLNHVKFIEFYDVRAAEASLRALNGICFAGKHIKLE 121



 Score = 32.3 bits (72), Expect = 0.83
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 218 ISYYDIRAAQNAMRALNNRLFGRKKFDIHYPIPK 251
           I +YD+RAA+ ++RALN   F  K   +   +PK
Sbjct: 35  IEFYDVRAAEASLRALNGICFAGKHIKLEPGLPK 136


>TC217064 similar to UP|Q6J738 (Q6J738) AML5, partial (10%)
          Length = 823

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 28/42 (66%), Positives = 34/42 (80%)
 Frame = +2

Query: 744 LAYARIQGKAALVAHFQNSSLMNEDKRCRPILIDTDGPNAGD 785
           + + RIQGK+ALV+HFQNSSLMNEDKRCRPIL  ++G    D
Sbjct: 2   IRHQRIQGKSALVSHFQNSSLMNEDKRCRPILFHSEGSEVCD 127


>TC216907 similar to UP|O23866 (O23866) Mei2-like protein, partial (5%)
          Length = 731

 Score = 52.8 bits (125), Expect = 6e-07
 Identities = 23/26 (88%), Positives = 24/26 (91%)
 Frame = +1

Query: 760 QNSSLMNEDKRCRPILIDTDGPNAGD 785
           +NSSLMNEDKRCRPIL  TDGPNAGD
Sbjct: 1   KNSSLMNEDKRCRPILFHTDGPNAGD 78


>TC212070 weakly similar to UP|Q9FXE0 (Q9FXE0) F12A21.10, partial (18%)
          Length = 642

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 22/72 (30%), Positives = 42/72 (57%)
 Frame = +3

Query: 260 NQGTLEVFLYDSSISNTELQHILNVYGGIKEIHENPRSQRHKLIEFYDFRAADAALHGIN 319
           NQGTL +F    ++S+ +L+ +   +G IKE+ + P  +  + +EF+D R A  AL  +N
Sbjct: 12  NQGTLVIFNLHPNLSSDQLRRLFQPFGPIKELRDTPWKKNQRFVEFFDIRDAAKALKHMN 191

Query: 320 RNDTTMKRLKVD 331
             +   K++ ++
Sbjct: 192 GKEIDGKQVVIE 227



 Score = 28.9 bits (63), Expect = 9.1
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +3

Query: 619 GRNH---MINSFDTYKRVRSRRNVGASNLADMKRYELDIDCIKRG--EDNRTTLMIKNIP 673
           GR H   ++ +    +  RSR   G        R+ +  D I     +D RTT+MIKNIP
Sbjct: 459 GRKHTTLVVGNTKQQQVPRSRHWKGKQAKKHETRFLIKEDAIVESGPKDTRTTVMIKNIP 638

Query: 674 N 674
           N
Sbjct: 639 N 641


>AW458570 similar to GP|11994255|dbj contains similarity to terminal
           ear1~gene_id:MJL14.2 {Arabidopsis thaliana}, partial
           (11%)
          Length = 425

 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 22/72 (30%), Positives = 41/72 (56%)
 Frame = +3

Query: 260 NQGTLEVFLYDSSISNTELQHILNVYGGIKEIHENPRSQRHKLIEFYDFRAADAALHGIN 319
           NQGTL +F    ++S  +L+ +   +G IKE+ + P  +  + +EF+D R A  AL  +N
Sbjct: 24  NQGTLVIFNLHPNLSTVQLRRLFQPFGPIKELRDTPWKKNQRFVEFFDIRDAAKALKHMN 203

Query: 320 RNDTTMKRLKVD 331
             +   K++ ++
Sbjct: 204 GKEIHGKQVVIE 239


>TC214211 similar to UP|Q6R4Q7 (Q6R4Q7) Splicing factor-like protein, partial
           (56%)
          Length = 1619

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 38/127 (29%), Positives = 56/127 (43%), Gaps = 12/127 (9%)
 Frame = +2

Query: 177 RTLFVRNIDSDVKDSVLKALFEQFGDIHTFDRTCKHQGSAMISYYDIRAAQNAMRALNNR 236
           R +F  N + D + S L+ LF ++G +   DR     G A I   D R A+ A+RAL+  
Sbjct: 113 RPIFCGNFEYDARQSELERLFRRYGKV---DRVDMKSGFAFIYMEDERDAEAAIRALDRV 283

Query: 237 LFGRK-----------KFDIHYPIPKDSPSRNGVNQGTLEVFLYDSSISNT-ELQHILNV 284
            FGRK           +  +  P      S NG    TL V  +D+  + T +L+     
Sbjct: 284 EFGRKGRRLRVEWTKHERGVRKPASSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEP 463

