BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145330.14 - phase: 0
(1199 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 403 e-112
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 398 e-111
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 189 8e-48
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 177 3e-44
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 169 5e-42
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 169 9e-42
BE474381 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 121 1e-40
BI969608 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 161 1e-39
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti... 157 3e-38
TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotr... 135 3e-37
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 152 9e-37
BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Ara... 149 6e-36
BM307983 149 6e-36
CD412284 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 144 2e-34
BI787454 weakly similar to GP|21434|emb|CA ORF4 {Solanum tuberos... 142 1e-33
BU764568 109 2e-31
BM527454 weakly similar to GP|27901709|gb| gag-pol polyprotein {... 80 1e-30
BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa ... 96 2e-29
TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, ... 126 5e-29
BU548243 126 5e-29
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 403 bits (1035), Expect = e-112
Identities = 223/600 (37%), Positives = 351/600 (58%), Gaps = 12/600 (2%)
Frame = +1
Query: 605 LQPCQESEPRNDPNHHPNPGKSSIPKCRGKSSSITTSDDPDLHIPIAIRKPVRSCTKHPM 664
L P ++ + D + + +S + +D+P+++ P R +R HP
Sbjct: 2935 LTPARKKDVEEDVRTSGDNVADTAKSAENAENSDSATDEPNINQPDK-RPSIRIQKMHPK 3111
Query: 665 AKFVSYSNLSS----------SFAAFTSQLSTVEIPKNVQEALKIPKWKEAVLEEMRALE 714
+ N S + F S++ PKNV+EAL W A+ EE+ +
Sbjct: 3112 ELIIGDPNRGVTTRSREIEIVSNSCFVSKIE----PKNVKEALTDEFWINAMQEELEQFK 3279
Query: 715 KNKTWKIMTLPAGKNTVGCKWVFTVKYNSDNTVERYKARLVAKGFTQAYGIDYSETFAPV 774
+N+ W+++ P G N +G KW+F K N + + R KARLVA+G+TQ G+D+ ETFAPV
Sbjct: 3280 RNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPV 3459
Query: 775 AKLNTVRVLLSLAVNLDWPLNQLDVKNAFLNGDLQEEVYMDSPPGFED-KFGLNVCKLQK 833
A+L ++R+LL +A L + L Q+DVK+AFLNG L EE Y++ P GF D +V +L+K
Sbjct: 3460 ARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKK 3639
Query: 834 SLYGLKQSPRAWFEKFTWSVKKQGYMQAQSDHTLFMRFSNDGKIAILIVYVDDIILTGDD 893
+LYGLKQ+PRAW+E+ T + +QGY + D TLF++ + + I +YVDDI+ G
Sbjct: 3640 ALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVK-QDAENLMIAQIYVDDIVFGGMS 3816
Query: 894 IVEMDRLKKNLAKEFEIKDLGALKYFLGMEVARSRKGIVVSQRKYILDLLEETGMSGCRP 953
+ + + EFE+ +G L YFLG++V + I +SQ KY +++++ GM
