BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145329.3 + phase: 0 /partial
(121 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC205832 similar to GB|AAM78044.1|21928031|AY125534 At3g62600/F2... 223 1e-59
TC208718 similar to PIR|T48161|T48161 heat shock protein 40-like... 82 5e-17
TC214335 similar to PIR|E86237|E86237 protein F14N23.23 [importe... 79 2e-16
TC208793 similar to PIR|T48161|T48161 heat shock protein 40-like... 79 3e-16
TC214234 weakly similar to UP|DJB1_HUMAN (P25685) DnaJ homolog s... 79 4e-16
TC205833 similar to GB|AAM78044.1|21928031|AY125534 At3g62600/F2... 77 1e-15
TC219751 similar to UP|O49457 (O49457) Heat-shock protein, parti... 75 6e-15
TC228346 weakly similar to PIR|E86237|E86237 protein F14N23.23 [... 70 2e-13
TC228345 similar to PIR|E86237|E86237 protein F14N23.23 [importe... 69 4e-13
TC204683 homologue to UP|Q9SWB5 (Q9SWB5) Seed maturation protein... 67 9e-13
TC225458 UP|Q9SWB5 (Q9SWB5) Seed maturation protein PM37, complete 67 9e-13
TC224730 similar to UP|O24074 (O24074) DnaJ-like protein MsJ1, p... 66 2e-12
TC204681 homologue to UP|Q9SWB5 (Q9SWB5) Seed maturation protein... 65 3e-12
BU544169 65 6e-12
TC214775 UP|Q9SWB5 (Q9SWB5) Seed maturation protein PM37, partia... 65 6e-12
AW309429 weakly similar to PIR|T48161|T48 heat shock protein 40-... 59 3e-10
TC214767 homologue to UP|Q9SWB5 (Q9SWB5) Seed maturation protein... 59 4e-10
TC228163 similar to UP|Q8LEU4 (Q8LEU4) DnaJ protein-like, partia... 56 2e-09
TC210895 similar to UP|Q9SP09 (Q9SP09) DnaJ-like protein, partia... 55 5e-09
TC207225 similar to UP|Q8LEU4 (Q8LEU4) DnaJ protein-like, partia... 54 1e-08
>TC205832 similar to GB|AAM78044.1|21928031|AY125534 At3g62600/F26K9_30
{Arabidopsis thaliana;} , partial (68%)
Length = 1171
Score = 223 bits (568), Expect = 1e-59
Identities = 109/121 (90%), Positives = 116/121 (95%)
Frame = +1
Query: 1 EVLFYEDGEPIIDGESGDLRFRIRTAPHELFKREGNDLHTTVTITLVQALVGFEKTIKHL 60
EVLFYEDGEPIIDGESGDLRFRIRTAPH++F+REGNDLH+TVTITLVQALVGFEKTIKHL
Sbjct: 364 EVLFYEDGEPIIDGESGDLRFRIRTAPHDVFRREGNDLHSTVTITLVQALVGFEKTIKHL 543
Query: 61 DEHLVDISSKGITNPKQVRKFKGEGMPLHTSTKKGDLYVTFEVLFPTTLSEEQKTKIKSI 120
DEHLVDIS+K IT PKQVRKFKGEGMPLH S KKGDLYVTFEVLFPT+L EEQKTKIK+I
Sbjct: 544 DEHLVDISTKEITKPKQVRKFKGEGMPLHMSNKKGDLYVTFEVLFPTSLREEQKTKIKAI 723
