BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146332.8 - phase: 0 /pseudo
(199 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC213528 39 0.001
TC215913 similar to GB|AAS09986.1|41618940|AY519516 MYB transcri... 32 0.25
TC227901 weakly similar to UP|Q94JT3 (Q94JT3) AT5g49230/K21P3_11... 31 0.43
BF595056 30 0.56
TC206868 similar to UP|PEX2_ARATH (Q9CA86) Peroxisome assembly p... 30 0.73
TC214869 similar to UP|XTHA_PHAAN (Q41638) Xyloglucan endotransg... 30 0.73
TC214868 homologue to UP|XTHA_PHAAN (Q41638) Xyloglucan endotran... 30 0.96
TC214867 UP|XTH_SOYBN (Q39857) Probable xyloglucan endotransgluc... 30 0.96
TC214865 homologue to UP|XTHA_PHAAN (Q41638) Xyloglucan endotran... 30 0.96
TC204740 similar to UP|Q40478 (Q40478) Ethylene-responsive eleme... 29 1.6
TC216950 28 2.1
TC209944 weakly similar to UP|Q9NP08 (Q9NP08) H6 homeodomain pro... 28 2.1
TC215732 similar to UP|Q9LSN7 (Q9LSN7) Gb|AAC24081.1 (AT3g17100/... 28 2.1
BM499229 similar to GP|22652121|gb BEL1-related homeotic protein... 28 2.8
CD395254 similar to GP|17979464|gb| At1g68530/T26J14_10 {Arabido... 28 3.6
TC231372 similar to GB|AAH57771.1|34785931|BC057771 MGC40405 pro... 27 4.8
CD401364 weakly similar to GP|13774348|gb histidine-containing p... 27 4.8
TC234087 homologue to UP|Q6T2Z8 (Q6T2Z8) Cyclin-dependent kinase... 27 4.8
TC229289 similar to GB|AAL47398.1|17978853|AY066031 AT4g38060/F2... 27 4.8
CF922367 27 4.8
>TC213528
Length = 319
Score = 39.3 bits (90), Expect = 0.001
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = -1
Query: 149 FSERTKGIEVDGCKRNVSDLSHQFHFVDPYFRGMDAGCNADLIE 192
F +R KG+E CKR VS SHQ D Y +DA +A+ IE
Sbjct: 280 FVQRMKGLEGGSCKRRVSRFSHQLLSGDYYLDALDAHSSANFIE 149
>TC215913 similar to GB|AAS09986.1|41618940|AY519516 MYB transcription factor
{Arabidopsis thaliana;} , partial (66%)
Length = 1545
Score = 31.6 bits (70), Expect = 0.25
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = +2
Query: 51 PAPMWKTSSKSPSMATHHHHAMKKTALHSSRTGLPFKEKKEISVSARKLAATLWEINDLT 110
P P W S P+ H +K TA+HS P + + +S L + I D
Sbjct: 938 PLPYWSGYSPEPTKKEETHEVLKPTAVHSKS---PINVDELVGISKLSLGES---IGDSG 1099
Query: 111 PSRIKKESMKSNKER 125
PS + ++ ++ R
Sbjct: 1100 PSTLSRKLIEEGPSR 1144
>TC227901 weakly similar to UP|Q94JT3 (Q94JT3) AT5g49230/K21P3_11, partial
(27%)
Length = 1335
Score = 30.8 bits (68), Expect = 0.43
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 57 TSSKSPSMATHHHHAMKKTALHS 79
T +K+PSMA HHHH LH+
Sbjct: 174 TFTKTPSMAVHHHHKYMVLQLHA 106
>BF595056
Length = 421
Score = 30.4 bits (67), Expect = 0.56
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Frame = +1