Sbjct: 3817 NEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASH 3996
Query: 954 ADTPMELNAKL-WEKGNVPVDIGRYQRLVGKLIYLAHTRPDIAFSVSVVSQFMHSPYEEH 1012
TP + KL ++ VD Y+ ++G L+YL +RPDI ++V V +++ +P H
Sbjct: 3997 KRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISH 4176
Query: 1013 LEAVYRILRYLKSNPGKGLYFKKTNDRDVSIFTDADWAGSVIDRKSTTGYCAYVWGNLVT 1072
L V RIL+Y+ G+ + +D + + DADWAGS DRKST+G C Y+ NL++
Sbjct: 4177 LNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSADDRKSTSGGCFYLGTNLIS 4356
Query: 1073 WRSKKQGVVARSSAEAEFRAMAQGICELLWIQKLLEELKLKIDLPLKLFCDSKAAISIAH 1132
W SKKQ V+ S+AEAE+ A +L+W++++L+E ++ D+ + L+CD+ +AI+I+
Sbjct: 4357 WFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDV-MTLYCDNMSAINISK 4533
Query: 1133 NPVQHDRTKHIEIDRHFIKEKIVSGTICLPYVTSNEQTADILTKSLARPNFERLIVKLGM 1192
NPVQH RTKHI+I H+I++ + I L +V + EQ ADI TK+L FE+L KLG+
Sbjct: 4534 NPVQHSRTKHIDIRHHYIRDLVDDKVITLEHVDTEEQIADIFTKALDANQFEKLRGKLGI 4713
Score = 42.7 bits (99), Expect = 0.001
Identities = 34/148 (22%), Positives = 53/148 (34%)
Frame = +1
Query: 310 GNEEGKRDGKKPFCDHCNRQWHTRDTCWKLHGKPPNWKKKGGKEGRALQATTSDQEHQSS 369
G ++ K KK C +C + H + C+ LHG P H +
Sbjct: 1474 GTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHP----------------------HHGT 1587
Query: 370 SSSFPFTKEQLDQLYKMFGSQTPSCSIAQIGNFPNTALVSVKPSPTWIIDSGATDHMTGE 429
SS K +K+ + +T+L W +DSG + HMTG
Sbjct: 1588 QSSSSGRKMMWVPKHKI------------VSLVVHTSL-RASAKEDWYLDSGCSRHMTGV 1728
Query: 430 SSLFASYSPCAGNHKIKIADGSLSAIAG 457
+ PC+ ++ + DGS I G
Sbjct: 1729 KEFLVNIEPCSTSY-VTFGDGSKGKITG 1809
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 398 bits (1022), Expect = e-111
Identities = 207/505 (40%), Positives = 320/505 (62%), Gaps = 2/505 (0%)
Frame = +1
Query: 690 PKNVQEALKIPKWKEAVLEEMRALEKNKTWKIMTLPAGKNTVGCKWVFTVKYNSDNTVER 749
PKNV+EAL W A+ EE+ ++N+ W+++ P G N +G KW+F K N + + R
Sbjct: 3202 PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITR 3381
Query: 750 YKARLVAKGFTQAYGIDYSETFAPVAKLNTVRVLLSLAVNLDWPLNQLDVKNAFLNGDLQ 809
KARLVA+G+TQ G+D+ ETFAPVA+L ++R+LL +A L + L Q+DVK+AFLNG L
Sbjct: 3382 NKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLN 3561
Query: 810 EEVYMDSPPGFED-KFGLNVCKLQKSLYGLKQSPRAWFEKFTWSVKKQGYMQAQSDHTLF 868
EEVY++ P GF D +V +L+K+LYGLKQ+PRAW+E+ T + +QGY + D TLF
Sbjct: 3562 EEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLF 3741
Query: 869 MRFSNDGKIAILIVYVDDIILTGDDIVEMDRLKKNLAKEFEIKDLGALKYFLGMEVARSR 928
++ + + I +YVDDI+ G + + + EFE+ +G L YFLG++V +
Sbjct: 3742 VK-QDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQME 3918
Query: 929 KGIVVSQRKYILDLLEETGMSGCRPADTPMELNAKL-WEKGNVPVDIGRYQRLVGKLIYL 987