Query: 121 L 121
L
Sbjct: 724 L 726
>TC208718 similar to PIR|T48161|T48161 heat shock protein 40-like -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(85%)
Length = 1231
Score = 81.6 bits (200), Expect = 5e-17
Identities = 47/122 (38%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Frame = +3
Query: 1 EVLFYEDGEPIIDGESGDLRFRIRTAPHELFKREGNDLHTTVTITLVQALVGFEKTIKHL 60
++ F E G DL F I PH +FKR+GNDL T I+LV+AL + + L
Sbjct: 675 KITFPEKGNEQRGVIPSDLVFIIDEKPHGVFKRDGNDLVVTQKISLVEALTSYTGQLTTL 854
Query: 61 DEHLVDISSKGITNPKQVRKFKGEGMPL-HTSTKKGDLYVTFEVLFPTTLSEEQKTKIKS 119
D + +S+ + +P KGEGMP+ +KKG+L + F + FP+ L+ EQKT IK
Sbjct: 855 DGRNLTVSTNSVISPIYEEVIKGEGMPIPKEPSKKGNLRIKFNIKFPSRLTSEQKTGIKR 1034
Query: 120 IL 121
+L
Sbjct: 1035LL 1040
>TC214335 similar to PIR|E86237|E86237 protein F14N23.23 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(63%)
Length = 1124
Score = 79.3 bits (194), Expect = 2e-16
Identities = 45/105 (42%), Positives = 61/105 (57%), Gaps = 1/105 (0%)
Frame = +1
Query: 18 DLRFRIRTAPHELFKREGNDLHTTVTITLVQALVGFEKTIKHLDEHLVDISSKGITNPKQ 77
DL F + PH LFKR+GNDL T I LV+ALVG + LD + I + PK
Sbjct: 586 DLIFVVDEKPHALFKRDGNDLVVTQKILLVEALVGKTLNLTTLDGRELTIQVTEVVKPKY 765
Query: 78 VRKFKGEGMPLHTST-KKGDLYVTFEVLFPTTLSEEQKTKIKSIL 121
V EGMP+ KKG+L + F+V+FP+ L+ +QK ++K IL
Sbjct: 766 VLVVPNEGMPISKEPGKKGNLRIKFDVMFPSRLTSQQKYELKRIL 900
>TC208793 similar to PIR|T48161|T48161 heat shock protein 40-like -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(47%)
Length = 774
Score = 79.0 bits (193), Expect = 3e-16
Identities = 47/122 (38%), Positives = 65/122 (52%), Gaps = 1/122 (0%)
Frame = +2
Query: 1 EVLFYEDGEPIIDGESGDLRFRIRTAPHELFKREGNDLHTTVTITLVQALVGFEKTIKHL 60
++ F E G DL F I PH LFKR+GNDL T I+LV+AL G+ + L
Sbjct: 113 KITFPEKGNEQRGVIPSDLVFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTL 292
Query: 61 DEHLVDISSKGITNPKQVRKFKGEGMPL-HTSTKKGDLYVTFEVLFPTTLSEEQKTKIKS 119
D + +P KGEGMP+ +KKG+L + F + FP+ L+ EQK+ IK
Sbjct: 293 DGRNLTFPINSTISPTYEEVVKGEGMPIPKEPSKKGNLRIKFNIKFPSRLTSEQKSGIKR 472
Query: 120 IL 121
+L
Sbjct: 473 LL 478
>TC214234 weakly similar to UP|DJB1_HUMAN (P25685) DnaJ homolog subfamily B
member 1 (Heat shock 40 kDa protein 1) (Heat shock
protein 40) (HSP40) (DnaJ protein homolog 1) (HDJ-1),
partial (21%)
Length = 705
Score = 78.6 bits (192), Expect = 4e-16
