TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146331.8 + phase: 2 /pseudo
         (279 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC214948 weakly similar to UP|Q9ZVV1 (Q9ZVV1) T5A14.4 protein, p...   393  e-110
TC214946 homologue to UP|Q6TEC7 (Q6TEC7) Defender against progra...   210  5e-55
BQ273369                                                              145  2e-35
BE022062 similar to GP|20453070|gb| AT5g66920/MUD21_18 {Arabidop...   125  3e-29
TC214953                                                               35  0.029
AW156286                                                               35  0.038
TC228902 similar to UP|Q9XHD3 (Q9XHD3) PHAP2B protein, partial (...    29  2.1
TC215319 similar to UP|Q6Z1N4 (Q6Z1N4) Type 1 membrane protein-l...    28  3.5

>TC214948 weakly similar to UP|Q9ZVV1 (Q9ZVV1) T5A14.4 protein, partial (58%)
          Length = 1024

 Score =  393 bits (1009), Expect = e-110
 Identities = 210/254 (82%), Positives = 220/254 (85%), Gaps = 1/254 (0%)
 Frame = +1

Query: 2   SENGLKESVNYQVISLKDLAKSVLSEAGWSNFLCKGKKFQDPLDLALLFVGGELQSSDLS 61
           SENGLKESVNYQVIS KDLAKSV SEAGWSNFLCKGKK  +PLDLALLFVG ELQSSDL+
Sbjct: 265 SENGLKESVNYQVISPKDLAKSVFSEAGWSNFLCKGKKLHEPLDLALLFVGRELQSSDLN 444

Query: 62  LNKHADSALSYLLKDSFVRSNTSMAFPYVSASEDVNLEDSLVSGFAEACGDDLGIGNVAF 121
           +NKHA+SAL  LLK SF RSNTS+AFPYVS SEDV LE+SLVSGFAEACG D+GIGNVAF
Sbjct: 445 MNKHANSALLDLLKISFARSNTSVAFPYVSTSEDVLLENSLVSGFAEACG-DMGIGNVAF 621

Query: 122 LGSCSMGNGNREETAALQSVQAYLTKRKEESHKGKTDLVVFCN-GPQASKNVDSTKSEGE 180
            GSCSM   N EE   L SVQ YL KR EESH+GKTDLVVFCN G QA KNVD T+SEGE
Sbjct: 622 HGSCSMDGANHEEITTLHSVQDYLIKRMEESHRGKTDLVVFCNEGSQAVKNVDKTQSEGE 801

Query: 181 VLSELISSVEESGAKYAVLYVSDISRSIQYPSYRDLQRFLAESTTGNGSTNSTACDGVCQ 240
           VLS LISSVEESGAKYAVLYVSD SRSIQYPSYRDLQRFLAEST GN STNST CD VCQ
Sbjct: 802 VLSNLISSVEESGAKYAVLYVSDPSRSIQYPSYRDLQRFLAESTAGNESTNSTICDEVCQ 981

Query: 241 LKSSLLEGLLVGIV 254
           LKSSLLEG+LVGIV
Sbjct: 982 LKSSLLEGILVGIV 1023


>TC214946 homologue to UP|Q6TEC7 (Q6TEC7) Defender against programmed cell
           death, partial (12%)
          Length = 1085

 Score =  210 bits (535), Expect = 5e-55
 Identities = 110/133 (82%), Positives = 117/133 (87%), Gaps = 1/133 (0%)
 Frame = +3

Query: 148 RKEESHKGKTDLVVFCN-GPQASKNVDSTKSEGEVLSELISSVEESGAKYAVLYVSDISR 206
           R  ES +GKTD VVF N G QA +NVD T+SEGEVLS LI+SVEESGAKYA+LYVSD SR
Sbjct: 3   RXXESXRGKTDXVVFXNEGSQALENVDRTQSEGEVLSNLINSVEESGAKYAILYVSDPSR 182

Query: 207 SIQYPSYRDLQRFLAESTTGNGSTNSTACDGVCQLKSSLLEGLLVGIVLLIILISGLCCM 266
           SIQYPSYRDLQRFLAEST GN STNST CD VCQLKSSLLEG+LVGIVLLIILISGLCCM
Sbjct: 183 SIQYPSYRDLQRFLAESTAGNESTNSTICDEVCQLKSSLLEGILVGIVLLIILISGLCCM 362

Query: 267 MGIDSPTRFEAPQ 279
           MGID+PTRFE PQ
Sbjct: 363 MGIDTPTRFETPQ 401


>BQ273369 
          Length = 421

 Score =  145 bits (366), Expect = 2e-35
 Identities = 84/139 (60%), Positives = 91/139 (65%), Gaps = 40/139 (28%)
 Frame = +1