I +SQ +Y +++++ GM TP + KL ++ VD Y+ ++G L+YL
Sbjct: 3919 DSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYL 4098
Query: 988 AHTRPDIAFSVSVVSQFMHSPYEEHLEAVYRILRYLKSNPGKGLYFKKTNDRDVSIFTDA 1047
+RPDI ++V V +++ +P HL V RIL+Y+ G+ + ++ + + DA
Sbjct: 4099 TASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDA 4278
Query: 1048 DWAGSVIDRKSTTGYCAYVWGNLVTWRSKKQGVVARSSAEAEFRAMAQGICELLWIQKLL 1107
DWAGS DRKST+G C Y+ NL++W SKKQ V+ S+AEAE+ A +L+W++++L
Sbjct: 4279 DWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQML 4458
Query: 1108 EELKLKIDLPLKLFCDSKAAISIAHNPVQHDRTKHIEIDRHFIKEKIVSGTICLPYVTSN 1167
+E ++ D+ + L+CD+ +AI+I+ NPVQH RTKHI+I H+I++ + I L +V +
Sbjct: 4459 KEYNVEQDV-MTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTE 4635
Query: 1168 EQTADILTKSLARPNFERLIVKLGM 1192
EQ ADI TK+L FE+L KLG+
Sbjct: 4636 EQIADIFTKALDANQFEKLRGKLGI 4710
Score = 40.0 bits (92), Expect = 0.006
Identities = 34/148 (22%), Positives = 52/148 (34%)
Frame = +1
Query: 310 GNEEGKRDGKKPFCDHCNRQWHTRDTCWKLHGKPPNWKKKGGKEGRALQATTSDQEHQSS 369
G ++ K KK C +C + H + C+ LHG P H +
Sbjct: 1471 GMQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHP----------------------HHGT 1584
Query: 370 SSSFPFTKEQLDQLYKMFGSQTPSCSIAQIGNFPNTALVSVKPSPTWIIDSGATDHMTGE 429
SS K +K + +T+L W +DSG + HMTG
Sbjct: 1585 QSSNSRKKMMWVPKHKA------------VSLVVHTSL-RASAKEDWYLDSGCSRHMTGV 1725
Query: 430 SSLFASYSPCAGNHKIKIADGSLSAIAG 457
+ PC+ ++ + DGS I G
Sbjct: 1726 KEFLLNIEPCSTSY-VTFGDGSKGKIIG 1806
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 189 bits (479), Expect = 8e-48
Identities = 89/158 (56%), Positives = 122/158 (76%)
Frame = +2
Query: 1041 VSIFTDADWAGSVIDRKSTTGYCAYVWGNLVTWRSKKQGVVARSSAEAEFRAMAQGICEL 1100
+S + DADWAG +DR+ST+GYC ++ GNLV+W+SKKQ VVARSSAEAE+R+MA CEL
Sbjct: 17 LSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCEL 196
Query: 1101 LWIQKLLEELKLKIDLPLKLFCDSKAAISIAHNPVQHDRTKHIEIDRHFIKEKIVSGTIC 1160
+WI++ L+EL+ +L +KL+CD++AA+ IA NPV H+RTKHIEID HFI+EK++S I
Sbjct: 197 MWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEIV 376
Query: 1161 LPYVTSNEQTADILTKSLARPNFERLIVKLGMTNIYAP 1198
++ SN+Q DILTKSL P + + KLG ++YAP
Sbjct: 377 TEFIGSNDQPVDILTKSLRGPKIQIVCSKLGAYDLYAP 490
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 177 bits (448), Expect = 3e-44
Identities = 83/129 (64%), Positives = 104/129 (80%), Gaps = 2/129 (1%)
Frame = -2
Query: 724 LPAGKNTVGCKWVFTVKYNSDNTVERYKARLVAKGFTQAYGIDYSETFAPVAKLNTVRVL 783
LP GK VGC+WV+TVK V+R KARLVAKG+TQ YGIDY +TF+PVAKL TVR+
Sbjct: 400 LPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVRLF 221
Query: 784 LSLAVNLDWPLNQLDVKNAFLNGDLQEEVYMDSPPGF--EDKFGLNVCKLQKSLYGLKQS 841
