BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145470.4 + phase: 0
(457 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC218444 similar to GB|AAM53248.1|21427471|AF507916 actin-relate... 438 e-123
BE330751 272 2e-73
TC229653 similar to GB|AAM53248.1|21427471|AF507916 actin-relate... 239 2e-63
BM887043 233 2e-61
AI736087 homologue to GP|21427473|gb| actin-related protein 8A {... 143 2e-34
TC204137 homologue to UP|ACTB_ARATH (P53496) Actin 11, complete 126 2e-29
TC204144 homologue to UP|O81221 (O81221) Actin, complete 126 2e-29
TC204142 homologue to UP|Q9M4Y1 (Q9M4Y1) Actin-like protein, com... 125 3e-29
TC204827 UP|Q9SLQ6 (Q9SLQ6) Actin isoform B, complete 125 3e-29
TC204148 homologue to UP|O81221 (O81221) Actin, complete 124 9e-29
TC204824 homologue to UP|Q9SLQ6 (Q9SLQ6) Actin isoform B, complete 123 2e-28
TC204150 UP|Q9M729 (Q9M729) Actin, complete 122 3e-28
TC204149 homologue to UP|O81221 (O81221) Actin, partial (93%) 121 6e-28
TC204140 homologue to UP|ACTB_ARATH (P53496) Actin 11, partial (... 94 3e-23
BM107897 homologue to SP|P02578|ACT1 Actin 1. [Amoeba] {Acantham... 62 3e-21
TC207055 homologue to UP|Q9LSD6 (Q9LSD6) ARP2 (Actin-related pro... 84 1e-16
TC204143 UP|Q9M729 (Q9M729) Actin, partial (42%) 83 2e-16
TC204141 homologue to UP|Q7XZJ2 (Q7XZJ2) Actin, partial (34%) 73 3e-13
AI901246 SP|P10987|ACT Actin-5C. [Fruit fly] {Drosophila melanog... 68 8e-12
BQ612342 homologue to PIR|A29044|ATF actin - slime mold (Physaru... 65 5e-11
>TC218444 similar to GB|AAM53248.1|21427471|AF507916 actin-related protein 8B
{Arabidopsis thaliana;} , partial (60%)
Length = 1767
Score = 438 bits (1126), Expect = e-123
Identities = 217/262 (82%), Positives = 241/262 (91%), Gaps = 1/262 (0%)
Frame = +1
Query: 192 VKPSSQVVVVSLPLCHYDDTESAKASRQQLKEAICAALFDMNVPAVCALNQATLALYAAN 251
VKP+ Q V+VS+P+CHYDDTESAKASRQQLKEAI A+LFDMNVPAVCA+NQATLALYAA
Sbjct: 340 VKPNKQPVIVSVPICHYDDTESAKASRQQLKEAIYASLFDMNVPAVCAINQATLALYAAK 519
Query: 252 QTSGIAVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQQNNLYFESLYT 311
+TSGI VNIGFQVTS+VPILNGKVMRKVGVEVVGLGALKLTGFLREKMQ NNL F+SLYT
Sbjct: 520 RTSGIVVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQLNNLSFQSLYT 699
Query: 312 VRTLKEKLCYVAYDYEAELSKDTHASFEAA-EGKFTLSKERFQTGEILFQPRLAGVRAMS 370
VRTLKE LCYVA DYEAEL KDT ASFEAA EG FTLSK RFQT EILFQP LAGV+AM
Sbjct: 700 VRTLKENLCYVALDYEAELLKDTKASFEAAGEGWFTLSKGRFQTAEILFQPHLAGVQAMG 879
Query: 371 LHHAIALCMDHCHSAELAGGSDWFKTVVLSGGSACLPGLAERLEKELHSLLPPYMSNGIR 430
LH AIALC++HCHSA+LA SDW+KT+VLSGG+ACLPGLAER+EKELH+LLPPY+SNGIR
Sbjct: 880 LHQAIALCVEHCHSADLACDSDWYKTIVLSGGTACLPGLAERIEKELHALLPPYVSNGIR 1059