Identities = 45/105 (42%), Positives = 60/105 (56%), Gaps = 1/105 (0%)
Frame = +2
Query: 18 DLRFRIRTAPHELFKREGNDLHTTVTITLVQALVGFEKTIKHLDEHLVDISSKGITNPKQ 77
DL F + PH FKR+GNDL T I LV+ALVG + LD + I + PK
Sbjct: 209 DLIFVVDEKPHAFFKRDGNDLVVTQKILLVEALVGKTLNLTTLDGRELTIQVTEVVKPKY 388
Query: 78 VRKFKGEGMPLHTST-KKGDLYVTFEVLFPTTLSEEQKTKIKSIL 121
V EGMP+ KKG+L + F+VLFP+ L+ +QK ++K IL
Sbjct: 389 VLVVPNEGMPISKEPGKKGNLRIKFDVLFPSRLTSQQKYELKRIL 523
>TC205833 similar to GB|AAM78044.1|21928031|AY125534 At3g62600/F26K9_30
{Arabidopsis thaliana;} , partial (55%)
Length = 866
Score = 77.0 bits (188), Expect = 1e-15
Identities = 34/37 (91%), Positives = 37/37 (99%)
Frame = +3
Query: 1 EVLFYEDGEPIIDGESGDLRFRIRTAPHELFKREGND 37
EVLFYEDGEPIIDGESGDLRFRIRTAPH++F+REGND
Sbjct: 756 EVLFYEDGEPIIDGESGDLRFRIRTAPHDVFRREGND 866
>TC219751 similar to UP|O49457 (O49457) Heat-shock protein, partial (49%)
Length = 643
Score = 74.7 bits (182), Expect = 6e-15
Identities = 45/122 (36%), Positives = 64/122 (51%), Gaps = 1/122 (0%)
Frame = +1
Query: 1 EVLFYEDGEPIIDGESGDLRFRIRTAPHELFKREGNDLHTTVTITLVQALVGFEKTIKHL 60
++ F E G + DL F I PH +F R+GNDL T I+L +AL G+ + L
Sbjct: 160 KITFPEKGNEQPNVMPADLVFIIDEKPHGVFTRDGNDLVVTQKISLAEALTGYTVHLTTL 339
Query: 61 DEHLVDISSKGITNPKQVRKFKGEGMPL-HTSTKKGDLYVTFEVLFPTTLSEEQKTKIKS 119
D + I + +P EGMPL +KKG+L + F + FPT L+EEQK I+
Sbjct: 340 DGRNLTIPINNVIHPTYEEVVPREGMPLPKDPSKKGNLRIKFNIKFPTRLTEEQKAGIRK 519
Query: 120 IL 121
+L
Sbjct: 520 LL 525
>TC228346 weakly similar to PIR|E86237|E86237 protein F14N23.23 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(30%)
Length = 557
Score = 69.7 bits (169), Expect = 2e-13
Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Frame = +2
Query: 18 DLRFRIRTAPHELFKREGNDLHTTVTITLVQALVGFEKTIKHLDEHLVDISSKGITNPKQ 77
DL F + +PH +FKR+GNDL I LV AL+G + LD + I I P
Sbjct: 5 DLIFVLDESPHAIFKRDGNDLVAIQKILLVDALIGKTLNLATLDGRDLTIQMADIVKPGY 184
Query: 78 VRKFKGEGMPLHTST-KKGDLYVTFEVLFPTTLSEEQKTKIKSIL 121
EGMP+ KKG+L + F+V+FP+ L+ +QK ++ IL
Sbjct: 185 ELVIPNEGMPISKEPGKKGNLRIMFDVIFPSRLTTQQKCDLRRIL 319
>TC228345 similar to PIR|E86237|E86237 protein F14N23.23 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(62%)
Length = 1100
Score = 68.6 bits (166), Expect = 4e-13
Identities = 41/105 (39%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Frame = +1
