BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145513.11 - phase: 0 /pseudo
(820 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF425842 67 3e-11
TC220322 60 5e-09
TC222000 weakly similar to PIR|H84710|H84710 Mutator-like transp... 41 0.002
TC224819 similar to GB|AAO39889.1|28372814|BT003661 At5g09570 {A... 39 0.009
TC210254 similar to GB|AAM26637.1|20855902|AY101516 AT3g06940/F1... 36 0.060
TC222333 weakly similar to UP|Q9FNT6 (Q9FNT6) Long chain acyl-Co... 36 0.079
AW831299 34 0.23
TC218526 similar to UP|Q76B91 (Q76B91) RadA-like protein, partia... 34 0.23
TC219288 similar to GB|AAS99672.1|46518381|BT012528 At5g56840 {A... 33 0.51
TC226201 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp... 32 0.87
BI701322 similar to GP|9988432|dbj| P0671B11.14 {Oryza sativa (j... 32 1.1
TC224037 weakly similar to UP|SIRK_ARATH (O64483) Senescence-ind... 32 1.1
BG882782 32 1.1
TC215069 similar to UP|O24300 (O24300) PtxA protein precursor, p... 32 1.1
BG507624 32 1.1
BQ473525 similar to GP|9988432|dbj| P0671B11.14 {Oryza sativa (j... 31 1.9
BE475587 weakly similar to GP|20516462|gb| Topoisomerase IA {The... 31 1.9
TC230109 homologue to UP|Q8LDR0 (Q8LDR0) Zinc finger protein OBP... 31 2.5
TC226200 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp... 31 2.5
TC224095 31 2.5
>BF425842
Length = 414
Score = 67.0 bits (162), Expect = 3e-11
Identities = 33/80 (41%), Positives = 48/80 (59%)
Frame = +3
Query: 171 DSDAGPVFERIYVCFYACKRAFATTCRPLIGLDGCFLKGRDGGHLLAAIGKDGNNQMLPI 230
D+ + R++ F C F C+PL+ +DG FL G+ LL AIG+DG+ P+
Sbjct: 3 DNPLRVILNRVF*AFNPCIEGFKY-CKPLVQVDGTFLTGKYNDTLLTAIGQDGSRDNFPL 179
Query: 231 AFAVVEAETKDSWD*FLELL 250
AFA+VE+ETK++W FL L
Sbjct: 180 AFAIVESETKEAWIWFLHYL 239
>TC220322
Length = 1264
Score = 59.7 bits (143), Expect = 5e-09
Identities = 31/86 (36%), Positives = 40/86 (46%)
Frame = +1
Query: 570 TYNNLILPSNGPKLWPQVDLPPILPPYVRRAPSRPKKQRKKGNDEKVKHSQSGAGSSSNS 629
TY + I P GP+ W Q +PPY R RPKK RK+ DE + +
Sbjct: 574 TYQHFIEPVQGPQYWAQTQYTHPVPPYKRVQRGRPKKNRKRSVDE-----------DNVT 720
Query: 630 KSVPKRNQHSLKCGRCGELGHNVRTC 655
KR CGRCG+ HN+R+C
Sbjct: 721 GHKLKRKLAEFTCGRCGQTNHNIRSC 798
>TC222000 weakly similar to PIR|H84710|H84710 Mutator-like transposase
[imported] - Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (12%)
Length = 617
Score = 41.2 bits (95), Expect = 0.002
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Frame = +2
Query: 562 YRKSTFLDTYNNLILPSNGPKLWPQV-------DLPPILPPYVRRAPSRPKKQRKKGNDE 614
+ ++F DTY I P G W + ++ + PP +RR P RP+K+ +
Sbjct: 143 FTAASFRDTYAETIHPIPGKLEWSKTGNSSMDDNILVVRPPKLRRPPGRPEKRMCVDD-- 316