L++A WPL+QLD+KNAFL+GDL+E++YM+ PPGF + ++GL VCKL +SLYGLKQS
Sbjct: 220 LAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGL-VCKLHRSLYGLKQS 44
Query: 842 PRAWFEKFT 850
PRAWF KF+
Sbjct: 43 PRAWFGKFS 17
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 169 bits (429), Expect = 5e-42
Identities = 74/134 (55%), Positives = 106/134 (78%)
Frame = +3
Query: 684 LSTVEIPKNVQEALKIPKWKEAVLEEMRALEKNKTWKIMTLPAGKNTVGCKWVFTVKYNS 743
LS++ +P ++EAL P W++A+++EM+ALE N TW+++ LP GK TVGC+WV+TVK
Sbjct: 3 LSSLTVPSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGP 182
Query: 744 DNTVERYKARLVAKGFTQAYGIDYSETFAPVAKLNTVRVLLSLAVNLDWPLNQLDVKNAF 803
+ V+R KARLVAKG+TQ YGI+Y +TF+PV L TVR+ L++A WPL+QLD+KNAF
Sbjct: 183 NGKVDRLKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAF 362
Query: 804 LNGDLQEEVYMDSP 817
L+GDL+E++YM+ P
Sbjct: 363 LHGDLEEDIYMEQP 404
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 169 bits (427), Expect = 9e-42
Identities = 86/222 (38%), Positives = 137/222 (60%), Gaps = 3/222 (1%)
Frame = +1
Query: 972 VDIGRYQRLVGKLIYLAHTRPDIAFSVSVVSQFMHSPYEEHLEAVYRILRYLKSNPGKGL 1031
VD+ ++RL+G L YL ++RP+I F+VS++S+FM P H++A R+LR +K G G+
Sbjct: 7 VDVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGV 186
Query: 1032 YFK---KTNDRDVSIFTDADWAGSVIDRKSTTGYCAYVWGNLVTWRSKKQGVVARSSAEA 1088
F K+ D+ +TD+DW KST GY V SKKQ V+A S+ EA
Sbjct: 187 LFPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEA 366
Query: 1089 EFRAMAQGICELLWIQKLLEELKLKIDLPLKLFCDSKAAISIAHNPVQHDRTKHIEIDRH 1148
E+ A + G C+ +W+ LLEELKL+ P+ L D+K+AI++A +P H R+KHIE+ H
Sbjct: 367 EYVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFH 546
Query: 1149 FIKEKIVSGTICLPYVTSNEQTADILTKSLARPNFERLIVKL 1190
+I++++ G + + Y + EQ AD++TK + F+++ +L
Sbjct: 547 YIRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSEL 672
>BE474381 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (20%)
Length = 406
Score = 121 bits (303), Expect(2) = 1e-40
Identities = 58/84 (69%), Positives = 72/84 (85%)
Frame = +3
Query: 1044 FTDADWAGSVIDRKSTTGYCAYVWGNLVTWRSKKQGVVARSSAEAEFRAMAQGICELLWI 1103
+TDADWAGSV DR+ST+GYC +V GNLV+ SKKQ VVARSSAEAEFRA+A GICE LW+
Sbjct: 156 YTDADWAGSVTDRRSTSGYCTFVGGNLVS*-SKKQSVVARSSAEAEFRALAHGICETLWV 332
Query: 1104 QKLLEELKLKIDLPLKLFCDSKAA 1127
+KLL+ELK+ P+KL+CD+K+A
Sbjct: 333 KKLLQELKVHSSPPIKLYCDNKSA 404
Score = 65.1 bits (157), Expect(2) = 1e-40
Identities = 29/39 (74%), Positives = 35/39 (89%)
Frame = +1
Query: 994 IAFSVSVVSQFMHSPYEEHLEAVYRILRYLKSNPGKGLY 1032
IAF+VS+VSQFMH+P EHLEA +RILRYLK +PG+GLY
Sbjct: 7 IAFAVSMVSQFMHAPGHEHLEAAFRILRYLKGSPGRGLY 123
>BI969608 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (19%)
Length = 454