Query: 431 VIPPPHGADTAWFGAKLIGSVS 452
VIPPP+GADT WFGAK++G++S
Sbjct: 1060VIPPPYGADTPWFGAKIVGNLS 1125
>BE330751
Length = 462
Score = 272 bits (696), Expect = 2e-73
Identities = 136/154 (88%), Positives = 145/154 (93%)
Frame = +1
Query: 251 NQTSGIAVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQQNNLYFESLY 310
+QTSGIAVNIGFQVTS+VPILNGKVMRKVGVEVVGLGALKLTGFLRE+MQQNN+ FESLY
Sbjct: 1 SQTSGIAVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLREQMQQNNISFESLY 180
Query: 311 TVRTLKEKLCYVAYDYEAELSKDTHASFEAAEGKFTLSKERFQTGEILFQPRLAGVRAMS 370
TVRTLKEKLCYVA DYEAEL KDT ASFEA EG FTLSKERFQTGEILFQPRLAGVRAM
Sbjct: 181 TVRTLKEKLCYVAVDYEAELLKDTQASFEAVEGLFTLSKERFQTGEILFQPRLAGVRAMG 360
Query: 371 LHHAIALCMDHCHSAELAGGSDWFKTVVLSGGSA 404
LH AIALC+DHC+SAELAG +DW+KTVVLSGG+A
Sbjct: 361 LHQAIALCVDHCYSAELAGNNDWYKTVVLSGGTA 462
>TC229653 similar to GB|AAM53248.1|21427471|AF507916 actin-related protein 8B
{Arabidopsis thaliana;} , partial (35%)
Length = 789
Score = 239 bits (610), Expect = 2e-63
Identities = 118/147 (80%), Positives = 125/147 (84%)
Frame = +2
Query: 306 FESLYTVRTLKEKLCYVAYDYEAELSKDTHASFEAAEGKFTLSKERFQTGEILFQPRLAG 365
F SLYTVRT K VA D EL KDT ASFEA EG FTLSKERFQTGEILFQPRLAG
Sbjct: 8 F*SLYTVRTXXXKXXXVAVDXXXELXKDTQASFEAVEGLFTLSKERFQTGEILFQPRLAG 187
Query: 366 VRAMSLHHAIALCMDHCHSAELAGGSDWFKTVVLSGGSACLPGLAERLEKELHSLLPPYM 425
VRAM LH AIALC+DHC+SAELAG +DW+KTVVLSGG+ACLPGLAERLEKELHSLLPPYM
Sbjct: 188 VRAMGLHQAIALCVDHCYSAELAGNNDWYKTVVLSGGTACLPGLAERLEKELHSLLPPYM 367
Query: 426 SNGIRVIPPPHGADTAWFGAKLIGSVS 452
SNGIRVIPPP G DTAWFG K+I S+S
Sbjct: 368 SNGIRVIPPPFGVDTAWFGGKIISSLS 448
>BM887043
Length = 428
Score = 233 bits (593), Expect = 2e-61
Identities = 109/139 (78%), Positives = 123/139 (88%)
Frame = +1
Query: 118 QTTPHVSFKHVFGHREQLPPAIIIDGGSGYCKFGWSKEDRPLGRVATFLEFGNVETPIYT 177
Q +P VSF+H + RE++PP+++IDGGSGYCKFGWSK P GR ATFLEFGNVETP+YT
Sbjct: 10 QNSPRVSFQHAYALRERVPPSVVIDGGSGYCKFGWSKGASPSGRFATFLEFGNVETPMYT 189
Query: 178 RLRHFFATVYGRMKVKPSSQVVVVSLPLCHYDDTESAKASRQQLKEAICAALFDMNVPAV 237
RLRHFF+T+Y RM+VKPSSQ VVVS+P+CHYDDTESAKASRQQLKEAI LFDMNVPAV
Sbjct: 190 RLRHFFSTIYNRMQVKPSSQPVVVSIPICHYDDTESAKASRQQLKEAIYVVLFDMNVPAV 369
Query: 238 CALNQATLALYAANQTSGI 256
CALNQ TLALYAANQTSGI
Sbjct: 370 CALNQGTLALYAANQTSGI 426
>AI736087 homologue to GP|21427473|gb| actin-related protein 8A {Arabidopsis
thaliana}, partial (13%)
Length = 427
Score = 143 bits (360), Expect = 2e-34
Identities = 77/139 (55%), Positives = 93/139 (66%), Gaps = 1/139 (0%)
Frame = +1
Query: 17 STNTTNSSSSSRSHQHHHHHAPSPLGLFDSLPPDILLKITRLLGPKHAAKLCLVCKSWRS 76
S+ + S+SS S A S +G + LP DIL+ I RLLGPK AAKL +VCK+ R
Sbjct: 13 SSTSA*RSASSSSSSSPPEVACSDMGELELLPSDILMHILRLLGPKEAAKLSVVCKALRP 192
