BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145449.7 + phase: 0 /pseudo
(965 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 246 5e-65
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 243 3e-64
TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei... 234 1e-61
CO983154 224 1e-58
BI427153 215 9e-56
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 190 3e-48
CO981879 95 7e-40
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 150 3e-36
CO981347 90 6e-29
TC213393 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei... 102 1e-26
CO986013 79 6e-25
TC223332 111 1e-24
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti... 105 7e-23
CA801616 weakly similar to GP|21433|emb|CA ORF3 {Solanum tuberos... 93 1e-22
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 100 4e-21
AI901012 52 5e-21
TC207859 99 9e-21
BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa ... 72 1e-19
TC233822 93 5e-19
TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement p... 90 4e-18
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 246 bits (627), Expect = 5e-65
Identities = 167/568 (29%), Positives = 269/568 (46%), Gaps = 11/568 (1%)
Frame = +1
Query: 38 HRRLGHPSFDKLKVLV--------PQLSHLKSLDCESCQLGKHVRASFPSSPNKRSKSPF 89
H+R GH +K ++ P L + C CQ+GK V+ S ++ +
Sbjct: 2077 HQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVL 2256
Query: 90 DIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQLFGAFLTFCSEIKNQFG 149
+++H D+ GP +V S G RY +D FSR TW+ ++++S+ F F ++ +
Sbjct: 2257 ELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLRLQREKD 2436
Query: 150 KGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKHCHLVDTTRTLLI 209
I+ +RSD+ +E+ + F F S GI H+ S TPQQNG+ ERK+ L + R +L
Sbjct: 2437 CVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLH 2616
Query: 210 NAHAPFKFWGDAILTACYLINRMPSSVLDNEIPQSLL---FPKDPLYRVQLRVYGSTCFV 266
P+ W +A+ TACY+ NR+ L P +L + P + ++GS C++
Sbjct: 2617 AKELPYNLWAEAMNTACYIHNRV---TLRRGTPTTLYEIWKGRKPSVK-HFHIFGSPCYI 2784
Query: 267 HDLTPGRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFEDTPFFASPTTT 326
R K+ ++ +FLGYS + YR ++ TR S +V
Sbjct: 2785 LADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINV--------------- 2919
Query: 327 SSTTDVTDSQVIPTPLFHPIFEPPVSTQSSPQLQSNPEFRRYGNIYERRHVEAPETSPID 386
V SP + + E E TS +
Sbjct: 2920 ------------------------VVDDLSPARKKDVE-------------EDVRTSGDN 2988
Query: 387 SSDSAPKTVTTDSSDSATAPISSPVVVPPEPSNDLPIALHKGKRSTANPHPVYNFLSYHR 446
+D+A ++SDSAT S + P + S+ +H + +P+ S
Sbjct: 2989 VADAAKSGENAENSDSATD--ESNINQPDKRSSTRIQKMHPKELIIGDPNRGVTTRSREV 3162
Query: 447 LSPSYFAFVSALSSVSIPKTVHEALSHQEWKQAMIDEMVALESNHTWELVSPSPGKSIVG 506
S FVS + PK V EAL+ + W AM +E+ + N WELV G +++G
Sbjct: 3163 EIVSNSCFVSKIE----PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIG 3330