Score = 161 bits (408), Expect = 1e-39
Identities = 77/131 (58%), Positives = 104/131 (78%), Gaps = 3/131 (2%)
Frame = -2
Query: 1072 TWR---SKKQGVVARSSAEAEFRAMAQGICELLWIQKLLEELKLKIDLPLKLFCDSKAAI 1128
TW +K + ARSSA+AE+RAMAQG+CE+L ++++LEEL+L + LP+KL+CD+KAAI
Sbjct: 444 TWXXGGTKNKMXXARSSAKAEYRAMAQGVCEIL*LKRILEELQLPMTLPMKLYCDNKAAI 265
Query: 1129 SIAHNPVQHDRTKHIEIDRHFIKEKIVSGTICLPYVTSNEQTADILTKSLARPNFERLIV 1188
+I+ NPVQH RTKH+EIDR FIKEK+ +G IC+P++ ++Q ADI TK L RPNFE +
Sbjct: 264 NISQNPVQHGRTKHVEIDRPFIKEKVDAGQICMPFIPFSQQVADIFTKGLFRPNFEFFVS 85
Query: 1189 KLGMTNIYAPT 1199
KL M +IYAPT
Sbjct: 84 KLDMLDIYAPT 52
Score = 32.3 bits (72), Expect = 1.3
Identities = 12/22 (54%), Positives = 15/22 (67%)
Frame = -1
Query: 1066 VWGNLVTWRSKKQGVVARSSAE 1087
VWGNL WR+KKQ VV + +
Sbjct: 454 VWGNLXXWRNKKQDVVXQEQCQ 389
>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
Length = 558
Score = 157 bits (397), Expect = 3e-38
Identities = 91/179 (50%), Positives = 119/179 (65%), Gaps = 2/179 (1%)
Frame = +1
Query: 746 TVERYKARLVAKGFTQAYGIDYSETFAPVAKLNTVRVLLSLAVNLDWPLNQLDVKNAFLN 805
T++++KARLVAK +TQ YG DY+ TF+PVAK+ V +L S+AV WPL LD KNAFL+
Sbjct: 31 TIDQFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAFLH 210
Query: 806 GDLQEEVYMDSPPGF--EDKFGLNVCKLQKSLYGLKQSPRAWFEKFTWSVKKQGYMQAQS 863
G L+EEVYM+ P GF + + VC+L +S YGLKQSPRAW F + Y ++
Sbjct: 211 GYLEEEVYMEQPLGFVAQGESSNMVCQLCRSFYGLKQSPRAW--PFLYCGAAIWYDSHEA 384
Query: 864 DHTLFMRFSNDGKIAILIVYVDDIILTGDDIVEMDRLKKNLAKEFEIKDLGALKYFLGM 922
DH++F S G I LIVYVDDI +TG D + LK L +F+ KDLG L+YFLG+
Sbjct: 385 DHSVFYCHSPQGCI-YLIVYVDDIGITGSDQHGIT*LK*XLCCQFQTKDLGKLRYFLGI 558
>TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotransposon
Hopscotch polyprotein, partial (7%)
Length = 1446
Score = 135 bits (340), Expect(2) = 3e-37
Identities = 65/109 (59%), Positives = 82/109 (74%)
Frame = +2
Query: 1046 DADWAGSVIDRKSTTGYCAYVWGNLVTWRSKKQGVVARSSAEAEFRAMAQGICELLWIQK 1105
DA+WA S IDR ST GYC + NLV W+S K VVARSSAEAE++AM CEL+WI++
Sbjct: 8 DANWAVSPIDRGSTLGYCVSIGENLVLWKSNK*NVVARSSAEAEYKAMTVATCELIWIKQ 187
Query: 1106 LLEELKLKIDLPLKLFCDSKAAISIAHNPVQHDRTKHIEIDRHFIKEKI 1154
LL+ELK +KL CD++AA+ IA NPV H+RTKHIEID HF++EK+
Sbjct: 188 LLQELKFGSTQQMKLCCDNQAALHIASNPVFHERTKHIEIDCHFVREKV 334
Score = 39.7 bits (91), Expect(2) = 3e-37
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 1153 KIVSGTICLPYVTSNEQTADILTKSLARPNFERLIVKLGMTNIYAPT 1199
K S + + +V+SN+Q A+I TKSL P + + KLG +YA T
Sbjct: 330 KSFSKEVIIEFVSSNDQLANIFTKSLRGPRIQNICSKLGAFELYAST 470
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 152 bits (384), Expect = 9e-37
Identities = 76/148 (51%), Positives = 104/148 (69%), Gaps = 2/148 (1%)