Query: 615 KVKHSQSGAGSSSNSKSVPKRNQHSLKCGRCGELGHNVRTCYGKQL 660
R +H++ C RC + GH RTC + +
Sbjct: 317 ------------------LNREKHTVHCSRCNQTGHYKRTCKAEMI 400
>TC224819 similar to GB|AAO39889.1|28372814|BT003661 At5g09570 {Arabidopsis
thaliana;} , partial (60%)
Length = 751
Score = 38.9 bits (89), Expect = 0.009
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = +3
Query: 702 NCSATSSTTCTQEERAS*QERTKQKGWEIIWNHTHNCTNSFNH-NRSITWKHNCTTSCKH 760
+CS+ SS++C+ +S + W W H N ++ + +R + C S
Sbjct: 135 SCSSGSSSSCSSSPCSS-SSPCSEWWWIYAWWHWFNHSSRYGFWHRKCSGTQGCGCSHGS 311
Query: 761 HFTTT*HHCTTTCCNQHCATCKQQCANCKQH 791
+ +T*+ C CC C CK C QH
Sbjct: 312 SYHST*NSCYRGCCCCPCTHCKYFWWRCMQH 404
>TC210254 similar to GB|AAM26637.1|20855902|AY101516 AT3g06940/F17A9_9
{Arabidopsis thaliana;} , partial (6%)
Length = 814
Score = 36.2 bits (82), Expect = 0.060
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
Frame = +1
Query: 585 PQVDLPPI----------LPPYVRRAPSRPKKQRKKGNDEKVKHSQSGAGSSSNSKSVPK 634
P VD PP+ +PP +R P RPK ++ + D + K
Sbjct: 241 PNVDKPPVQGESTALVMVIPPPTKRPPGRPKMKQVESID------------------IIK 366
Query: 635 RNQHSLKCGRCGELGHNVRTC 655
R L+C +C LGHN +TC
Sbjct: 367 RQ---LQCSKCKGLGHNRKTC 420
>TC222333 weakly similar to UP|Q9FNT6 (Q9FNT6) Long chain acyl-CoA synthetase
, partial (14%)
Length = 375
Score = 35.8 bits (81), Expect = 0.079
Identities = 22/67 (32%), Positives = 29/67 (42%), Gaps = 12/67 (17%)
Frame = -2
Query: 706 TSSTTCTQEERAS*QERTKQKGWEI--------IWNHTHN-CTNSFN---HNRSITWKHN 753
T+ TTC+Q R + KG IWNH HN C + +N N W+
Sbjct: 374 TNCTTCSQHNRLCCHFKNMSKGQVCQVHILAT*IWNHCHNSCCSGYNVAVSNHDTLWQ-T 198
Query: 754 CTTSCKH 760
CT +C H
Sbjct: 197 CTATCVH 177
>AW831299
Length = 334
Score = 34.3 bits (77), Expect = 0.23
Identities = 14/31 (45%), Positives = 18/31 (57%)
Frame = +3
Query: 629 SKSVPKRNQHSLKCGRCGELGHNVRTCYGKQ 659
S S K N +S+ C CG GH + TCY K+
Sbjct: 30 STSTQKCNSNSITCFYCGRRGHGISTCYFKK 122
>TC218526 similar to UP|Q76B91 (Q76B91) RadA-like protein, partial (26%)
Length = 831
Score = 34.3 bits (77), Expect = 0.23
Identities = 24/90 (26%), Positives = 37/90 (40%), Gaps = 4/90 (4%)
Frame = -3
Query: 726 KGWEIIWNHTHNCTNSFNHNRSITWKHNCTT----SCKHHFTTT*HHCTTTCCNQHCATC 781
K + ++W +TH S+T H C S H +T + T C
Sbjct: 403 KFFSLLWYYTH----------SVTQLHQCVNPFFNSRNHAKLSTKANFTNECSPLWNWEL 254
Query: 782 KQQCANCKQHCATCKQLCANCEATNSGGKH 811
++ ANC +C LC +C +TN+ KH
Sbjct: 253 QETAANCSCYCKISSSLC-HCHSTNNIQKH 167
>TC219288 similar to GB|AAS99672.1|46518381|BT012528 At5g56840 {Arabidopsis
thaliana;} , partial (41%)
Length = 720
Score = 33.1 bits (74), Expect = 0.51
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 631 SVPKRNQHSLKCGRCGELGHNVRTC 655