Query: 507 CR*VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIAMTAMKR* 566
+ +F K +G + R KARLVA GYTQ+ G D+++TF+PVA++ S+RL + + + +
Sbjct: 3331 TKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKF 3510
Query: 567 PLFQLDIKNAFLHGDLEEEIYMEQPSGF 594
L+Q+D+K+AFL+G L EE+Y+EQP GF
Sbjct: 3511 KLYQMDVKSAFLNGYLNEEVYVEQPKGF 3594
Score = 30.0 bits (66), Expect = 5.1
Identities = 18/48 (37%), Positives = 25/48 (51%)
Frame = +3
Query: 823 WVFRCRLGRRCE**TVYF*LLYFCGWKSHFMEEQKANSRCSIKYRSRV 870
WV C LG +C * +F + G + +FM +Q+A I RSRV
Sbjct: 4263 WVL*C*LGWKCR*QKKHFWWMLLFGKQPYFMVQQEAELCVPIYSRSRV 4406
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 243 bits (620), Expect = 3e-64
Identities = 167/570 (29%), Positives = 268/570 (46%), Gaps = 12/570 (2%)
Frame = +1
Query: 38 HRRLGHPSFDKLKVLV--------PQLSHLKSLDCESCQLGKHVRASFPSSPNKRSKSPF 89
H+R GH +K ++ P L + C CQ+GK V+ S ++ +
Sbjct: 2080 HQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVL 2259
Query: 90 DIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQLFGAFLTFCSEIKNQFG 149
+++H D+ GP +V S G RY +D FSR TW+ ++++S F F ++ +
Sbjct: 2260 ELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKD 2439
Query: 150 KGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKHCHLVDTTRTLLI 209
I+ +RSD+ +E+ + F F S GI H+ S TPQQNG+ ERK+ L + R +L
Sbjct: 2440 CVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLH 2619
Query: 210 NAHAPFKFWGDAILTACYLINRMPSSVLDNEIPQSLL---FPKDPLYRVQLRVYGSTCFV 266
P+ W +A+ TACY+ NR+ L P +L + P + ++GS C++
Sbjct: 2620 AKELPYNLWAEAMNTACYIHNRV---TLRRGTPTTLYEIWKGRKPTVK-HFHIFGSPCYI 2787
Query: 267 HDLTPGRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFEDTPFFASPTTT 326
R K+ ++ +FLGYS + YR ++ TR S +V + TP
Sbjct: 2788 LADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTP-------- 2943
Query: 327 SSTTDVTDSQVIPTPLFHPIFEPPVSTQSSPQLQSNPEFRRYGNIYERRHVEAPETSPID 386
+ DV + V + D
Sbjct: 2944 ARKKDVEED-----------------------------------------VRTSGDNVAD 3000
Query: 387 SSDSAPKTVTTDSSDSATAPISSPVVVPPEPSNDLPI-ALHKGKRSTANPHPVYNFLSYH 445
++ SA ++SDSAT P + P+ + I +H + +P+ S
Sbjct: 3001 TAKSAE---NAENSDSAT---DEPNINQPDKRPSIRIQKMHPKELIIGDPNRGVTTRSRE 3162
Query: 446 RLSPSYFAFVSALSSVSIPKTVHEALSHQEWKQAMIDEMVALESNHTWELVSPSPGKSIV 505
S FVS + PK V EAL+ + W AM +E+ + N WELV G +++
Sbjct: 3163 IEIVSNSCFVSKIE----PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVI 3330
Query: 506 GCR*VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIAMTAMKR 565
G + +F K +G + R KARLVA GYTQ+ G D+++TF+PVA++ S+RL + + + +
Sbjct: 3331 GTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILK 3510
Query: 566 *PLFQLDIKNAFLHGDLEEEIYMEQPSGFV 595
L+Q+D+K+AFL+G L EE Y+EQP GFV
Sbjct: 3511 FKLYQMDVKSAFLNGYLNEEAYVEQPKGFV 3600
Score = 29.6 bits (65), Expect = 6.7
Identities = 18/48 (37%), Positives = 26/48 (53%)