Query: 18 DLRFRIRTAPHELFKREGNDLHTTVTITLVQALVGFEKTIKHLDEHLVDISSKGITNPKQ 77
DL F + PH +FKR+GNDL I LV AL G + LD + I I P
Sbjct: 679 DLIFELDEKPHAIFKRDGNDLVVMHKILLVDALTGKTLNLTTLDGRDLTIKVADIVKPGY 858
Query: 78 VRKFKGEGMPLHTST-KKGDLYVTFEVLFPTTLSEEQKTKIKSIL 121
EGMP+ KKG+L + F+V+FP+ L+ +QK +K IL
Sbjct: 859 ELVVPNEGMPISKEPGKKGNLRIMFDVMFPSRLTTQQKYDLKRIL 993
>TC204683 homologue to UP|Q9SWB5 (Q9SWB5) Seed maturation protein PM37,
partial (60%)
Length = 1229
Score = 67.4 bits (163), Expect = 9e-13
Identities = 39/112 (34%), Positives = 60/112 (52%), Gaps = 3/112 (2%)
Frame = +3
Query: 13 DGESGDLRFRIRTAPHELFKREGNDLHTTVTITLVQALVGFEKTIKHLDEHLVDISSK-- 70
D +GD+ F ++ H FKR+ +DL T++L +AL GF+ + HLD + I S
Sbjct: 318 DTVTGDIVFVLQQKEHPKFKRKADDLFVEHTLSLTEALCGFQFVLTHLDSRQLLIKSNPG 497
Query: 71 GITNPKQVRKFKGEGMP-LHTSTKKGDLYVTFEVLFPTTLSEEQKTKIKSIL 121
+ P+ + EGMP KG LY+ F V FP TLS +Q ++++L
Sbjct: 498 EVVKPESFKAINDEGMPNYQRHFLKGKLYIHFSVEFPDTLSLDQVKALEAVL 653
>TC225458 UP|Q9SWB5 (Q9SWB5) Seed maturation protein PM37, complete
Length = 1797
Score = 67.4 bits (163), Expect = 9e-13
Identities = 38/124 (30%), Positives = 65/124 (51%), Gaps = 3/124 (2%)
Frame = +2
Query: 1 EVLFYEDGEPIIDGESGDLRFRIRTAPHELFKREGNDLHTTVTITLVQALVGFEKTIKHL 60
++ F + + D +GD+ F ++ H FKR+ DL T++L +AL GF+ + HL
Sbjct: 818 KITFPGEADEAPDTITGDIVFVLQQKEHPKFKRKAEDLFVEHTLSLTEALCGFQFVLTHL 997
Query: 61 DEHLVDISSK--GITNPKQVRKFKGEGMPLHTST-KKGDLYVTFEVLFPTTLSEEQKTKI 117
D + I S + P + EGMP++ KG LY+ F V FP +L+ +Q +
Sbjct: 998 DSRQLLIKSNPGEVVKPDSYKAINDEGMPMYQRPFMKGKLYIHFTVEFPDSLNPDQVKAL 1177
Query: 118 KSIL 121
+++L
Sbjct: 1178EAVL 1189
>TC224730 similar to UP|O24074 (O24074) DnaJ-like protein MsJ1, partial (96%)
Length = 1913
Score = 66.2 bits (160), Expect = 2e-12
Identities = 40/126 (31%), Positives = 67/126 (52%), Gaps = 5/126 (3%)
Frame = +1
Query: 1 EVLFYEDGEPIIDGESGDLRFRIRTAPHELFKREGNDLHTTVTITLVQALVGFEKTIKHL 60
+++F + D +GD+ F ++ H F+RE +DL+ ++L +AL GF+ +KHL
Sbjct: 1063 KIVFEGQADEAPDTITGDIVFVLQVKDHPKFRREQDDLYIDHNLSLTEALCGFQFAVKHL 1242
Query: 61 D--EHLVDISSKGITNPKQVRKFKGEGMPLHTST-KKGDLYVTFEVLFPTT--LSEEQKT 115
D + L+ + + P Q + EGMP H KG LY+ F V FP + LS +Q
Sbjct: 1243 DGRQLLIKSNPGEVIKPGQYKAINDEGMPQHNRPFMKGRLYIQFNVDFPDSGFLSPDQCQ 1422
Query: 116 KIKSIL 121
++ +L
Sbjct: 1423 LLEKVL 1440
