Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145767.3 - phase: 0 
         (807 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC210669 similar to UP|Q9FFR9 (Q9FFR9) Na+/H+ antiporter-like pr...   118  1e-26
NP1129936 CHX3 [Glycine max]                                           91  3e-18
BI424128 similar to GP|10178015|db Na+/H+ antiporter-like protei...    67  2e-11
BI427183                                                               61  2e-09
BE610549                                                               58  2e-08
TC220173                                                               48  2e-05
TC227184 UP|Q6Q2Z9 (Q6Q2Z9) Phosphoenolpyruvate carboxylase  , p...    31  1.9
BM140037                                                               29  9.4

>TC210669 similar to UP|Q9FFR9 (Q9FFR9) Na+/H+ antiporter-like protein,
           partial (16%)
          Length = 952

 Score =  118 bits (295), Expect = 1e-26
 Identities = 83/219 (37%), Positives = 119/219 (53%), Gaps = 6/219 (2%)
 Frame = +3

Query: 576 GSPEISHNEHCEINENVLQHAPCSVGIFVDRGLG-----SLLKTKMRIITLFIGGPDDRE 630
           GS  I+ N+   +N+ VL+HAPCSVGIFVDRGLG     S      R+  LF GG DDRE
Sbjct: 15  GSLNITRNDXRWVNKRVLEHAPCSVGIFVDRGLGGTSHVSASNVSYRVTVLFFGGGDDRE 194

Query: 631 ALSIAWRMAGHSGTQLHVVRIHLLGKAAEE-KVLKKKISKSPHGMLSTVMDGVMQKELDE 689
           AL+   RMA H G +L V+R   +G+   E ++++  +  S          G      DE
Sbjct: 195 ALAYGARMAEHPGIRLLVIR--FVGEPMNEGEIVRVDVGDS---------TGTKLISQDE 341

Query: 690 EYIFSFRHKAVNNNDSIVYLEKEVHSDTGEEIPTLLNEIDKPGYDLYIVGQGSGKNKTIF 749
           E++  F+ K + N+DSI+Y EK V    G E   ++ E++    +L++VG          
Sbjct: 342 EFLDEFKAK-IANDDSIIYEEKVVKD--GAETVAIICELN--SCNLFLVGSRPASEVASA 506

Query: 750 LKLLEWCDHPELGVIGDILASTSFGTHSSVLIVQQYMVG 788
           +K  E    PELG +G +LAS  + T +SVL++QQY  G
Sbjct: 507 MKRSEC---PELGPVGGLLASQDYPTTASVLVMQQYQNG 614


>NP1129936 CHX3 [Glycine max]
          Length = 1125

 Score = 90.5 bits (223), Expect = 3e-18
 Identities = 74/260 (28%), Positives = 124/260 (47%), Gaps = 1/260 (0%)
 Frame = +1

Query: 398 SFMVMTLAIILMTVIVSPLINAIYKPKFRFMQSQLRTVQKLRFDMELRVVACVHNAKHAT 457
           ++ VM + I+++  IV   +  IY P  ++     R +  L+ D ELRVVAC+H   HA+
Sbjct: 313 TYGVMMINIMVIASIVKWSVKLIYDPSRKYAGYPKRNIASLKPDSELRVVACLHKTHHAS 492

Query: 458 NIIHVLEATNATRISPVHVSAVHLLELTRHGTAILVSQMADLNNIAGAETTNYGPKAEFE 517
            +   L+    T   P + S+ H                                K+  +
Sbjct: 493 AVKDCLDLCCPTTEDP-NCSSNH--------------------------------KSYSD 573

Query: 518 IITTAFKEFV-EQYNAVRFDTSSVVSSYTTIHEDIYNVAEEKRASLILLPFHKEYSTVGG 576
            I  AF  +  +   AV     + +S  + +HED+ ++A +K AS+I+LPFH  +S   G
Sbjct: 574 DIILAFDLYEHDNMGAVTAHVYTAISPPSLMHEDVCHLALDKVASIIILPFHLRWSG-DG 750

Query: 577 SPEISHNEHCEINENVLQHAPCSVGIFVDRGLGSLLKTKMRIITLFIGGPDDREALSIAW 636
           + E  +     +N  +L+ APCSVGI V R       + +++  +F+GG DDREAL +A 
Sbjct: 751 AIESDYKNARALNCKLLEIAPCSVGILVGRS-AIHCDSFIQVAMIFLGGNDDREALCLAK 927

Query: 637 RMAGHSGTQLHVVRIHLLGK 656
           R+      ++++V  HL+ K
Sbjct: 928 RVT--RNPRVNLVVYHLVPK 981


>BI424128 similar to GP|10178015|db Na+/H+ antiporter-like protein
           {Arabidopsis thaliana}, partial (16%)
          Length = 421

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 43/128 (33%), Positives = 68/128 (52%), Gaps = 1/128 (0%)
 Frame = +1

Query: 443 ELRVVACVHNAKHATNIIHVLEATNATRISP-VHVSAVHLLELTRHGTAILVSQMADLNN 501
           +LR++ C H A++  ++I+++EA+   R    + V A+HL E +   + IL+   A  N 
Sbjct: 25  QLRILTCFHGARNIPSMINLIEASRGIRKGDALCVYAMHLKEFSERSSTILMVHKARRN- 201