Frame = +3
Query: 823 WVFRCRLGRRCE**TVYF*LLYFCGWKSHFMEEQKANSRCSIKYRSRV 870
WV C LG +C * +F ++ G +S+FM +Q+A I SRV
Sbjct: 4266 WVL*C*LGWKCR*QKKHFWWMFLFGNQSYFMVQQEAELCVPIYC*SRV 4409
>TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
(Fragment), partial (28%)
Length = 865
Score = 234 bits (597), Expect = 1e-61
Identities = 117/211 (55%), Positives = 152/211 (71%)
Frame = +2
Query: 4 TGKTIGT*SISQGLYYLHSQSSNICGVSASPDMIHRRLGHPSFDKLKVLVPQLSHLKSLD 63
TG TIG S GLYYL S +C SP ++H RLGHP KLK++VP L +K L
Sbjct: 215 TGWTIGVGIESHGLYYLKPNLSWVCSAVTSPKLLHERLGHPHLSKLKIMVPSLEKIKDLF 394
Query: 64 CESCQLGKHVRASFPSSPNKRSKSPFDIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTW 123
CESCQLGKHVR+S R SPF ++H D+WGP+RV S++ RY+VTFID FS+CT
Sbjct: 395 CESCQLGKHVRSSX-RHVESRVDSPFLVIHXDIWGPNRV-SSMSYRYFVTFIDEFSQCTR 568
Query: 124 IILLKDRSQLFGAFLTFCSEIKNQFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSC 183
+ L+K+RS++ +FLT ++IK QFGK I+ILRSDNAKEYF + + F ++ GI+HQ SC
Sbjct: 569 VFLMKERSEIL-SFLTSVNKIKTQFGKTIKILRSDNAKEYFSSVISPFXSAQGILHQFSC 745
Query: 184 PHTPQQNGVAERKHCHLVDTTRTLLINAHAP 214
PHTPQQN +AERK+ HLV+T RTLL++A+ P
Sbjct: 746 PHTPQQNDIAERKNRHLVETARTLLLHANEP 838
>CO983154
Length = 568
Score = 224 bits (572), Expect = 1e-58
Identities = 104/178 (58%), Positives = 134/178 (74%)
Frame = +3
Query: 185 HTPQQNGVAERKHCHLVDTTRTLLINAHAPFKFWGDAILTACYLINRMPSSVLDNEIPQS 244
HTPQQNG+AERK+ HL++T R+L++N + P WGDA+LT+C+LINRMPSS L+N+IP S
Sbjct: 3 HTPQQNGIAERKNRHLLETARSLMLNLNVPIHHWGDAVLTSCFLINRMPSSSLENQIPHS 182
Query: 245 LLFPKDPLYRVQLRVYGSTCFVHDLTPGRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRR 304
L+FP DPL+ V +V+G TCFVHDL+PG DKLSAR+VKCVFLGYSR QKGY+CYSP+ RR
Sbjct: 183 LVFPHDPLFHVSPKVFGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQKGYKCYSPTMRR 362
Query: 305 FYISADVTFFEDTPFFASPTTTSSTTDVTDSQVIPTPLFHPIFEPPVSTQSSPQLQSN 362
+Y+SADVTFFEDTPFF+ SS+ +V+P P +P+ + P N
Sbjct: 363 YYMSADVTFFEDTPFFSPSVDHSSSL----QEVLPIPSPYPLXNSGQNVSIVPSSSPN 524
>BI427153
Length = 422
Score = 215 bits (547), Expect = 9e-56
Identities = 95/139 (68%), Positives = 120/139 (85%)
Frame = +1
Query: 179 HQSSCPHTPQQNGVAERKHCHLVDTTRTLLINAHAPFKFWGDAILTACYLINRMPSSVLD 238
HQS+CPHTPQQNG+AERK+ HL++T R+L++N++ P WGDA+LTAC+LINRMPSS L+
Sbjct: 1 HQSTCPHTPQQNGIAERKNHHLLETARSLMLNSNVPTHHWGDAVLTACFLINRMPSSSLE 180
Query: 239 NEIPQSLLFPKDPLYRVQLRVYGSTCFVHDLTPGRDKLSARAVKCVFLGYSRTQKGYRCY 298
N+IP S++FP D L+ V +V+G TCFVHDL+PG DKLSAR+VKCVFLGYSR QKGY CY
Sbjct: 181 NQIPHSIVFPNDLLFYVSPKVFGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQKGYTCY 360
Query: 299 SPSTRRFYISADVTFFEDT 317
P+ RR+Y+SA+VTFFEDT
Sbjct: 361 FPNMRRYYMSANVTFFEDT 417
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 190 bits (482), Expect = 3e-48
Identities = 93/135 (68%), Positives = 112/135 (82%)
Frame = +3
