BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146331.9 + phase: 0
(75 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC232032 weakly similar to UP|Q6K376 (Q6K376) ABC transporter-li... 72 5e-14
CD400122 70 3e-13
TC218418 homologue to UP|Q6X4V5 (Q6X4V5) ABC transporter, partia... 69 6e-13
TC229551 weakly similar to UP|Q6X4V5 (Q6X4V5) ABC transporter, p... 65 5e-12
BI701600 53 3e-08
BE803620 homologue to GP|13605839|gb| At2g01320/F10A8.20 {Arabid... 52 4e-08
BG509363 similar to GP|14331118|e ABC1 protein {Nicotiana plumba... 42 4e-05
TC214401 weakly similar to UP|Q949G3 (Q949G3) ABC1 protein, part... 40 2e-04
TC217803 similar to UP|Q9AT00 (Q9AT00) At1g65410/T8F5_19, partia... 40 2e-04
BM892277 40 3e-04
CK606293 39 5e-04
AW471726 similar to PIR|T45888|T45 ABC transporter-like protein ... 38 0.001
TC233514 similar to UP|Q8LPQ6 (Q8LPQ6) At4g25450/M7J2_180, parti... 37 0.001
TC219347 similar to UP|Q9LF78 (Q9LF78) Mitochondrial half-ABC tr... 35 0.005
TC227035 similar to UP|Q9M1H3 (Q9M1H3) ABC transporter-like prot... 35 0.007
TC206794 weakly similar to UP|Q6UAB9 (Q6UAB9) SufC, partial (75%) 34 0.012
TC205958 similar to UP|Q93YY0 (Q93YY0) 68 kDa protein HP68, part... 34 0.012
BI973264 similar to GP|19335722|gb transporter associated with a... 33 0.021
TC215951 similar to UP|Q9SXT3 (Q9SXT3) Multidrug resistance prot... 33 0.021
TC225919 similar to GB|AAP37722.1|30725400|BT008363 At5g60790 {A... 33 0.027
>TC232032 weakly similar to UP|Q6K376 (Q6K376) ABC transporter-like protein,
partial (11%)
Length = 799
Score = 72.0 bits (175), Expect = 5e-14
Identities = 35/56 (62%), Positives = 45/56 (79%)
Frame = +2
Query: 9 LAWEDVRVMLPNFGKGPTKRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGSL 64
L+W+DVRV + GK +K +L GL G+A+PG+++AIMGPSG GKSTLLDTLAG L
Sbjct: 563 LSWKDVRVTA-SVGKNGSKSILEGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGRL 727
>CD400122
Length = 585
Score = 69.7 bits (169), Expect = 3e-13
Identities = 34/56 (60%), Positives = 43/56 (76%)
Frame = -1
Query: 9 LAWEDVRVMLPNFGKGPTKRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGSL 64
L WED+ V + N GK K +L GL G+A+PG+++AIMGPSG GKSTLLD LAG+L
Sbjct: 291 LTWEDLWVTVSN-GKNGRKPILQGLKGYAKPGKLLAIMGPSGCGKSTLLDALAGNL 127
>TC218418 homologue to UP|Q6X4V5 (Q6X4V5) ABC transporter, partial (49%)
Length = 1220
Score = 68.6 bits (166), Expect = 6e-13
Identities = 33/63 (52%), Positives = 43/63 (67%)
Frame = +1
Query: 9 LAWEDVRVMLPNFGKGPTKRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGSLKVTS 68
L W+D+ VM+ G T+ +L GL G+AEPG A+MGPSGSGKSTLLD L+ L +
Sbjct: 241 LTWKDLTVMV-TLSNGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANA 417
Query: 69 FLN 71
FL+
Sbjct: 418 FLS 426
>TC229551 weakly similar to UP|Q6X4V5 (Q6X4V5) ABC transporter, partial
(34%)
Length = 1436
Score = 65.5 bits (158), Expect = 5e-12
Identities = 33/58 (56%), Positives = 44/58 (74%)
Frame = +3
Query: 7 MVLAWEDVRVMLPNFGKGPTKRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGSL 64
+ L WE++ + N GK K +L+GL G+A+PGR++AI+GPSGSGKSTLLD LAG L
Sbjct: 15 ITLTWENLEATVTN-GKN-RKLILHGLTGYAQPGRLLAIIGPSGSGKSTLLDALAGRL 182
>BI701600