Frame = -3
Query: 705 AVLEEMRALEKNKTWKIMTLPAGKNTVGCKWVFTVKYNSDNTVERYKARLVAKGFTQAYG 764
A+ EE+ E+N WK++ P +G KWVF K + + R KARLVAKG+ Q G
Sbjct: 458 AMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEG 279
Query: 765 IDYSETFAPVAKLNTVRVLLSLAVNLDWPLNQLDVKNAFLNGDLQEEVYMDSPPGFE--D 822
IDY ET+APVA+L +R+LL+ +++ L Q+DVK+AFLNG +QEEVY++ PPGFE D
Sbjct: 278 IDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIPD 99
Query: 823 KFGLNVCKLQKSLYGLKQSPRAWFEKFT 850
K +V KLQK+LYGLKQ+PRAW+E+ +
Sbjct: 98 K-PTHVYKLQKALYGLKQAPRAWYERIS 18
>BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Arabidopsis
thaliana}, partial (18%)
Length = 421
Score = 149 bits (377), Expect = 6e-36
Identities = 75/139 (53%), Positives = 98/139 (69%)
Frame = -2
Query: 833 KSLYGLKQSPRAWFEKFTWSVKKQGYMQAQSDHTLFMRFSNDGKIAILIVYVDDIILTGD 892
KSLYGLKQ+ R W+EK T + K+GY+Q+ SD++LF + L+VYVDDIIL GD
Sbjct: 420 KSLYGLKQASRKWYEKLTNLLLKEGYIQSISDYSLFT-LTKGNTFTALLVYVDDIILAGD 244
Query: 893 DIVEMDRLKKNLAKEFEIKDLGALKYFLGMEVARSRKGIVVSQRKYILDLLEETGMSGCR 952
I E DR+K L F+IK+LG LKYFLG+EVA SR GI +SQRKY LDLL+++G+ GC+
Sbjct: 243 SIDEFDRIKNVLDLAFKIKNLGKLKYFLGLEVAHSRLGITISQRKYCLDLLKDSGLLGCK 64
Query: 953 PADTPMELNAKLWEKGNVP 971
PA TP++ + KL P
Sbjct: 63 PASTPLDTSIKLHSAAGTP 7
>BM307983
Length = 406
Score = 149 bits (377), Expect = 6e-36
Identities = 74/134 (55%), Positives = 97/134 (72%), Gaps = 2/134 (1%)
Frame = +2
Query: 731 VGCKWVFTVKYNSDNTVERYKARLVAKGFTQAYGIDYSETFAPVAK-LNTVRVLLSLAVN 789
VGC+W++TVKY +D+T++RYKARLVAKG+ Q YGIDY ETFA K + +
Sbjct: 2 VGCRWIYTVKY*ADDTLDRYKARLVAKGYIQTYGIDYEETFAQWQK*IQSGSSSP*QQAQ 181
Query: 790 LDWPLNQLDVKNAFLNGDLQEEVYMDSPPGFEDKFGLN-VCKLQKSLYGLKQSPRAWFEK 848
W ++Q DVKNAFL+G L+EEVYM+ PPG+ G N VC+L+K+LYGLKQSPRAWF +
Sbjct: 182 FGWEMHQFDVKNAFLHGSLEEEVYMEIPPGYGASNGGNKVCRLKKALYGLKQSPRAWFGR 361
Query: 849 FTWSVKKQGYMQAQ 862
FT ++ GY Q+Q
Sbjct: 362 FTQAMLSLGYKQSQ 403
>CD412284 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (13%)
Length = 539
Score = 144 bits (364), Expect = 2e-34
Identities = 65/101 (64%), Positives = 87/101 (85%)
Frame = -2
Query: 1099 ELLWIQKLLEELKLKIDLPLKLFCDSKAAISIAHNPVQHDRTKHIEIDRHFIKEKIVSGT 1158
++LW++++LEEL+L + LP+KL+CD+KAAI+I+ NPVQHDRTKH+EIDRHFIKEK+ +G
Sbjct: 502 QILWLKRILEELQLPMTLPMKLYCDNKAAINISQNPVQHDRTKHVEIDRHFIKEKVDTGL 323
Query: 1159 ICLPYVTSNEQTADILTKSLARPNFERLIVKLGMTNIYAPT 1199
IC+P+V S++Q ADILTK L R NFE L+ KL M +IYAPT
Sbjct: 322 ICMPFVPSSQQVADILTKGLFRSNFEFLVSKLVMLDIYAPT 200
>BI787454 weakly similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial
(21%)
Length = 421
Score = 142 bits (357), Expect = 1e-33
Identities = 73/138 (52%), Positives = 100/138 (71%), Gaps = 1/138 (0%)