Query: 458 LSSVSIPKTVHEALSHQEWKQAMIDEMVALESNHTWELVSPSPGKSIVGCR*VFNVKVGL 517
LSS+++P T+ EAL H W+QAM+DEM ALE+N TWELV PGK+ VGCR V+ VKVG
Sbjct: 3 LSSLTVPSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGP 182
Query: 518 DGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIAMTAMKR*PLFQLDIKNAF 577
+G+VDRLKARLVA GYTQVYG +Y DTFSPV +T+VRLF+AM A++ PL QLDIKNAF
Sbjct: 183 NGKVDRLKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAF 362
Query: 578 LHGDLEEEIYMEQPS 592
LHGDLEE+IYMEQP+
Sbjct: 363 LHGDLEEDIYMEQPN 407
>CO981879
Length = 576
Score = 95.1 bits (235), Expect(2) = 7e-40
Identities = 49/95 (51%), Positives = 58/95 (60%)
Frame = -1
Query: 137 FLTFCSEIKNQFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERK 196
F TF I+ QF I++ RSDN +EYF + GIIHQSSC TPQQNGVAERK
Sbjct: 567 FKTFFQMIQTQFQVKIKVFRSDNGREYFNKHLSKXXLENGIIHQSSCVDTPQQNGVAERK 388
Query: 197 HCHLVDTTRTLLINAHAPFKFWGDAILTACYLINR 231
+ HL + R LL AP WG+AILT YL N+
Sbjct: 387 NRHLXEVARALLFQNKAPKYXWGEAILTGTYLKNK 283
Score = 88.6 bits (218), Expect(2) = 7e-40
Identities = 42/94 (44%), Positives = 62/94 (65%), Gaps = 4/94 (4%)
Frame = -2
Query: 231 RMPSSVLDNEIPQSLL---FPKDPLY-RVQLRVYGSTCFVHDLTPGRDKLSARAVKCVFL 286
RMPS +L+ P + FP + L + L+++G T FVH P + KL RA KCVF+
Sbjct: 284 RMPSKILNFRTPLDVFTSAFPNNRLSCTLPLKIFGCTVFVHIHEPNQGKLEPRAKKCVFV 105
Query: 287 GYSRTQKGYRCYSPSTRRFYISADVTFFEDTPFF 320
GY+ QKGY+C+ P++++ +++ DVTFFE TPFF
Sbjct: 104 GYAPNQKGYKCFDPTSKKTFVTIDVTFFEKTPFF 3
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 150 bits (378), Expect = 3e-36
Identities = 76/99 (76%), Positives = 84/99 (84%)
Frame = -2
Query: 500 PGKSIVGCR*VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIA 559
PGK+ VGCR V+ VKVG G+VDRLKARLVA GYTQVYG DY DTFSPVAK+T+VRLF+A
Sbjct: 394 PGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVRLFLA 215
Query: 560 MTAMKR*PLFQLDIKNAFLHGDLEEEIYMEQPSGFVAWG 598
M A+ PL QLDIKNAFLHGDLEE+IYMEQP GFVA G
Sbjct: 214 MAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQG 98
>CO981347
Length = 624
Score = 89.7 bits (221), Expect(3) = 6e-29
Identities = 43/99 (43%), Positives = 59/99 (59%)
Frame = +2
Query: 144 IKNQFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKHCHLVDT 203
I NQ G +++LR+DN E+ FN F +GI PHTP QNG+AER + +++
Sbjct: 137 IGNQLGTKLKVLRTDNGLEFVLEQFNEFCRKIGIKRHKIVPHTP*QNGLAERMNMTILER 316
Query: 204 TRTLLINAHAPFKFWGDAILTACYLINRMPSSVLDNEIP 242
R +L++A P FWG+A T YLINR PSS L + P
Sbjct: 317 VRCMLLSARLPKTFWGEAANTTSYLINRCPSSTLGFKTP 433
Score = 39.3 bits (90), Expect(3) = 6e-29
Identities = 20/42 (47%), Positives = 27/42 (63%)
Frame = +3
Query: 257 LRVYGSTCFVHDLTPGRDKLSARAVKCVFLGYSRTQKGYRCY 298
L+V+GS F H + KL ARAVKCVF+GY + K Y+ +
Sbjct: 474 LKVFGSLAFDH---VKQGKLDARAVKCVFIGYPKGVKRYKLW 590
Score = 38.1 bits (87), Expect(3) = 6e-29
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +3