S P + + KC CG +GHN RTC
Sbjct: 2 SQPLKGRMGRKCSHCGNIGHNSRTC 76
>TC226201 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp22 splicing
factor), partial (72%)
Length = 820
Score = 32.3 bits (72), Expect = 0.87
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +1
Query: 609 KKGNDEKVKHSQSGAGSSSNSKSVPKRNQHSLKCGRCGELGHNVRTC 655
+ G K+ H+ G G +S LKC CGE GH R C
Sbjct: 160 RMGGRVKLSHNSRGGGGGRGGRS----GGSDLKCYECGEPGHFAREC 288
>BI701322 similar to GP|9988432|dbj| P0671B11.14 {Oryza sativa (japonica
cultivar-group)}, partial (12%)
Length = 421
Score = 32.0 bits (71), Expect = 1.1
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 641 KCGRCGELGHNVRTCYGKQLGDRMLAPGENQVQ 673
KC CG LGHN RTC PG+ Q++
Sbjct: 67 KCSYCGNLGHNARTCKS--------TPGQGQLK 141
>TC224037 weakly similar to UP|SIRK_ARATH (O64483) Senescence-induced
receptor-like serine/threonine kinase precursor
(FLG22-induced receptor-like kinase 1) , partial (11%)
Length = 739
Score = 32.0 bits (71), Expect = 1.1
Identities = 15/47 (31%), Positives = 20/47 (41%)
Frame = +1
Query: 754 CTTSCKHHFTTT*HHCTTTCCNQHCATCKQQCANCKQHCATCKQLCA 800
C T C+H F+ + HC C H QQ + K C + CA
Sbjct: 184 CPTCCRHSFSCSLFHCIGYCTEYHLEKEMQQKTSIKASCEIK*RGCA 324
>BG882782
Length = 357
Score = 32.0 bits (71), Expect = 1.1
Identities = 12/53 (22%), Positives = 31/53 (57%), Gaps = 5/53 (9%)
Frame = -1
Query: 9 GQVFSSSELIRTSVREFALQQRKNIYVQKSERNRVVVKC-----DEGCPFYMR 56
G F S + ++ +++++ ++ ++ V +++ ++ +V C + CPFYMR
Sbjct: 210 GMDFDSKDAVKNALKQYVMKVHQSFKVVETKSHKYIVCCPNNTEESPCPFYMR 52
>TC215069 similar to UP|O24300 (O24300) PtxA protein precursor, partial (83%)
Length = 1405
Score = 32.0 bits (71), Expect = 1.1
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 8/116 (6%)
Frame = +1
Query: 698 PNQSNCSATSSTTCTQEERAS*QERTKQKGWEIIWNHTHNCTNSFNHNRSI----TWKHN 753
P ++C T T E + + T + I + T NC S + T +
Sbjct: 343 PKTTSC*TTLCPEATSCEPSLCPKTTSCASYTTICSKTTNCEPSLCPKTTCCPS*TTIYP 522
Query: 754 CTTSCKHHFT----TT*HHCTTTCCNQHCATCKQQCANCKQHCATCKQLCANCEAT 805
TTSC + T TT HC +TC T C C+ C + +C++T
Sbjct: 523 KTTSCASYTTLCAKTT--HCLSTCSTN---TTNCDTTYCVSTCSPCATITTHCDST 675
>BG507624
Length = 268
Score = 32.0 bits (71), Expect = 1.1
Identities = 14/49 (28%), Positives = 25/49 (50%)
Frame = +1
Query: 601 PSRPKKQRKKGNDEKVKHSQSGAGSSSNSKSVPKRNQHSLKCGRCGELG 649
P + + N +++ SG+ + N K P++ +H C +CGELG
Sbjct: 13 PQEHRHETSHQNSKEILDLLSGSSTHCNRKFTPEKKKHPW-CAKCGELG 156
>BQ473525 similar to GP|9988432|dbj| P0671B11.14 {Oryza sativa (japonica
cultivar-group)}, partial (9%)
Length = 427
Score = 31.2 bits (69), Expect = 1.9