Query: 13 HNKIRKRGCSSTSSSSPFSR--RYRFKRAILMGKKSGYNTPAPMWKTSSKSPSMATHHHH 70
+NK++ +G S+SSSS R K+ I+ S NT P +SS S T
Sbjct: 82 NNKVQNKGLLSSSSSSSSVRIEEEIMKQGIITILNSNTNTNTP--SSSSSSSLRRTLSAD 255
Query: 71 AMKKTALHSSRTGLPFKEKKEISVSARKLAATLWEINDLTPSRIKKESMKSN 122
K LH+ KE+++ A + +W + R KKE + +
Sbjct: 256 MSSKNYLHAKTIADSEKEEEDDEDEAERERLEIWS----SIQRNKKEEQEKS 399
>TC206868 similar to UP|PEX2_ARATH (Q9CA86) Peroxisome assembly protein 2
(Peroxin-2) (AthPEX2) (Pex2p), partial (86%)
Length = 1490
Score = 30.0 bits (66), Expect = 0.73
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +1
Query: 62 PSMATHHHHAMKKTA----LHSSRTGLPFKEKKEISVSARKLAATLWEINDLTPSRIKKE 117
P+ HHHHAM + +H+S T LP + + L ++ +N + +R+ E
Sbjct: 88 PNQNHHHHHAMTLPSHDAWIHTSHTLLPRWKSLSLPHQQSTLPISISRVNQVDAARLDVE 267
Query: 118 SMKSNKER 125
KE+
Sbjct: 268 MSAMLKEQ 291
>TC214869 similar to UP|XTHA_PHAAN (Q41638) Xyloglucan
endotransglucosylase/hydrolase protein A precursor
(VaXTH1) , partial (33%)
Length = 449
Score = 30.0 bits (66), Expect = 0.73
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +1
Query: 138 GPQKLDPLVSPFSERTKGIEVDGCKRNVS----DLSHQFHFVDPYFRGMDA 184
G +K D +PF KG +DGC+ +V+ D + + P FR +DA
Sbjct: 22 GLEKTDWSKAPFIAAYKGFHIDGCEASVNAKFCDTQGKSWWDQPEFRDLDA 174
>TC214868 homologue to UP|XTHA_PHAAN (Q41638) Xyloglucan
endotransglucosylase/hydrolase protein A precursor
(VaXTH1) , partial (39%)
Length = 706
Score = 29.6 bits (65), Expect = 0.96
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +2
Query: 138 GPQKLDPLVSPFSERTKGIEVDGCKRNVS----DLSHQFHFVDPYFRGMDA 184
G +K D +PF KG +DGC+ +V+ D + + P FR +DA
Sbjct: 80 GLEKTDWSKAPFIASYKGFHIDGCEASVNAKFCDTQGKRWWDQPEFRDLDA 232
>TC214867 UP|XTH_SOYBN (Q39857) Probable xyloglucan
endotransglucosylase/hydrolase precursor (Fragment) ,
complete
Length = 1200
Score = 29.6 bits (65), Expect = 0.96
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +3
Query: 138 GPQKLDPLVSPFSERTKGIEVDGCKRNVS----DLSHQFHFVDPYFRGMDA 184
G +K D +PF KG +DGC+ +V+ D + + P FR +DA
Sbjct: 717 GLEKTDWSKAPFIAAYKGFHIDGCEASVNAKFCDTQGKRWWDQPEFRDLDA 869
>TC214865 homologue to UP|XTHA_PHAAN (Q41638) Xyloglucan
endotransglucosylase/hydrolase protein A precursor
(VaXTH1) , complete
Length = 1243
Score = 29.6 bits (65), Expect = 0.96
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +1
Query: 138 GPQKLDPLVSPFSERTKGIEVDGCKRNVS----DLSHQFHFVDPYFRGMDA 184
G +K D +PF KG +DGC+ +V+ D + + P FR +DA
Sbjct: 640 GLEKTDWSKAPFVASYKGFHIDGCEASVNAKFCDTQGKRWWDQPEFRDLDA 792
>TC204740 similar to UP|Q40478 (Q40478) Ethylene-responsive element binding
protein, partial (26%)
Length = 1370
Score = 28.9 bits (63), Expect = 1.6
Identities = 16/51 (31%), Positives = 25/51 (48%), Gaps = 2/51 (3%)