Frame = +2
Query: 861 AQSDHTLFMRFSNDGKIAILIVYVDDIILTGDDIVEMDRLKKNLAKEFEIKDLGALKYFL 920
+++DH++F ++ GK L+VYVDDI++T D ++ +LK++L F+ KDL LKYFL
Sbjct: 8 SEADHSVFYCHTSPGKCVYLMVYVDDIMITKKDATKIVQLKEHLFNHFQTKDLRYLKYFL 187
Query: 921 GMEVARSRKGIVVSQRKYILDLLEETGMSGCRPADTPMELNAKLWE-KGNVPVDIGRYQR 979
G+EVA+S G+V+SQRKY LD+LEETGM CR D+PM+ N KL + V D RY+R
Sbjct: 188 GIEVAQSGDGVVISQRKYALDILEETGMQNCRLVDSPMDPNLKLMAYQSEVYPDPERYRR 367
Query: 980 LVGKLIYLAHTRPDIAFS 997
LVGKLIYL TRPDI+F+
Sbjct: 368 LVGKLIYLTITRPDISFA 421
>BU764568
Length = 420
Score = 109 bits (272), Expect(2) = 2e-31
Identities = 50/85 (58%), Positives = 67/85 (78%)
Frame = +3
Query: 1059 TTGYCAYVWGNLVTWRSKKQGVVARSSAEAEFRAMAQGICELLWIQKLLEELKLKIDLPL 1118
T+GYC + GNL++W+SKKQ VVA+SSAEAE+RAMA CEL+W+++LL ELK + D +
Sbjct: 165 TSGYCVLIGGNLISWKSKKQSVVAKSSAEAEYRAMALVTCELIWLKQLL*ELKFEEDTQM 344
Query: 1119 KLFCDSKAAISIAHNPVQHDRTKHI 1143
L CD++AA+ IA NP+ H RTKHI
Sbjct: 345 TLICDNQAALHIASNPIFH*RTKHI 419
Score = 46.6 bits (109), Expect(2) = 2e-31
Identities = 25/61 (40%), Positives = 35/61 (56%)
Frame = +1
Query: 1002 SQFMHSPYEEHLEAVYRILRYLKSNPGKGLYFKKTNDRDVSIFTDADWAGSVIDRKSTTG 1061
SQF++SP ++H AV IL+ KS PGKGL ++ + ++DAD GS DR
Sbjct: 1 SQFLNSPCQDHWNAVS*ILK*TKSAPGKGLIYEDKGHSQIIGYSDAD*VGSPSDRHQDIV 180
Query: 1062 Y 1062
Y
Sbjct: 181 Y 183
>BM527454 weakly similar to GP|27901709|gb| gag-pol polyprotein {Vitis
vinifera}, partial (19%)
Length = 437
Score = 79.7 bits (195), Expect(2) = 1e-30
Identities = 37/76 (48%), Positives = 56/76 (73%)
Frame = +2
Query: 868 FMRFSNDGKIAILIVYVDDIILTGDDIVEMDRLKKNLAKEFEIKDLGALKYFLGMEVARS 927
F+ + + L+VYVDDI++TG+D ++ +LK +L F+ KDLG +YFLG+EVA+S
Sbjct: 5 FLLSYSSSRCVYLMVYVDDIVITGNDQGKIAQLKGHLFSHFQTKDLGKFEYFLGIEVAQS 184
Query: 928 RKGIVVSQRKYILDLL 943
+ GI++SQRKY LD+L
Sbjct: 185 KDGIIISQRKYALDIL 232
Score = 73.6 bits (179), Expect(2) = 1e-30
Identities = 39/71 (54%), Positives = 47/71 (65%), Gaps = 1/71 (1%)
Frame = +1
Query: 943 LEETGMSGCRPADTPMELNAKLWEKGNVPV-DIGRYQRLVGKLIYLAHTRPDIAFSVSVV 1001
+ TGMS CRP D+ M+ N KL P D RY+ LVGKLIYL TRP+I+F V VV
Sbjct: 220 IRHTGMSDCRPIDSLMDPNKKLLPNQGKPYSDSERYRILVGKLIYLTITRPNISFVVGVV 399
Query: 1002 SQFMHSPYEEH 1012
SQFM SP+ +H
Sbjct: 400 SQFMQSPHNDH 432
>BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa (japonica
cultivar-group)}, partial (18%)
Length = 430
Score = 95.5 bits (236), Expect(2) = 2e-29
Identities = 45/94 (47%), Positives = 63/94 (66%)
Frame = +1
Query: 684 LSTVEIPKNVQEALKIPKWKEAVLEEMRALEKNKTWKIMTLPAGKNTVGCKWVFTVKYNS 743
L T P V++AL P W++A+ + AL +NKT + +LP+GK + CKWVF +K N
Sbjct: 16 LFTTAEPSTVKQALISPPWRQAMQADFDALMENKTLTLTSLPSGKAAIDCKWVFRIKENL 195