>TC204681 homologue to UP|Q9SWB5 (Q9SWB5) Seed maturation protein PM37,
complete
Length = 1542
Score = 65.5 bits (158), Expect = 3e-12
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Frame = +3
Query: 1 EVLFYEDGEPIIDGESGDLRFRIRTAPHELFKREGNDLHTTVTITLVQALVGFEKTIKHL 60
++ F + + D +GD+ F ++ H FKR+ +DL T++L +AL GF+ + HL
Sbjct: 813 KITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKADDLFVEHTLSLTEALCGFQFVLAHL 992
Query: 61 D--EHLVDISSKGITNPKQVRKFKGEGMP-LHTSTKKGDLYVTFEVLFPTTLSEEQKTKI 117
D + L+ + + P + EGMP KG LY+ F V FP TLS +Q +
Sbjct: 993 DGRQLLIKSNPGEVVKPDSYKAINDEGMPNYQRHFLKGKLYIHFSVEFPDTLSLDQVKAL 1172
Query: 118 KSIL 121
++ L
Sbjct: 1173ETTL 1184
>BU544169
Length = 529
Score = 64.7 bits (156), Expect = 6e-12
Identities = 38/122 (31%), Positives = 61/122 (49%), Gaps = 1/122 (0%)
Frame = -2
Query: 1 EVLFYEDGEPIIDGESGDLRFRIRTAPHELFKREGNDLHTTVTITLVQALVGFEKTIKHL 60
++ F E G + + DL F I PH +F R+GNDL T ++L +AL G + L
Sbjct: 477 KITFPEKGNEQPNVIASDLVFVIDEKPHPVFTRDGNDLVVTQKVSLEEALTGHXXXLTTL 298
Query: 61 DEHLVDISSKGITNPKQVRKFKGEGMPL-HTSTKKGDLYVTFEVLFPTTLSEEQKTKIKS 119
+ ++ I + +P EGMP+ +K+G + F + FP L+ EQ+ IK
Sbjct: 297 NGRVLKIPINNVIHPTYEEVVPREGMPIPKDPSKRGXXRIKFNIKFPAKLTSEQQAGIKK 118
Query: 120 IL 121
+L
Sbjct: 117 LL 112
>TC214775 UP|Q9SWB5 (Q9SWB5) Seed maturation protein PM37, partial (42%)
Length = 530
Score = 64.7 bits (156), Expect = 6e-12
Identities = 37/124 (29%), Positives = 64/124 (50%), Gaps = 3/124 (2%)
Frame = +3
Query: 1 EVLFYEDGEPIIDGESGDLRFRIRTAPHELFKREGNDLHTTVTITLVQALVGFEKTIKHL 60
++ F + + D +GD+ F ++ H FKR+ DL T++L +AL GF+ + HL
Sbjct: 147 KITFPGEADEAPDTITGDIVFVLQQKEHPKFKRKAEDLFVEHTLSLTEALCGFQFVLTHL 326
Query: 61 DEHLVDISSK--GITNPKQVRKFKGEGMPLHTST-KKGDLYVTFEVLFPTTLSEEQKTKI 117
D + I S + P + EGMP++ KG LY+ F V P +L+ +Q +
Sbjct: 327 DSRQLLIKSNPGEVVKPDSYKAINDEGMPMYQRPFMKGKLYIHFTVEXPDSLNPDQVKAL 506
Query: 118 KSIL 121
+++L
Sbjct: 507 EAVL 518
>AW309429 weakly similar to PIR|T48161|T48 heat shock protein 40-like -
Arabidopsis thaliana, partial (42%)
Length = 472
Score = 58.9 bits (141), Expect = 3e-10
Identities = 38/101 (37%), Positives = 53/101 (51%), Gaps = 1/101 (0%)
Frame = -1
Query: 18 DLRFRIRTAPHELFKREGNDLHTTVTITLVQALVGFEKTIKHLDEHLVDISSKGITNPKQ 77
D F I H +FKR+GNDL T I LV+ L+G+ + LD + +S I +