Frame = +2
Query: 54 MWKTSSKSPSMATHHHHAMKKTALHSSRTGLPFKEKKEIS--VSARKLAAT 102
+W+ S + HHHH + A SSR KE+K + + RK++ T
Sbjct: 713 LWRLDQISLKKSHHHHHHQFQAAASSSRLV*REKERKRVKGRTTMRKVSLT 865
>TC216950
Length = 873
Score = 28.5 bits (62), Expect = 2.1
Identities = 19/71 (26%), Positives = 35/71 (48%)
Frame = +2
Query: 77 LHSSRTGLPFKEKKEISVSARKLAATLWEINDLTPSRIKKESMKSNKERDKVERLCRSVL 136
L +R + +++E R+ E+ ++ R K+E+M+ K ++ ERL + L
Sbjct: 461 LEENRRKVEEAQRREALEQQRREEERYKELEEM--QRQKEEAMRKKKHEEEQERLNQIKL 634
Query: 137 LGPQKLDPLVS 147
LG K P +S
Sbjct: 635 LGKNKSRPKLS 667
>TC209944 weakly similar to UP|Q9NP08 (Q9NP08) H6 homeodomain protein,
partial (5%)
Length = 589
Score = 28.5 bits (62), Expect = 2.1
Identities = 20/102 (19%), Positives = 45/102 (43%), Gaps = 5/102 (4%)
Frame = -2
Query: 33 RYRFKRAILMGKKSGYNTPAPMWKTSSKSPSMATHHHHAMKKTALHSSRTGLPFKEKKEI 92
R R R + + G + WK + K+P + ++TA SSR + KE++ +
Sbjct: 354 RRRHSRTVRGHRTEGKRSTTERWKATEKTPEL------K*EETA-ESSRRRMKVKEQRRV 196
Query: 93 SVSARKLAATLWEI-----NDLTPSRIKKESMKSNKERDKVE 129
+K + + + TP ++++ +++ ++VE
Sbjct: 195 ETWTKKAREWRFSVEQQRTQETTPEIVRRQRRRTSPRAEEVE 70
>TC215732 similar to UP|Q9LSN7 (Q9LSN7) Gb|AAC24081.1 (AT3g17100/K14A17_22_),
partial (44%)
Length = 1112
Score = 28.5 bits (62), Expect = 2.1
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 3/145 (2%)
Frame = +3
Query: 24 TSSSSPFSRRYRFKRAILMGKKSGYNTPAPMWKTSSKSPSMATHHHHAMKKTAL--HSSR 81
T+ S S R + K+ L + + WK+ ++ ++ HHA+ + + + R
Sbjct: 339 TADRSRDSHRTKKKKKSLKQHQLQHEQSHAKWKSHAQQQLYSSKLHHALARVNISGDAPR 518
Query: 82 TGLPFKEKKEISVSARKLAATLWEINDLTPSRIKKESMKSNKERDKVERLCRSVLLGPQK 141
G +E + ++ T W LT +R+K + K +R K V++GP +
Sbjct: 519 RGRAVREAADRVLAVAAKGRTRWSRAILT-NRLKLKFRKPIHKRQK-------VVVGPGR 674
Query: 142 LDPLVSPFSE-RTKGIEVDGCKRNV 165
P + FS R KG + +R V
Sbjct: 675 --PKKARFSVLRLKGKTLPAVQRKV 743
>BM499229 similar to GP|22652121|gb BEL1-related homeotic protein 14 {Solanum
tuberosum}, partial (30%)
Length = 549
Score = 28.1 bits (61), Expect = 2.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 54 MWKTSSKSPSMATHHHHAMKKTALHS 79
+WK + SP M HH H +K+ L S
Sbjct: 173 LWKATLGSPRMCFHHAHLLKRPLLLS 250
>CD395254 similar to GP|17979464|gb| At1g68530/T26J14_10 {Arabidopsis
thaliana}, partial (9%)
Length = 670
Score = 27.7 bits (60), Expect = 3.6
Identities = 22/58 (37%), Positives = 31/58 (52%), Gaps = 2/58 (3%)
Frame = -2
Query: 7 KHLKQKHNKIRKRGCSSTSSSSPFSRRYRFKRAILMGKKSGYNTPAPMWK--TSSKSP 62
K K+K K +K+ + TSS SP S R R + I G SG+ + +WK S K+P
Sbjct: 405 KKKKKKKKKKKKKKKTQTSSLSP-SCRIRHEGQIAFG--SGFKCNSAVWKCNRSIKTP 241
>TC231372 similar to GB|AAH57771.1|34785931|BC057771 MGC40405 protein {Homo