Query: 744 DNTVERYKARLVAKGFTQAYGIDYSETFAPVAKL 777
T+ RY++RLVAKGF +G DYSETF+PV +L
Sbjct: 196 YGTLNRYRSRLVAKGFHLKFGCDYSETFSPVIEL 297
Score = 53.9 bits (128), Expect(2) = 2e-29
Identities = 24/43 (55%), Positives = 32/43 (73%)
Frame = +3
Query: 779 TVRVLLSLAVNLDWPLNQLDVKNAFLNGDLQEEVYMDSPPGFE 821
T+R++L +A+ WPL Q+D+ NAFL+G L EEVYM PGFE
Sbjct: 300 TIRLILFIALTNHWPLQQVDINNAFLHGLLTEEVYMVQLPGFE 428
>TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, partial (16%)
Length = 662
Score = 126 bits (317), Expect = 5e-29
Identities = 70/187 (37%), Positives = 115/187 (61%), Gaps = 3/187 (1%)
Frame = +3
Query: 1015 AVYRILRYLKSNPGKGLYFKKTNDRDVSIFTDADWAGSVIDRKSTTGYCAYVWGNLVTWR 1074
A R+L+YLK P KGL F + + + F+DADWA + KS T YC ++ +L++W+
Sbjct: 18 AATRVLKYLKGCPRKGLSFSRESPIQILGFSDADWATCIDSSKSITWYCFFLGSSLISWK 197
Query: 1075 SKKQGVVAR--SSAEAEFRAMAQGICELLWIQKLLEELKLKIDLPLKLFCDSKAAISIAH 1132
+KKQ V+R SS+EA++RA+ CEL W+ LL++L + + ++CD+++A+
Sbjct: 198 AKKQNTVSRSSSSSEAKYRALTSTTCELQWLTYLLKDLHVTL-----IYCDNQSALQ*L- 359
Query: 1133 NPVQHDRTKHIEIDRHFIKEKIVSGTI-CLPYVTSNEQTADILTKSLARPNFERLIVKLG 1191
P++ +EID H ++EK G + CL V+S+ Q ADI TK+L+ F + KLG
Sbjct: 360 -PIKVIYHGQLEIDCHIVREKTQQGLMHCLLPVSSSNQLADIFTKALSPKLFSSNLSKLG 536
Query: 1192 MTNIYAP 1198
+++I+ P
Sbjct: 537 LSDIFLP 557
>BU548243
Length = 599
Score = 126 bits (317), Expect = 5e-29
Identities = 67/145 (46%), Positives = 96/145 (66%)
Frame = -1
Query: 1046 DADWAGSVIDRKSTTGYCAYVWGNLVTWRSKKQGVVARSSAEAEFRAMAQGICELLWIQK 1105
DA WA V D +ST G ++ NL++W S+KQ V A+SS EAE+R++AQ EL WIQ
Sbjct: 587 DAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELTWIQA 408
Query: 1106 LLEELKLKIDLPLKLFCDSKAAISIAHNPVQHDRTKHIEIDRHFIKEKIVSGTICLPYVT 1165
LL EL++ P+ + CD+K+A++IAHN V H RTKH+EID F+ EK++S + + ++
Sbjct: 407 LLMELQIPFTPPV-ILCDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQIFHIP 231
Query: 1166 SNEQTADILTKSLARPNFERLIVKL 1190
+ +Q A ILTK L+ F L KL
Sbjct: 230 ALDQWAGILTKPLSSARFTFLKSKL 156
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.315 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,028,251
Number of Sequences: 63676
Number of extensions: 837836
Number of successful extensions: 14834
Number of sequences better than 10.0: 575
Number of HSP's better than 10.0 without gapping: 6792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10321
length of query: 1199
length of database: 12,639,632
effective HSP length: 108
effective length of query: 1091
effective length of database: 5,762,624
effective search space: 6287022784
effective search space used: 6287022784
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Medicago: description of AC145330.14