Query: 502 IAGAETTNYGPKAEFEIITTAFKEFVEQYNAVRFDTSSVVSSYTTIHEDIYNVAEEKRAS 561
             G    N G  A+   +  AF+ +  Q + V       +SS   IHEDI   AE K A+
Sbjct: 202 --GLPFWNKGHHADSNHVIVAFEAY-RQLSQVSIRPMIAISSMNNIHEDICATAERKGAA 372

Query: 562 LILLPFHK 569
           +I+LPFHK
Sbjct: 373 VIILPFHK 396


>BI427183 
          Length = 421

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 40/134 (29%), Positives = 72/134 (52%)
 Frame = +2

Query: 462 VLEATNATRISPVHVSAVHLLELTRHGTAILVSQMADLNNIAGAETTNYGPKAEFEIITT 521
           ++E+  + + S + +  +HL+ELT   ++I+++Q  D  N +G+    +      E +  
Sbjct: 2   LIESIRSIQKSSIKLFIMHLVELTERSSSIILAQNTD--NKSGSSHVEW-----LEQLYR 160

Query: 522 AFKEFVEQYNAVRFDTSSVVSSYTTIHEDIYNVAEEKRASLILLPFHKEYSTVGGSPEIS 581
           AF+    Q   V   + + +SS +T+H+DI +VA+EK  ++I+LPFHK +  V       
Sbjct: 161 AFQAH-SQLGQVSVQSKTTISSLSTMHDDICHVADEKMVTMIILPFHKRWKKV------- 316

Query: 582 HNEHCEINENVLQH 595
             E+ E N  V QH
Sbjct: 317 EMENEEENSEVSQH 358


>BE610549 
          Length = 385

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
 Frame = -2

Query: 272 ITDFLGTHPIVGAFVFGLILPHG-KFADMVMEMSDDFVTGILCPVYFSGFGFKLDLPVLW 330
           +T  +G H I G FVFGL +P G +FA+ +    +DFV+ +  P+YF+  G K D+  L 
Sbjct: 372 VTHMIGLHSIFGGFVFGLTIPKGGEFANRMTRRIEDFVSTLFLPLYFAASGLKTDVTKLR 193

Query: 331 NTPNSVLMMLIMVLLCIPKVLSSLIV 356
           +  +  L++L+     + K+L +  V
Sbjct: 192 SVVDWGLLLLVTSTASVGKILGTFAV 115


>TC220173 
          Length = 567

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 38/102 (37%), Positives = 59/102 (57%)
 Frame = +1

Query: 684 QKELDEEYIFSFRHKAVNNNDSIVYLEKEVHSDTGEEIPTLLNEIDKPGYDLYIVGQGSG 743
           +KELD+  +  F+ K     + +V   ++V S+  EE+  L    D   YDL IVG+G  
Sbjct: 127 EKELDDATMARFQRKW----NGMVECFEKVASNIMEEVLALGRSKD---YDLIIVGKGQF 285

Query: 744 KNKTIFLKLLEWCDHPELGVIGDILASTSFGTHSSVLIVQQY 785
            + ++   L++   H ELG IGDILAS++    SSVL++QQ+
Sbjct: 286 -SLSLVADLVDR-QHEELGPIGDILASSTHDVVSSVLVIQQH 405


>TC227184 UP|Q6Q2Z9 (Q6Q2Z9) Phosphoenolpyruvate carboxylase  , partial (63%)
          Length = 2132

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 9/123 (7%)
 Frame = +1

Query: 662 VLKKKISKSPHGMLSTVMDGVMQ-------KELDEEYIFSFRHKAVNNNDSIVYLEKEVH 714
           VL K   +   G  +  +D + Q        E DEE    F  + +     +V +  EVH
Sbjct: 427 VLMKLDLRQESGRHAEALDAITQYLDMGTYSEWDEEKKLDFLTRELKGKRPLVPVSIEVH 606

Query: 715 SDTGEEIPT--LLNEIDKPGYDLYIVGQGSGKNKTIFLKLLEWCDHPELGVIGDILASTS 772
            D  E + T  +  E+       Y++   S  +  + ++LL+      L  IG++  +  
Sbjct: 607 PDVKEVLDTFRIAAELGSDSLGAYVISMASNASDVLAVELLQ--KDARLAAIGELGKACP 780

Query: 773 FGT 775
            GT
Sbjct: 781 GGT 789


>BM140037 
          Length = 272

 Score = 28.9 bits (63), Expect = 9.4
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = -3

Query: 733 YDLYIVGQGSGKNKTIFLKLLEWCD-HPELGVIGDILASTSFGTHSSVLIVQ 783
           +DL IVG+   + +T  L  +++   + ELG IGD+  S+  G  SS+L++Q
Sbjct: 210 HDLVIVGKQ--QLETTMLTNIDFRHGNEELGPIGDLFVSSGNGITSSLLVIQ 61


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.325    0.140    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,562,304
Number of Sequences: 63676
Number of extensions: 506724
Number of successful extensions: 3307
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3300
length of query: 807
length of database: 12,639,632
effective HSP length: 105
effective length of query: 702
effective length of database: 5,953,652
effective search space: 4179463704
effective search space used: 4179463704
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)


Medicago: description of AC145767.3