sapiens;} , partial (7%)
Length = 1204
Score = 27.3 bits (59), Expect = 4.8
Identities = 29/127 (22%), Positives = 54/127 (41%), Gaps = 13/127 (10%)
Frame = +2
Query: 59 SKSPSMATHHHHAMKKTALHSSRTGLPFKEKKEISVSARKLAATLWEINDLTPSRIKKES 118
S PS + + +TA S G K+++ + + L ++ + N++ P+ KK++
Sbjct: 449 STHPSQDLQMNEPVSQTASDESSKG---KQRQLLDI----LNSSKTKENEVVPNSSKKKN 607
Query: 119 M----KSNKERDKVERLCRSV---------LLGPQKLDPLVSPFSERTKGIEVDGCKRNV 165
S K+ V ++ R+ + K L S F++ KGI G K +
Sbjct: 608 EVVPNSSKKQNAVVSQVVRTFGGTHSSSYDIRSKMKTTVLQSTFADDKKGINSVGAKIDT 787
Query: 166 SDLSHQF 172
L H+F
Sbjct: 788 KTLGHKF 808
>CD401364 weakly similar to GP|13774348|gb histidine-containing
phosphotransfer protein {Catharanthus roseus}, partial
(74%)
Length = 608
Score = 27.3 bits (59), Expect = 4.8
Identities = 9/39 (23%), Positives = 21/39 (53%)
Frame = -1
Query: 137 LGPQKLDPLVSPFSERTKGIEVDGCKRNVSDLSHQFHFV 175
+G Q++ + F + + V+GC +N+ + H++ V
Sbjct: 446 IGAQRIHRVCISFRNTCEELNVEGCLKNLQQVKHEYSLV 330
>TC234087 homologue to UP|Q6T2Z8 (Q6T2Z8) Cyclin-dependent kinases CDKB,
partial (61%)
Length = 869
Score = 27.3 bits (59), Expect = 4.8
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 37 KRAILMGKKSGYNTPAPMWKTSSKSPSMATHHHHAMKKTALHSSRTGLPFKEKKEISV 94
K A +K G T +++ K AT A+KKT LH + G+P +E+S+
Sbjct: 69 KEAFEKLEKVGEGTYGKVYRAREK----ATGKIVALKKTRLHEDQEGVPPTTLREVSI 230
>TC229289 similar to GB|AAL47398.1|17978853|AY066031 AT4g38060/F20D10_180
{Arabidopsis thaliana;} , partial (29%)
Length = 853
Score = 27.3 bits (59), Expect = 4.8
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = -3
Query: 26 SSSPFSRRYRFKRAILMGKKSGYNTPAPMWKT-SSKSPSMATHHHHAMKKTALHS 79
S P + Y G +S + P WK S + S+ +HHH M+ T H+
Sbjct: 614 SKEPAQQNYYPNHHHSEGNQS-HEAPTTQWKNLSHQIQSLTNNHHHQMEPTQHHT 453
>CF922367
Length = 463
Score = 27.3 bits (59), Expect = 4.8
Identities = 19/58 (32%), Positives = 24/58 (40%)
Frame = -1
Query: 85 PFKEKKEISVSARKLAATLWEINDLTPSRIKKESMKSNKERDKVERLCRSVLLGPQKL 142
P KE ++ RK WE KKE K+R K E +CR V GP +
Sbjct: 187 PIKEWEKAKGKERKFPIKEWEKEKKKGE--KKERKLLIKDRKKTEEMCREV-FGPDNI 23
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.316 0.128 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,308,795
Number of Sequences: 63676
Number of extensions: 148809
Number of successful extensions: 1413
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of query: 199
length of database: 12,639,632
effective HSP length: 92
effective length of query: 107
effective length of database: 6,781,440
effective search space: 725614080
effective search space used: 725614080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Medicago: description of AC146332.8