Query: 77 LVSDNELWAHFLQTHQ-PIHFHSILFSETNLTSGYPLPIFDTQTTPHVSFKHVFGHREQL 135
LVSDN LW HFLQTHQ S+ F+ET L+ GYPLP F P +SFKH++G R +
Sbjct: 193 LVSDNRLWIHFLQTHQADPSGDSVFFAETTLSYGYPLPPF-AGHWPQLSFKHIYGQRALV 369
Query: 136 PPAIIIDGGSGYCKFGWSK 154
P +IIIDGGSGYCKFGWSK
Sbjct: 370 PGSIIIDGGSGYCKFGWSK 426
>TC204137 homologue to UP|ACTB_ARATH (P53496) Actin 11, complete
Length = 1559
Score = 126 bits (316), Expect = 2e-29
Identities = 87/278 (31%), Positives = 141/278 (50%), Gaps = 10/278 (3%)
Frame = +1
Query: 185 TVYGRMKVKPSSQ-VVVVSLPLCHYDDTESAKASRQQLKEAICAALFDMNVPAVCALNQA 243
T Y ++V P V++ PL + KA+R+++ + + N PA+ QA
Sbjct: 379 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NTPAMYVAIQA 528
Query: 244 TLALYAANQTSGIAVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQQNN 303
L+LYA+ +T+GI ++ G V+ VPI G + + + L LT FL + + +
Sbjct: 529 VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDFLMKILTERG 705
Query: 304 LYFES---LYTVRTLKEKLCYVAYDYEAEL-----SKDTHASFEAAEGK-FTLSKERFQT 354
F + VR +KEKL Y+A DYE EL S S+E +G+ T+ ERF+
Sbjct: 706 YSFTTSAEREIVRDVKEKLSYIALDYEQELETARTSSSVEKSYELPDGQVITIGDERFRC 885
Query: 355 GEILFQPRLAGVRAMSLHHAIALCMDHCHSAELAGGSDWFKTVVLSGGSACLPGLAERLE 414
E+LFQP + G+ A +H + C ++ D + +VLSGG+ PG+A+R+
Sbjct: 886 PEVLFQPSMIGMEASGIHETTYNSIMKC---DVDIRKDLYGNIVLSGGTTMFPGIADRMS 1056
Query: 415 KELHSLLPPYMSNGIRVIPPPHGADTAWFGAKLIGSVS 452
KE+ +L P M I+V+ PP + W G ++ S+S
Sbjct: 1057KEISALAPSSMK--IKVVAPPERKYSVWIGGSILASLS 1164
>TC204144 homologue to UP|O81221 (O81221) Actin, complete
Length = 1355
Score = 126 bits (316), Expect = 2e-29
Identities = 86/278 (30%), Positives = 141/278 (49%), Gaps = 10/278 (3%)
Frame = +2
Query: 185 TVYGRMKVKPSSQ-VVVVSLPLCHYDDTESAKASRQQLKEAICAALFDMNVPAVCALNQA 243
T Y ++V P V++ PL + KA+R+++ + + N PA+ QA
Sbjct: 272 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NAPAMYVAIQA 421
Query: 244 TLALYAANQTSGIAVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQQNN 303
L+LYA+ +T+GI ++ G V+ VPI G + + + L LT FL + + +
Sbjct: 422 VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDFLMKILTERG 598
Query: 304 LYFES---LYTVRTLKEKLCYVAYDYEAEL-----SKDTHASFEAAEGK-FTLSKERFQT 354
F + VR +KEKL Y+A DYE EL S S+E +G+ T+ ERF+
Sbjct: 599 YSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRC 778
Query: 355 GEILFQPRLAGVRAMSLHHAIALCMDHCHSAELAGGSDWFKTVVLSGGSACLPGLAERLE 414
E+L+QP + G+ A +H + C ++ D + +VLSGG+ PG+A+R+
Sbjct: 779 PEVLYQPSMVGMEASGIHETTYNSIMKC---DVDIRKDLYGNIVLSGGTTMFPGIADRMS 949
Query: 415 KELHSLLPPYMSNGIRVIPPPHGADTAWFGAKLIGSVS 452
KE+ +L P M I+V+ PP + W G ++ S+S
Sbjct: 950 KEISALAPSSMK--IKVVAPPERKYSVWIGGSILASLS 1057