Query: 99 PSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQLF 134
PSRV + G Y++T ID FSR W+ +LK++S+ F
Sbjct: 3 PSRVKTHGGSSYFLTIIDDFSRRVWLYVLKNKSESF 110
>TC213393 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
(Fragment), partial (23%)
Length = 678
Score = 102 bits (253), Expect(3) = 1e-26
Identities = 52/99 (52%), Positives = 66/99 (66%)
Frame = -2
Query: 48 KLKVLVPQLSHLKSLDCESCQLGKHVRASFPSSPNKRSKSPFDIVHSDVWGPSRVMSTLG 107
K K +V LS L +L CESCQ GKHV++SFP R + PF +VHSDVWG M TL
Sbjct: 395 KQKQMVSSLSKLPTLSCESCQFGKHVQSSFPYCVICRDRFPFVLVHSDVWGLCHGMPTLE 216
Query: 108 *RYYVTFIDGFSRCTWIILLKDRSQLFGAFLTFCSEIKN 146
RY+VTFI+ +S TW+ L+ +RS+LF F +F EIKN
Sbjct: 215 SRYFVTFIEDYS*QTWLFLMVNRSELF*IFTSFYQEIKN 99
Score = 32.0 bits (71), Expect(3) = 1e-26
Identities = 17/33 (51%), Positives = 18/33 (54%)
Frame = -1
Query: 142 SEIKNQFGKGIRILRSDNAKEYFFAPFNSFMAS 174
S K QFG I L+SD EY F SFMAS
Sbjct: 114 SRNKKQFGVLIHTLQSDTTHEYLSQQFQSFMAS 16
Score = 25.4 bits (54), Expect(3) = 1e-26
Identities = 10/16 (62%), Positives = 13/16 (80%)
Frame = -3
Query: 30 VSASPDMIHRRLGHPS 45
V+ SP +IH +LGHPS
Sbjct: 448 VAYSPILIHYKLGHPS 401
>CO986013
Length = 803
Score = 78.6 bits (192), Expect(2) = 6e-25
Identities = 38/67 (56%), Positives = 48/67 (70%)
Frame = -2
Query: 227 YLINRMPSSVLDNEIPQSLLFPKDPLYRVQLRVYGSTCFVHDLTPGRDKLSARAVKCVFL 286
+LINRM SS +DN +P +LF + L + RV+GS C VH LT G DKL ARA+KC+FL
Sbjct: 562 HLINRMASSSIDNNVPHYVLFLDELLSHIPPRVFGSICCVHYLTRGLDKLIARAIKCIFL 383
Query: 287 GYSRTQK 293
GYSR +K
Sbjct: 382 GYSRNKK 362
Score = 55.1 bits (131), Expect(2) = 6e-25
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -1
Query: 292 QKGYRCYSPSTRRFYISADVTFFEDTPF 319
QKGY CYSP+ RFY+SADVTFFEDTPF
Sbjct: 368 QKGYWCYSPANHRFYMSADVTFFEDTPF 285
>TC223332
Length = 427
Score = 111 bits (278), Expect = 1e-24
Identities = 74/162 (45%), Positives = 90/162 (54%)
Frame = +2
Query: 266 VHDLTPGRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFEDTPFFASPTT 325
VHDLTPG DKL ARA+KC+FL YS TQKGY CYS + RFY+S DVTFFEDTPFF S +
Sbjct: 2 VHDLTPGLDKLKARAIKCIFLDYSCTQKGYWCYSLANHRFYMSVDVTFFEDTPFFNSSIS 181
Query: 326 TSSTTDVTDSQVIPTPLFHPIFEPPVSTQSSPQLQSNPEFRRYGNIYERRHVEAPETSPI 385
+ S SQ++P P P T SSP S P F IY R P P+
Sbjct: 182 SKSV-----SQLLPIPSV-----IPHRTVSSP--PSAPLFL----IYHR----CPRPQPV 301
Query: 386 DSSDSAPKTVTTDSSDSATAPISSPVVVPPEPSNDLPIALHK 427
+ +T ++ S+ API PV V +DL I +HK
Sbjct: 302 E------PPLTEETGTSSLAPIIHPVAV----DSDLSITIHK 397
>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
Length = 558
Score = 105 bits (263), Expect = 7e-23
Identities = 54/80 (67%), Positives = 59/80 (73%)
Frame = +1
Query: 519 GQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIAMTAMKR*PLFQLDIKNAFL 578
G +D+ KARLVA YTQVYGQDY TFSPVAKM V L +M + PLF LD KNAFL