Query: 14  VISLKDLAKSVLSEAGWSNFLCKGKKFQDPLDLALLFVGGELQSSDLSLNKHADSALSYL 73
           VIS KDLAKS+LSEAGWSNFLCKGKKF +PLDLALLFVG ELQSSDLS+NKHA+SAL  L
Sbjct: 1   VISPKDLAKSILSEAGWSNFLCKGKKFHEPLDLALLFVGRELQSSDLSMNKHANSALLDL 180

Query: 74  LK----------------------------------------DSFVRSNTSMAFPYVSAS 93
           LK                                        +SF RSNTS+AFPYVS S
Sbjct: 181 LKVSKL*HAVCQLSMSSNPDLRFHKELCFFFFTVILFHCHEQNSFARSNTSVAFPYVSTS 360

Query: 94  EDVNLEDSLVSGFAEACGD 112
           EDV LE+SLVSGFAEACGD
Sbjct: 361 EDVLLENSLVSGFAEACGD 417


>BE022062 similar to GP|20453070|gb| AT5g66920/MUD21_18 {Arabidopsis
           thaliana}, partial (7%)
          Length = 355

 Score =  125 bits (313), Expect = 3e-29
 Identities = 62/83 (74%), Positives = 70/83 (83%)
 Frame = +3

Query: 197 AVLYVSDISRSIQYPSYRDLQRFLAESTTGNGSTNSTACDGVCQLKSSLLEGLLVGIVLL 256
           A+ + + +S+S+    Y DLQRFLAEST GN STNST CD VCQLKSSLLEG+LVGIVLL
Sbjct: 102 AISWATVLSQSVGCTYYTDLQRFLAESTAGNESTNSTICDEVCQLKSSLLEGILVGIVLL 281

Query: 257 IILISGLCCMMGIDSPTRFEAPQ 279
           IILISGLCCMMGID+PTRFE PQ
Sbjct: 282 IILISGLCCMMGIDTPTRFETPQ 350


>TC214953 
          Length = 992

 Score = 35.4 bits (80), Expect = 0.029
 Identities = 17/23 (73%), Positives = 19/23 (81%)
 Frame = +1

Query: 229 STNSTACDGVCQLKSSLLEGLLV 251
           STN T  D VC+LKSSLLEG+LV
Sbjct: 4   STNFTISDEVCKLKSSLLEGILV 72


>AW156286 
          Length = 380

 Score = 35.0 bits (79), Expect = 0.038
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = +3

Query: 229 STNSTACDGVCQLKSSLLEGLLVGIVLLIILISGLCCMMGIDSPTRFEAP 278
           S+NS  CD  C L+  +  G+  G+  L+I  +GL  M GI +PT +  P
Sbjct: 9   SSNSAICDV*CHLQ*DVGMGMPGGVDWLLIYTAGLSWMTGIATPTIYVTP 158


>TC228902 similar to UP|Q9XHD3 (Q9XHD3) PHAP2B protein, partial (36%)
          Length = 1242

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 23/79 (29%), Positives = 38/79 (47%)
 Frame = +2

Query: 151 ESHKGKTDLVVFCNGPQASKNVDSTKSEGEVLSELISSVEESGAKYAVLYVSDISRSIQY 210
           E+ +      + CNG +A  N + +  EGEV+S+  S  E++          D++  +  
Sbjct: 320 EAARAYDKAAIKCNGREAVTNFEPSFYEGEVISQ--SDNEDNKQSL------DLNLGLAP 475

Query: 211 PSYRDLQRFLAESTTGNGS 229
           PSY D Q    ++T  NGS
Sbjct: 476 PSYSDGQ---IKNTPSNGS 523


>TC215319 similar to UP|Q6Z1N4 (Q6Z1N4) Type 1 membrane protein-like, partial
           (12%)
          Length = 665

 Score = 28.5 bits (62), Expect = 3.5
 Identities = 24/120 (20%), Positives = 51/120 (42%)
 Frame = +3

Query: 150 EESHKGKTDLVVFCNGPQASKNVDSTKSEGEVLSELISSVEESGAKYAVLYVSDISRSIQ 209
           +E++KG+   +++C+                     +++ +ESG K+ V++         
Sbjct: 33  QEAYKGQIXXIIYCH---------------------VATTQESGKKFDVIFTP------- 128

Query: 210 YPSYRDLQRFLAESTTGNGSTNSTACDGVCQLKSSLLEGLLVGIVLLIILISGLCCMMGI 269
              +    R+LAE+   N +        V  ++ +L    + GI+LLI    G+C +M +
Sbjct: 129 ---HHPYARWLAETNAVNATLPE-----VVLVRRTL--AWVTGIILLISTFMGICYLMNM 278


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.313    0.131    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,550,078
Number of Sequences: 63676
Number of extensions: 126588
Number of successful extensions: 484
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of query: 279
length of database: 12,639,632
effective HSP length: 96
effective length of query: 183
effective length of database: 6,526,736
effective search space: 1194392688
effective search space used: 1194392688
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)