>TC204142 homologue to UP|Q9M4Y1 (Q9M4Y1) Actin-like protein, complete
Length = 1696
Score = 125 bits (315), Expect = 3e-29
Identities = 88/278 (31%), Positives = 142/278 (50%), Gaps = 10/278 (3%)
Frame = +2
Query: 185 TVYGRMKVKPSSQ-VVVVSLPLCHYDDTESAKASRQQLKEAICAALFDMNVPAVCALNQA 243
T Y ++V P V++ PL + KA+R+++ + + NVPA+ QA
Sbjct: 365 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NVPAMYVAIQA 514
Query: 244 TLALYAANQTSGIAVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQQNN 303
L+LYA+ +T+GI ++ G V+ VPI G + + + L LT +L + + +
Sbjct: 515 VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTEYLVKILTERG 691
Query: 304 LYFES---LYTVRTLKEKLCYVAYDYEAEL-----SKDTHASFEAAEGK-FTLSKERFQT 354
F + VR +KEKL YVA D+E E+ S S+E +G+ T+ ERF+
Sbjct: 692 YSFSTSAEKEIVRDVKEKLAYVALDFEQEMETTKSSSAVEKSYELPDGQVITIGSERFRC 871
Query: 355 GEILFQPRLAGVRAMSLHHAIALCMDHCHSAELAGGSDWFKTVVLSGGSACLPGLAERLE 414
E+LFQP L G+ A +H + C ++ D + +VLSGGS PG+A+R+
Sbjct: 872 PEVLFQPSLIGMEATGIHETTYNSIMKC---DVDIRKDLYGNIVLSGGSTMFPGIADRMS 1042
Query: 415 KELHSLLPPYMSNGIRVIPPPHGADTAWFGAKLIGSVS 452
KE+ +L P M I+V+ PP + W G ++ S+S
Sbjct: 1043KEISALAPSSMK--IKVVAPPERKYSVWIGGSILASLS 1150
>TC204827 UP|Q9SLQ6 (Q9SLQ6) Actin isoform B, complete
Length = 1733
Score = 125 bits (315), Expect = 3e-29
Identities = 88/278 (31%), Positives = 141/278 (50%), Gaps = 10/278 (3%)
Frame = +3
Query: 185 TVYGRMKVKPSSQ-VVVVSLPLCHYDDTESAKASRQQLKEAICAALFDMNVPAVCALNQA 243
T Y ++V P V++ PL + KA+R+++ + + NVPA+ QA
Sbjct: 483 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NVPAMYVAIQA 632
Query: 244 TLALYAANQTSGIAVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQQNN 303
L+LYA+ +T+GI ++ G V+ VPI G + + + L LT L + + +
Sbjct: 633 VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDSLMKILTERG 809
Query: 304 LYFES---LYTVRTLKEKLCYVAYDYEAEL-----SKDTHASFEAAEGK-FTLSKERFQT 354
F + VR +KEKL YVA DYE EL S ++E +G+ T+ ERF+
Sbjct: 810 YMFTTSAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQVITIGAERFRC 989
Query: 355 GEILFQPRLAGVRAMSLHHAIALCMDHCHSAELAGGSDWFKTVVLSGGSACLPGLAERLE 414
E+LFQP + G+ A +H + C ++ D + +VLSGGS PG+A+R+
Sbjct: 990 PEVLFQPSMIGMEAAGIHETTYNSIMKC---DVDIRKDLYGNIVLSGGSTMFPGIADRMS 1160
Query: 415 KELHSLLPPYMSNGIRVIPPPHGADTAWFGAKLIGSVS 452
KE+ +L P M I+V+ PP + W G ++ S+S
Sbjct: 1161KEITALAPSSMK--IKVVAPPERKYSVWIGGSILASLS 1268
>TC204148 homologue to UP|O81221 (O81221) Actin, complete
Length = 1437
Score = 124 bits (311), Expect = 9e-29
Identities = 87/278 (31%), Positives = 140/278 (50%), Gaps = 10/278 (3%)
Frame = +3
Query: 185 TVYGRMKVKPSSQ-VVVVSLPLCHYDDTESAKASRQQLKEAICAALFDMNVPAVCALNQA 243
T Y ++V P V++ PL + KA+R+++ + + N PA+ QA