Sbjct: 28 GTIDQFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAFL 207
Query: 579 HGDLEEEIYMEQPSGFVAWG 598
HG LEEE+YMEQP GFVA G
Sbjct: 208 HGYLEEEVYMEQPLGFVAQG 267
>CA801616 weakly similar to GP|21433|emb|CA ORF3 {Solanum tuberosum}, partial
(5%)
Length = 409
Score = 93.2 bits (230), Expect(2) = 1e-22
Identities = 51/106 (48%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Frame = +3
Query: 372 YERRHVEAPET-SPIDSSDSAPKTVTTDSSDSATAPISSPVVVPPEPSNDLPIALHKGKR 430
Y+RR T S DS P ++ + D AT+ P SN PI + KG R
Sbjct: 24 YQRRTQSIGSTVSEASPPDSHPSSINPQAMDPATSH--------PSDSN-WPIVIRKGTR 176
Query: 431 STANPHPVYNFLSYHRLSPSYFAFVSALSSVSIPKTVHEALSHQEW 476
S+ NPHP+YNFLSYHRLSPSY +FV +LSS S+P +HEALSH W
Sbjct: 177 SSRNPHPIYNFLSYHRLSPSYSSFVFSLSSHSVPSNIHEALSHPGW 314
Score = 32.7 bits (73), Expect(2) = 1e-22
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = +1
Query: 479 AMIDEMVALESNHTWELVSPSPGKSIVG 506
AMI EM LE + TWEL PGK VG
Sbjct: 325 AMIGEMQVLEHSGTWELFPLPPGKKAVG 408
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 100 bits (248), Expect = 4e-21
Identities = 48/116 (41%), Positives = 76/116 (65%)
Frame = -3
Query: 479 AMIDEMVALESNHTWELVSPSPGKSIVGCR*VFNVKVGLDGQVDRLKARLVAIGYTQVYG 538
AM +E+ E N+ W+LV ++G + VF K+ G + R KARLVA GY Q G
Sbjct: 458 AMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEG 279
Query: 539 QDYNDTFSPVAKMTSVRLFIAMTAMKR*PLFQLDIKNAFLHGDLEEEIYMEQPSGF 594
DY +T++PVA++ +R+ +A ++ L+Q+D+K+AFL+G ++EE+Y+EQP GF
Sbjct: 278 IDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGF 111
>AI901012
Length = 410
Score = 52.0 bits (123), Expect(3) = 5e-21
Identities = 24/41 (58%), Positives = 28/41 (67%)
Frame = +2
Query: 161 KEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKHCHLV 201
K F F +FM S G+IHQSSCPHT QQNGVA K H++
Sbjct: 287 KRILFYSFFTFMTSHGMIHQSSCPHTLQQNGVANHKLQHII 409
Score = 50.4 bits (119), Expect(3) = 5e-21
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +1
Query: 87 SPFDIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTWIIL 126
S +IVHS++WG S ++S LG RYYVTFID FSR T +L
Sbjct: 67 SSANIVHSNIWGHSCILSILGFRYYVTFIDDFSRHTXTLL 186
Score = 37.7 bits (86), Expect(3) = 5e-21
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +3
Query: 141 CSEIKNQFGKGIRILRSDNAKEYFFAPFN 169
C EI QFG IR L SD+A+EYFF F+
Sbjct: 228 CLEIHTQFGNKIRALHSDDAREYFFILFS 314
>TC207859
Length = 751
Score = 99.0 bits (245), Expect = 9e-21
Identities = 51/98 (52%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Frame = +1
Query: 28 CGVSASPDMIHRRLGHPSFDKLKVLVPQLSHLKSLDCESCQLGKHVRASFPSSPNKRSKS 87
C + SP++ H L HPS +KL +LVP +S +KSL CES LGKHV + NK S
Sbjct: 451 CVSTISPELAH*HLHHPSLNKLHLLVPSVSIIKSLQCESYLLGKHVCHTCSPHVNKHVAS 630
Query: 88 PFDIVHSDVWGPSRVMSTLG*RYYVTFIDG-FSRCTWI 124
PF +VHSD+WG S V TLG Y+VTFID F +CTW+
Sbjct: 631 PFALVHSDIWGLSCVYLTLGYFYFVTFIDDFFLKCTWV 744
>BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa (japonica
cultivar-group)}, partial (18%)
Length = 430
Score = 72.4 bits (176), Expect(2) = 1e-19
Identities = 38/94 (40%), Positives = 57/94 (60%)
Frame = +1
Query: 458 LSSVSIPKTVHEALSHQEWKQAMIDEMVALESNHTWELVSPSPGKSIVGCR*VFNVKVGL 517
L + + P TV +AL W+QAM + AL N T L S GK+ + C+ VF +K L
Sbjct: 16 LFTTAEPSTVKQALISPPWRQAMQADFDALMENKTLTLTSLPSGKAAIDCKWVFRIKENL 195
Query: 518 DGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKM 551
G ++R ++RLVA G+ +G DY++TFSPV ++
Sbjct: 196 YGTLNRYRSRLVAKGFHLKFGCDYSETFSPVIEL 297
Score = 43.5 bits (101), Expect(2) = 1e-19
Identities = 24/39 (61%), Positives = 27/39 (68%)
Frame = +3
Query: 556 LFIAMTAMKR*PLFQLDIKNAFLHGDLEEEIYMEQPSGF 594
LFIA+T PL Q+DI NAFLHG L EE+YM Q GF
Sbjct: 315 LFIALT--NHWPLQQVDINNAFLHGLLTEEVYMVQLPGF 425
>TC233822
Length = 632
Score = 93.2 bits (230), Expect = 5e-19
Identities = 53/109 (48%), Positives = 65/109 (59%)
Frame = +2
Query: 3 NTGKTIGT*SISQGLYYLHSQSSNICGVSASPDMIHRRLGHPSFDKLKVLVPQLSHLKSL 62
+T IG S+GLYYL SS C + SP ++H LGHP KLK +VP L+ L+ L
Sbjct: 314 DTSWLIGVEHESRGLYYLEISSSMSCFATPSPKLLHNHLGHPHLLKLK-MVPSLNKLQVL 490
Query: 63 DCESCQLGKHVRASFPSSPNKRSKSPFDIVHSDVWGPSRVMSTLG*RYY 111
+CESCQLGKHVR FP R S F + SD+W PS V S G RY+
Sbjct: 491 ECESCQLGKHVR-FFPKRTETRCSSVFSTIPSDIWDPSCVTS-FGFRYF 631
>TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement pol
polyprotein, partial (4%)
Length = 919
Score = 90.1 bits (222), Expect = 4e-18
Identities = 51/145 (35%), Positives = 78/145 (53%)
Frame = +1
Query: 64 CESCQLGKHVRASFPSSPNKRSKSPFDIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTW 123
C++C++GK R SFP+ + R K IVH D+ + + Y++TFID FS+ W
Sbjct: 331 CDTCEIGKKHRESFPTGKSWRMKKLLKIVHLDLC-TVEIPTHGDNNYFITFIDDFSKKMW 507
Query: 124 IILLKDRSQLFGAFLTFCSEIKNQFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSC 183
+ LK +S+ AF F + + Q G ++ L D +EY + F GI HQ +
Sbjct: 508 VYFLKQKSEACNAFKMFKAFAEKQNGCKVKALIIDKGQEYL--SYTIFFEKHGIQHQLTT 681
Query: 184 PHTPQQNGVAERKHCHLVDTTRTLL 208
+TPQ NGV ERK+ ++D R +L
Sbjct: 682 KYTPQHNGVTERKNKTIMDMVRCML 756
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.339 0.146 0.489
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,763,946
Number of Sequences: 63676
Number of extensions: 799348
Number of successful extensions: 7051
Number of sequences better than 10.0: 170
Number of HSP's better than 10.0 without gapping: 6682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6958
length of query: 965
length of database: 12,639,632
effective HSP length: 106
effective length of query: 859
effective length of database: 5,889,976
effective search space: 5059489384
effective search space used: 5059489384
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 64 (29.3 bits)
Medicago: description of AC145449.7