TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145512.4 + phase: 0 /pseudo
         (135 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza s...    33  0.041

>BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza sativa
           (japonica cultivar-group)}, partial (7%)
          Length = 426

 Score = 33.1 bits (74), Expect = 0.041
 Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 4/36 (11%)
 Frame = +2

Query: 81  ENSD-V*SEWF---TPEFLNGIKSSGIPNHRLKLKV 112
           E SD + SE F   T EF+N + +S +PNH++KLKV
Sbjct: 14  EKSDTIESEGFSTITTEFINSLSTSRLPNHKIKLKV 121


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.325    0.144    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,626,033
Number of Sequences: 63676
Number of extensions: 66314
Number of successful extensions: 279
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of query: 135
length of database: 12,639,632
effective HSP length: 87
effective length of query: 48
effective length of database: 7,099,820
effective search space: 340791360
effective search space used: 340791360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)