Sbjct: 381 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NTPAMYVAIQA 530
Query: 244 TLALYAANQTSGIAVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQQNN 303
L+LYA+ +T+GI ++ G V+ VPI G + + + L LT L + + +
Sbjct: 531 VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL-DLAGRDLTDALMKILTERG 707
Query: 304 LYFESLYT---VRTLKEKLCYVAYDYEAEL-----SKDTHASFEAAEGK-FTLSKERFQT 354
F + VR +KEKL Y+A DYE EL S S+E +G+ T+ ERF+
Sbjct: 708 YSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRC 887
Query: 355 GEILFQPRLAGVRAMSLHHAIALCMDHCHSAELAGGSDWFKTVVLSGGSACLPGLAERLE 414
E+LFQP + G+ A +H + C ++ D + +VLSGGS PG+A+R+
Sbjct: 888 PEVLFQPSMIGMEASGIHETTYNSIMKC---DVDIRKDLYGNIVLSGGSTMFPGIADRMS 1058
Query: 415 KELHSLLPPYMSNGIRVIPPPHGADTAWFGAKLIGSVS 452
KE+ +L P M I+V+ PP + W G ++ S+S
Sbjct: 1059KEISALAPSSMK--IKVVAPPERKYSVWIGGSILASLS 1166
>TC204824 homologue to UP|Q9SLQ6 (Q9SLQ6) Actin isoform B, complete
Length = 1303
Score = 123 bits (308), Expect = 2e-28
Identities = 82/247 (33%), Positives = 129/247 (52%), Gaps = 9/247 (3%)
Frame = +2
Query: 215 KASRQQLKEAICAALFDMNVPAVCALNQATLALYAANQTSGIAVNIGFQVTSVVPILNGK 274
KA+R+++ + + NVPA+ QA L+LYA+ +T+GI ++ G V+ VPI G
Sbjct: 512 KANREKMTQIMFETF---NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGY 682
Query: 275 VMRKVGVEVVGLGALKLTGFLREKMQQNNLYFES---LYTVRTLKEKLCYVAYDYEAEL- 330
+ + + L LT L + + + F + VR +KEKL YVA DYE EL
Sbjct: 683 ALPH-AILRLDLAGRDLTDHLMKILTERGYMFTTSAEREIVRDMKEKLAYVALDYEQELE 859
Query: 331 ----SKDTHASFEAAEGK-FTLSKERFQTGEILFQPRLAGVRAMSLHHAIALCMDHCHSA 385
S S+E +G+ T+ ERF+ E+LFQP + G+ A +H + C
Sbjct: 860 TAKSSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKC--- 1030
Query: 386 ELAGGSDWFKTVVLSGGSACLPGLAERLEKELHSLLPPYMSNGIRVIPPPHGADTAWFGA 445
++ D + +VLSGGS PG+A+R+ KE+ +L P M I+V+ PP + W G
Sbjct: 1031DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMK--IKVVAPPERKYSVWIGG 1204
Query: 446 KLIGSVS 452
++ S+S
Sbjct: 1205SILASLS 1225
>TC204150 UP|Q9M729 (Q9M729) Actin, complete
Length = 1566
Score = 122 bits (306), Expect = 3e-28
Identities = 86/278 (30%), Positives = 140/278 (49%), Gaps = 10/278 (3%)
Frame = +1
Query: 185 TVYGRMKVKPSSQ-VVVVSLPLCHYDDTESAKASRQQLKEAICAALFDMNVPAVCALNQA 243
T Y ++V P V++ PL + KA+R+++ + + N PA+ QA
Sbjct: 382 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NTPAMYVAIQA 531
Query: 244 TLALYAANQTSGIAVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQQNN 303
L+LYA+ +T+GI ++ G V+ VPI G + + + L LT L + + +
Sbjct: 532 VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL-DLAGRDLTDALMKILTERG 708
Query: 304 LYFESLYT---VRTLKEKLCYVAYDYEAEL-----SKDTHASFEAAEGK-FTLSKERFQT 354
F + VR +KEKL Y+A DYE EL S S+E +G+ T+ ERF+