Query: 285 YGGIKEI 291
           YG I  +
Sbjct: 464 YGKIVSV 484



 Score = 29.6 bits (65), Expect = 5.4
 Identities = 27/101 (26%), Positives = 41/101 (39%), Gaps = 1/101 (0%)
 Frame = +2

Query: 159 GVRNSSIAGENSYGEHPSRTLFVRNIDS-DVKDSVLKALFEQFGDIHTFDRTCKHQGSAM 217
           GVR  + +  +S    PS+TLFV N D+   +   L+  FE +G I +       +  A 
Sbjct: 338 GVRKPASSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVS---VRIRRNFAF 508

Query: 218 ISYYDIRAAQNAMRALNNRLFGRKKFDIHYPIPKDSPSRNG 258
           + Y     A  A+ A N      +     +    D   RNG
Sbjct: 509 VQYESEDDASRALEATNMSKLLDRVISGEFAGKDDDDRRNG 631


>TC225237 similar to UP|Q9LEB4 (Q9LEB4) RNA Binding Protein 45, partial (79%)
          Length = 1560

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 5/139 (3%)
 Frame = +3

Query: 106 DLLSGVTDGNNYIICDSNGDDIDELD----LFSSNGGFDLGDVENPSSIERNSEIISGVR 161
           D L+G T G  ++      + +  +     +  S     +G   N +   + S+  +  +
Sbjct: 693 DRLTGRTKGYGFVRFSDESEQVRAMTEMQGVLCSTRPMRIGPASNKTPTTQ-SQPKASYQ 869

Query: 162 NSSIAGENSYGEHPSRTLFVRNIDSDVKDSVLKALFEQFGD-IHTFDRTCKHQGSAMISY 220
           NS   G  +  +  + T+FV N+D +V D  L+ +F Q+G+ +H      K  G   + +
Sbjct: 870 NSQPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGKRCG--FVQF 1043

Query: 221 YDIRAAQNAMRALNNRLFG 239
            D   A+ A+R LN  L G
Sbjct: 1044ADRSCAEEALRVLNGTLLG 1100


>TC204823 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, partial (66%)
          Length = 1596

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 44/198 (22%), Positives = 83/198 (41%), Gaps = 20/198 (10%)
 Frame = +2

Query: 151 ERNSEIISGVRNSSIAGENSYGEHPSRT-LFVRNIDSDVKDSVLKALFEQFGDIHTFD-- 207
           E  + + S   N   AGE S+ E P    LFV N+  DV    L  LFEQ G +   +  
Sbjct: 335 ETQAGLSSWEPNGEDAGEESFAEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVI 514

Query: 208 ---RTCKHQGSAMISYYDIRAAQNAMRALNNRLFGRKKFDIHYPIPK----DSPSRNGVN 260
               T + +G   ++   +  A+NA+   +   F  +   ++   P+    + P      
Sbjct: 515 YNRETDQSRGFGFVTMSTVEEAENAVEKFSRYDFDGRLLTVNKASPRGTRPERPPPRHSF 694

Query: 261 QGTLEVFLYDS--SISNTELQHILNVYGGIKEI-----HENPRSQRHKLIEFYD---FRA 310
           + +L +++ +    + NT L+ I + +G +         E  RS+    +   D    + 
Sbjct: 695 EPSLSIYVGNLPWDVDNTRLEQIFSEHGNVVNARVVYDRETRRSRGFGFVTMSDETEMKD 874

Query: 311 ADAALHGINRNDTTMKRL 328
           A AAL G + ++  ++ +
Sbjct: 875 AVAALDGQSMDERPIREM 928


>TC214472 similar to PIR|T01932|T01932 RNA binding protein homolog - common
           tobacco (fragment) {Nicotiana tabacum;} , partial (29%)
          Length = 767

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 25/81 (30%), Positives = 46/81 (55%), Gaps = 1/81 (1%)
 Frame = +1

Query: 162 NSSIA-GENSYGEHPSRTLFVRNIDSDVKDSVLKALFEQFGDIHTFDRTCKHQGSAMISY 220
           N ++A G +S G+  + T+FV  +DSD  D  L+  F QFG++ +  +    +G   + +
Sbjct: 136 NGAVAQGSHSEGDLNNTTIFVGGLDSDTSDEDLRQPFLQFGEVVSV-KIPVGKGCGFVQF 312

Query: 221 YDIRAAQNAMRALNNRLFGRK 241
            D + A+ A+ ALN  + G++
Sbjct: 313 ADRKNAEEAIHALNGTVIGKQ 375


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.324    0.139    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,084,888
Number of Sequences: 63676
Number of extensions: 554335
Number of successful extensions: 3712
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 3659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3707
length of query: 786
length of database: 12,639,632
effective HSP length: 105
effective length of query: 681
effective length of database: 5,953,652
effective search space: 4054437012
effective search space used: 4054437012
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)


Medicago: description of AC146333.19