Identities = 20/70 (28%), Positives = 31/70 (43%)
Frame = +1
Query: 641 KCGRCGELGHNVRTCYGKQLGDRMLAPGENQVQTVMCFTVMC*ICNCHMYLTCIMHIPNQ 700
KC CG GHN RTC + G ++ VQ +C + + +P
Sbjct: 196 KCSYCGNFGHNSRTCNTHKRGLKLFG-----VQLDLCSS------------SSSSSLPLT 324
Query: 701 SNCSATSSTT 710
S C+++SS+T
Sbjct: 325 SPCTSSSSST 354
>BE475587 weakly similar to GP|20516462|gb| Topoisomerase IA
{Thermoanaerobacter tengcongensis}, partial (7%)
Length = 424
Score = 31.2 bits (69), Expect = 1.9
Identities = 20/70 (28%), Positives = 31/70 (43%), Gaps = 5/70 (7%)
Frame = -2
Query: 738 CTNSFNHNRSITWKHNCTTSCKHHFTTT*HHCTTTCCNQ-HCATCKQQCAN----CKQHC 792
CT+ FN R+ T ++F ++ C Q HC T +Q + CK HC
Sbjct: 297 CTSPFNDQRAYT---------SNNFIRNMESISSDICYQTHCYTIRQFNSLVELLCKLHC 145
Query: 793 ATCKQLCANC 802
TC+++ C
Sbjct: 144 VTCREMQLVC 115
>TC230109 homologue to UP|Q8LDR0 (Q8LDR0) Zinc finger protein OBP4-like,
partial (27%)
Length = 696
Score = 30.8 bits (68), Expect = 2.5
Identities = 15/36 (41%), Positives = 20/36 (54%)
Frame = +2
Query: 621 SGAGSSSNSKSVPKRNQHSLKCGRCGELGHNVRTCY 656
SG+GS+ +NQ +LKC RC L N + CY
Sbjct: 173 SGSGSADRRLRPHHQNQQALKCPRCDSL--NTKFCY 274
>TC226200 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp22 splicing
factor), partial (89%)
Length = 936
Score = 30.8 bits (68), Expect = 2.5
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 609 KKGNDEKVKHSQSGAGSSSNSKSVPKRNQHSLKCGRCGELGHNVRTC 655
K G ++ H+ G G +S LKC CGE GH R C
Sbjct: 251 KNGWRVELSHNSRGGGGGRGGRS----GGSDLKCYECGEPGHFAREC 379
>TC224095
Length = 515
Score = 30.8 bits (68), Expect = 2.5
Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Frame = +1
Query: 753 NCTTSCK--HHFTTT*HHCTTTCCNQHCATC---KQQCANCKQHCATCKQLC-ANCEATN 806
N C+ H T +TCCN C K C CK C + C C TN
Sbjct: 13 NAADHCRKDHEICTLSGVKNSTCCNNKCIDVGYDKHNCGACKMKCKFTEVCCRGECVDTN 192
Query: 807 SGGKH 811
+H
Sbjct: 193 FDKRH 207
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.344 0.151 0.515
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,352,485
Number of Sequences: 63676
Number of extensions: 819907
Number of successful extensions: 10342
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 7526
Number of HSP's successfully gapped in prelim test: 372
Number of HSP's that attempted gapping in prelim test: 2245
Number of HSP's gapped (non-prelim): 8535
length of query: 820
length of database: 12,639,632
effective HSP length: 105
effective length of query: 715
effective length of database: 5,953,652
effective search space: 4256861180
effective search space used: 4256861180
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 63 (28.9 bits)
Medicago: description of AC145513.11