Sbjct: 709 YTFTTSAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRC 888
Query: 355 GEILFQPRLAGVRAMSLHHAIALCMDHCHSAELAGGSDWFKTVVLSGGSACLPGLAERLE 414
E+LFQP + G+ + +H + C ++ D + +VLSGGS PG+A+R+
Sbjct: 889 PEVLFQPSMIGMESPGIHETTYNSIMKC---DVDIRKDLYGNIVLSGGSTMFPGIADRMS 1059
Query: 415 KELHSLLPPYMSNGIRVIPPPHGADTAWFGAKLIGSVS 452
KE+ +L P M I+V+ PP + W G ++ S+S
Sbjct: 1060KEITALAPSSMK--IKVVAPPERKYSVWIGGSILASLS 1167
>TC204149 homologue to UP|O81221 (O81221) Actin, partial (93%)
Length = 1257
Score = 121 bits (304), Expect = 6e-28
Identities = 80/247 (32%), Positives = 129/247 (51%), Gaps = 9/247 (3%)
Frame = +1
Query: 215 KASRQQLKEAICAALFDMNVPAVCALNQATLALYAANQTSGIAVNIGFQVTSVVPILNGK 274
KA+R+++ + + N PA+ QA L+LYA+ +T+GI ++ G V+ VPI G
Sbjct: 286 KANREKMTQIMFETF---NTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGY 456
Query: 275 VMRKVGVEVVGLGALKLTGFLREKMQQNNLYFESLYT---VRTLKEKLCYVAYDYEAEL- 330
+ + + L LT L + + + F + VR +KEKL Y+A DYE EL
Sbjct: 457 ALPHAILRL-DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELE 633
Query: 331 ----SKDTHASFEAAEGK-FTLSKERFQTGEILFQPRLAGVRAMSLHHAIALCMDHCHSA 385
S S+E +G+ T+ ERF+ E+LFQP + G+ A+ +H + C
Sbjct: 634 TSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAVGIHETTYNSIMKC--- 804
Query: 386 ELAGGSDWFKTVVLSGGSACLPGLAERLEKELHSLLPPYMSNGIRVIPPPHGADTAWFGA 445
++ D + +VLSGGS PG+A+R+ KE+ +L P M I+V+ PP + W G
Sbjct: 805 DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMK--IKVVAPPERKYSVWIGG 978
Query: 446 KLIGSVS 452
++ S+S
Sbjct: 979 SILASLS 999
>TC204140 homologue to UP|ACTB_ARATH (P53496) Actin 11, partial (64%)
Length = 1062
Score = 94.0 bits (232), Expect(2) = 3e-23
Identities = 53/147 (36%), Positives = 81/147 (55%), Gaps = 6/147 (4%)
Frame = +1
Query: 312 VRTLKEKLCYVAYDYEAEL-----SKDTHASFEAAEGK-FTLSKERFQTGEILFQPRLAG 365
VR +KEKL Y+A DYE EL S S+E +G+ T+ ERF+ E+LFQP + G
Sbjct: 238 VRDVKEKLSYIALDYEQELETARTSSSVEKSYELPDGQVITIGDERFRCPEVLFQPSMIG 417
Query: 366 VRAMSLHHAIALCMDHCHSAELAGGSDWFKTVVLSGGSACLPGLAERLEKELHSLLPPYM 425
+ A +H + C ++ D + +VLSGG+ PG+A+R+ KE+ +L P M
Sbjct: 418 MEASGIHETTYNSIMKC---DVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSM 588
Query: 426 SNGIRVIPPPHGADTAWFGAKLIGSVS 452
I+V+ PP + W G ++ S+S
Sbjct: 589 K--IKVVAPPERKYSVWIGGSILASLS 663
Score = 32.7 bits (73), Expect(2) = 3e-23
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +3
Query: 242 QATLALYAANQTSGIAVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFL 295
QA L+LYA+ +T+GI ++ G V+ VPI G + + + L LT FL
Sbjct: 21 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDFL 179
>BM107897 homologue to SP|P02578|ACT1 Actin 1. [Amoeba] {Acanthamoeba