Length = 426
Score = 53.1 bits (126), Expect = 3e-08
Identities = 24/43 (55%), Positives = 31/43 (71%)
Frame = +3
Query: 22 GKGPTKRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGSL 64
G + +L G+ G A+PG I+A++GPSGSGKSTLL LAG L
Sbjct: 51 GAPKERTILKGVTGIAQPGEILAVLGPSGSGKSTLLHALAGRL 179
>BE803620 homologue to GP|13605839|gb| At2g01320/F10A8.20 {Arabidopsis
thaliana}, partial (8%)
Length = 413
Score = 52.4 bits (124), Expect = 4e-08
Identities = 24/36 (66%), Positives = 31/36 (85%)
Frame = +3
Query: 29 LLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGSL 64
LL ++G A+PGR++AIMGPSGSGK+TLL+ LAG L
Sbjct: 294 LLKNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQL 401
>BG509363 similar to GP|14331118|e ABC1 protein {Nicotiana plumbaginifolia},
partial (8%)
Length = 455
Score = 42.4 bits (98), Expect = 4e-05
Identities = 19/34 (55%), Positives = 26/34 (75%)
Frame = +1
Query: 29 LLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAG 62
LL G++G PG + A+MG SG+GK+TL+D LAG
Sbjct: 331 LLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 432
>TC214401 weakly similar to UP|Q949G3 (Q949G3) ABC1 protein, partial (18%)
Length = 1177
Score = 40.4 bits (93), Expect = 2e-04
Identities = 18/37 (48%), Positives = 26/37 (69%)
Frame = +1
Query: 28 RLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGSL 64
R+L ++G +P R+ ++GP GSGK+TLL LAG L
Sbjct: 760 RILQNVSGIIKPRRMTLLLGPPGSGKTTLLLALAGKL 870
>TC217803 similar to UP|Q9AT00 (Q9AT00) At1g65410/T8F5_19, partial (81%)
Length = 1563
Score = 40.4 bits (93), Expect = 2e-04
Identities = 21/52 (40%), Positives = 35/52 (66%)
Frame = +3
Query: 13 DVRVMLPNFGKGPTKRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGSL 64
+ R + +FG+ K++LNG++ + G + I+GPSG+GKST+L +AG L
Sbjct: 345 ECRDVYKSFGE---KKILNGVSFKIKHGEAVGIIGPSGTGKSTVLKIIAGLL 491
>BM892277
Length = 421
Score = 39.7 bits (91), Expect = 3e-04
Identities = 18/36 (50%), Positives = 28/36 (77%)
Frame = +2
Query: 27 KRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAG 62
+ +L ++ A+P I+AI+GPSG+GKS+LL+ LAG
Sbjct: 230 RHVLKNVSFQAKPWEILAIVGPSGAGKSSLLEILAG 337
>CK606293
Length = 782
Score = 38.9 bits (89), Expect = 5e-04
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = -3
Query: 29 LLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGSL 64
+L ++G +PGR+ ++GP SGK+TLL LAG L
Sbjct: 168 ILEDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGKL 61
>AW471726 similar to PIR|T45888|T45 ABC transporter-like protein -
Arabidopsis thaliana, partial (6%)
Length = 425
Score = 37.7 bits (86), Expect = 0.001
Identities = 17/35 (48%), Positives = 25/35 (70%)
Frame = +3
Query: 28 RLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAG 62
+LL + G PG + A+MG SG+GK+TL+D L+G
Sbjct: 249 QLLCDITGAFRPGILTALMGVSGAGKTTLMDVLSG 353
>TC233514 similar to UP|Q8LPQ6 (Q8LPQ6) At4g25450/M7J2_180, partial (20%)
Length = 505
Score = 37.4 bits (85), Expect = 0.001
Identities = 26/69 (37%), Positives = 36/69 (51%), Gaps = 6/69 (8%)
Frame = +3
Query: 6 LMVLAW------EDVRVMLPNFGKGPTKRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDT 59
L LAW EDV P P +L GLN + G + A++GPSG+GKST++