castellanii}, partial (62%)
Length = 708
Score = 62.0 bits (149), Expect(2) = 3e-21
Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Frame = +1
Query: 233 NVPAVCALNQATLALYAANQTSGIAVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLT 292
N PA+ QA L+LYA+ +T+GI ++ G VT VPI G + + + L LT
Sbjct: 34 NTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPH-AIMRLDLAGRDLT 210
Query: 293 GFLREKMQQNNLYFESL---YTVRTLKEKLCYVAYDYEAEL-----SKDTHASFEAAEGK 344
+L + + + F + VR +KEKLCYVA D+E E+ S S+E +G+
Sbjct: 211 DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAATSSQLEKSYELPDGQ 390
Score = 58.2 bits (139), Expect(2) = 3e-21
Identities = 33/93 (35%), Positives = 49/93 (52%)
Frame = +2
Query: 350 ERFQTGEILFQPRLAGVRAMSLHHAIALCMDHCHSAELAGGSDWFKTVVLSGGSACLPGL 409
ERF+ E LFQP G+ + +H + C + D + VVLSGG+ PG+
Sbjct: 410 ERFRCPEALFQPSFLGMESSGIHETTYNSIMXC---DXDIRKDLYGNVVLSGGTTMFPGI 580
Query: 410 AERLEKELHSLLPPYMSNGIRVIPPPHGADTAW 442
A+R++KEL +L P M I++I PP + W
Sbjct: 581 ADRMQKELTALAPSTMK--IKIIAPPXRKYSVW 673
>TC207055 homologue to UP|Q9LSD6 (Q9LSD6) ARP2 (Actin-related protein 2),
partial (98%)
Length = 1724
Score = 84.3 bits (207), Expect = 1e-16
Identities = 70/283 (24%), Positives = 124/283 (43%), Gaps = 18/283 (6%)
Frame = +1
Query: 187 YGRMKVKPSSQVVVVSLPLCHYDDTESAKASRQQLKEAICAALFDMNVPAVCALNQATLA 246
+ +K+ P ++++ D + +R+Q+ E + N V QA L
Sbjct: 385 FNELKINPQDCKILLT------DPPLNPSKNREQMVETMFEKY---NFAGVFIQIQAVLT 537
Query: 247 LYAANQTSGIAVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQQNNLYF 306
LYA +G+ ++ G VT VVP+++G + + + + +T +L + + +
Sbjct: 538 LYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHL-TKRMNVAGRHITSYLVDLLSRRGYAL 714
Query: 307 E---SLYTVRTLKEKLCYVAYDY--EAELSKDTH---ASFEAAEGK-FTLSKERFQTGEI 357
TVR +KEKLCY++YDY E +L +T ++ +G+ + ERFQ E
Sbjct: 715 NRTADFETVREIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEA 894
Query: 358 LFQPRLAGVRAMSLHHAIALCMDHCHSAELAGGSDWFKTVVLSGGSACLPGLAERLEKEL 417
LF P L V + + C+ ++ ++ +VLSGGS PGL RLEKE+
Sbjct: 895 LFTPELIDVEGDGMADMVFRCI---QEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEI 1065
Query: 418 HSLLPPYMSNG---------IRVIPPPHGADTAWFGAKLIGSV 451
+ G +R+ PP + G ++ +
Sbjct: 1066LDRYLDVVLKGNRDGLKKLRLRIEDPPRRKHMVYLGGAVLAGI 1194
>TC204143 UP|Q9M729 (Q9M729) Actin, partial (42%)
Length = 768
Score = 83.2 bits (204), Expect = 2e-16
Identities = 48/140 (34%), Positives = 75/140 (53%), Gaps = 6/140 (4%)
Frame = +1
Query: 319 LCYVAYDYEAEL-----SKDTHASFEAAEGK-FTLSKERFQTGEILFQPRLAGVRAMSLH 372
L Y+A DYE EL S S+E +G+ T+ ERF+ E+LFQP + G+ + +H
Sbjct: 1 LAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESPGIH 180
Query: 373 HAIALCMDHCHSAELAGGSDWFKTVVLSGGSACLPGLAERLEKELHSLLPPYMSNGIRVI 432
+ C ++ D + +VLSGGS PG+A+R+ KE+ +L P M I+V+
Sbjct: 181 ETTYNSIMKC---DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPGSMK--IKVV 345
Query: 433 PPPHGADTAWFGAKLIGSVS 452
PP + W G ++ S+S
Sbjct: 346 APPERKYSVWIGGSILASLS 405
>TC204141 homologue to UP|Q7XZJ2 (Q7XZJ2) Actin, partial (34%)
Length = 863
Score = 72.8 bits (177), Expect = 3e-13
Identities = 38/107 (35%), Positives = 59/107 (54%)
Frame = +3
Query: 346 TLSKERFQTGEILFQPRLAGVRAMSLHHAIALCMDHCHSAELAGGSDWFKTVVLSGGSAC 405
T+ ERF+ E+LFQP L G+ A +H + C ++ D + +VLSGGS
Sbjct: 12 TIGSERFRCPEVLFQPSLIGMEATGIHETTYNSIMKC---DVDIRKDLYGNIVLSGGSTM 182
Query: 406 LPGLAERLEKELHSLLPPYMSNGIRVIPPPHGADTAWFGAKLIGSVS 452
PG+A+R+ KE+ +L P M I+V+ PP + W G ++ S+S
Sbjct: 183 FPGIADRMSKEIGALAPSSMK--IKVVAPPERKYSVWIGGSILASLS 317
>AI901246 SP|P10987|ACT Actin-5C. [Fruit fly] {Drosophila melanogaster},
partial (34%)
Length = 420
Score = 68.2 bits (165), Expect = 8e-12
Identities = 36/107 (33%), Positives = 57/107 (52%)
Frame = +1
Query: 346 TLSKERFQTGEILFQPRLAGVRAMSLHHAIALCMDHCHSAELAGGSDWFKTVVLSGGSAC 405
T+ ERF+ E LFQP G+ A +H + C ++ D + VLSGG+
Sbjct: 19 TIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC---DVDIRKDLYANTVLSGGTTM 189
Query: 406 LPGLAERLEKELHSLLPPYMSNGIRVIPPPHGADTAWFGAKLIGSVS 452
PG+A+R++KE+ +L P M I++I PP + W G ++ S+S
Sbjct: 190 YPGIADRMQKEITALAPSTMK--IKIIAPPERKYSVWIGGSILASLS 324
>BQ612342 homologue to PIR|A29044|ATF actin - slime mold (Physarum
polycephalum), partial (35%)
Length = 431
Score = 65.5 bits (158), Expect = 5e-11
Identities = 36/107 (33%), Positives = 57/107 (52%)
Frame = +2
Query: 346 TLSKERFQTGEILFQPRLAGVRAMSLHHAIALCMDHCHSAELAGGSDWFKTVVLSGGSAC 405
T+ ERF+ E LFQP G+ + +H + C ++ D + VVLS G+
Sbjct: 26 TIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKC---DVDIRKDLYGNVVLSVGTTM 196
Query: 406 LPGLAERLEKELHSLLPPYMSNGIRVIPPPHGADTAWFGAKLIGSVS 452
PG+A+R++KEL +L P M I++I PP + W G ++ S+S
Sbjct: 197 FPGIADRVQKELTALAPSTMK--IKIIAPPERKYSVWIGGSILASLS 331
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,844,225
Number of Sequences: 63676
Number of extensions: 415380
Number of successful extensions: 5988
Number of sequences better than 10.0: 159
Number of HSP's better than 10.0 without gapping: 4278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5302
length of query: 457
length of database: 12,639,632
effective HSP length: 100
effective length of query: 357
effective length of database: 6,272,032
effective search space: 2239115424
effective search space used: 2239115424
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Medicago: description of AC145470.4