Sbjct: 108 LFSLAWSGDICLEDVYFSYP---LRPDVEILRGLNLRLKFGTVTALVGPSGAGKSTVVQL 278
Query: 60 LAGSLKVTS 68
L+ + TS
Sbjct: 279 LSHFYEPTS 305
>TC219347 similar to UP|Q9LF78 (Q9LF78) Mitochondrial half-ABC transporter,
partial (36%)
Length = 1085
Score = 35.4 bits (80), Expect = 0.005
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 7/47 (14%)
Frame = +1
Query: 27 KRLLNGLNGFAEPGRIMAIMGPSGSGKSTLL-------DTLAGSLKV 66
+++L+G++ G+ +AI+G SGSGKST+L D +GS+K+
Sbjct: 91 RKILDGISFVVPAGKSVAIVGTSGSGKSTILRLLFRFFDPHSGSIKI 231
>TC227035 similar to UP|Q9M1H3 (Q9M1H3) ABC transporter-like protein
(At3g54540), partial (56%)
Length = 1561
Score = 35.0 bits (79), Expect = 0.007
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +2
Query: 40 GRIMAIMGPSGSGKSTLLDTLAGSL 64
G +AI+GP+G+GKSTLL+ LAG L
Sbjct: 626 GTRVAIVGPNGAGKSTLLNLLAGDL 700
>TC206794 weakly similar to UP|Q6UAB9 (Q6UAB9) SufC, partial (75%)
Length = 1316
Score = 34.3 bits (77), Expect = 0.012
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 29 LLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAG 62
+L+G+N G + AIMG +GSGKST L G
Sbjct: 224 ILHGVNLTVNQGEVHAIMGKNGSGKSTFAKVLVG 325
>TC205958 similar to UP|Q93YY0 (Q93YY0) 68 kDa protein HP68, partial (22%)
Length = 623
Score = 34.3 bits (77), Expect = 0.012
Identities = 14/27 (51%), Positives = 20/27 (73%)
Frame = +1
Query: 39 PGRIMAIMGPSGSGKSTLLDTLAGSLK 65
PG+++ ++G +G GKST L LAG LK
Sbjct: 433 PGQVLGLVGTNGIGKSTALKVLAGKLK 513
>BI973264 similar to GP|19335722|gb transporter associated with antigen
processing-like protein {Arabidopsis thaliana}, partial
(14%)
Length = 346
Score = 33.5 bits (75), Expect = 0.021
Identities = 15/28 (53%), Positives = 21/28 (74%)
Frame = +2
Query: 33 LNGFAEPGRIMAIMGPSGSGKSTLLDTL 60
+N PG ++AI+G SGSGKSTL++ L
Sbjct: 257 VNFVVHPGEVVAIVGLSGSGKSTLVNLL 340
>TC215951 similar to UP|Q9SXT3 (Q9SXT3) Multidrug resistance protein
(Fragment), partial (84%)
Length = 1226
Score = 33.5 bits (75), Expect = 0.021
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2
Query: 29 LLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTL 60
+L G+N G I+ ++GPSGSGKST L L
Sbjct: 281 ILKGINLEIPEGVIVGVIGPSGSGKSTFLRAL 376
>TC225919 similar to GB|AAP37722.1|30725400|BT008363 At5g60790 {Arabidopsis
thaliana;} , partial (72%)
Length = 1562
Score = 33.1 bits (74), Expect = 0.027
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 21 FGKGPTKRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGSLK 65
FG P + L+ + +A++GP+G+GKSTLL + G L+
Sbjct: 657 FGYTPDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLE 791
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.140 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,480,442
Number of Sequences: 63676
Number of extensions: 22337
Number of successful extensions: 205
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of query: 75
length of database: 12,639,632
effective HSP length: 51
effective length of query: 24
effective length of database: 9,392,156
effective search space: 225411744
effective search space used: 225411744
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)
Medicago: description of AC146331.9