Sbjct: 304 DFVFIIDETLHGVFKRDGNDLVITQNIFLVEVLIGYIV*LMILDGRNLIVSINSIISLTY 125
Query: 78 VRKFKGEGMPLHTS-TKKGDLYVTFEVLFPTTLSEEQKTKI 117
KGEGM + +KKG+L + F + FP+ L E KT I
Sbjct: 124 EEVIKGEGMSISKELSKKGNLRIKFNIKFPSRLISE*KTGI 2
>TC214767 homologue to UP|Q9SWB5 (Q9SWB5) Seed maturation protein PM37,
partial (39%)
Length = 713
Score = 58.5 bits (140), Expect = 4e-10
Identities = 32/97 (32%), Positives = 53/97 (53%), Gaps = 3/97 (3%)
Frame = +2
Query: 28 HELFKREGNDLHTTVTITLVQALVGFEKTIKHLD--EHLVDISSKGITNPKQVRKFKGEG 85
H FKR+ DL ++L +AL GF+ + HLD + L+ + + P + EG
Sbjct: 20 HPKFKRKAEDLFVEHILSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDSYKAINDEG 199
Query: 86 MPLH-TSTKKGDLYVTFEVLFPTTLSEEQKTKIKSIL 121
MP++ S KG LY+ F V FP +L+ +Q ++++L
Sbjct: 200 MPMYQRSFMKGKLYIHFTVEFPDSLNPDQVKALEAVL 310
>TC228163 similar to UP|Q8LEU4 (Q8LEU4) DnaJ protein-like, partial (65%)
Length = 1660
Score = 56.2 bits (134), Expect = 2e-09
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Frame = +2
Query: 5 YEDGEPIIDGES-GDLRFRIRTAPHELFKREGNDLHTTVTITLVQALVGFEKTIKHLDEH 63
Y G DG+ GDL I+ +F+REG+D+H +++ QA++G + L
Sbjct: 1061 YRSGGADPDGDQPGDLYVTIKVREDPVFRREGSDIHVDAVLSITQAILGGTIQVPTLTGD 1240
Query: 64 LVDISSKGITNPKQVRKFKGEGMPLHTSTKKGDLYVTFEVLFPTTLSEEQKTKIK 118
+V + + T P Q K +G+ S GD YV F V PT L++ Q+ I+
Sbjct: 1241 VV-LKVRPGTQPGQKVVLKKKGVKTKNSCTFGDQYVHFNVNIPTNLTQRQRELIE 1402
>TC210895 similar to UP|Q9SP09 (Q9SP09) DnaJ-like protein, partial (49%)
Length = 756
Score = 55.1 bits (131), Expect = 5e-09
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Frame = +1
Query: 1 EVLFYEDGEPIIDGESGDLRFRIRTAPHELFKREGNDLHTTVTITL--VQALVGFEKTIK 58
++ F E G + + DL F I PH +F R+G DL T I+L +AL G+ +
Sbjct: 250 KITFPEKGNEQPNVIAADLVFIIDEKPHSVFTRDGYDLVVTQKISLKEAEALTGYTIQLT 429
Query: 59 HLDEHLVDISSKGITNPKQVRKFKGEGMPLHTS-TKKGDLYVTFEVLFP 106
LD ++I +T+P GEGMP+ +KKG+L + F + P
Sbjct: 430 TLDGRGLNIIINNVTDPDYEEVVTGEGMPISKDPSKKGNLRIKFNIEIP 576
>TC207225 similar to UP|Q8LEU4 (Q8LEU4) DnaJ protein-like, partial (45%)
Length = 1107
Score = 53.9 bits (128), Expect = 1e-08
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Frame = +1
Query: 5 YEDGEPIIDGES-GDLRFRIRTAPHELFKREGNDLHTTVTITLVQALVGFEKTIKHLDEH 63
Y G DG++ GDL I+ +F+REG+++H +++ QA++G + L
Sbjct: 277 YRSGGADPDGDNPGDLYVTIKVREDPVFRREGSNIHVDAVLSITQAILGGTIQVPTLTGD 456
Query: 64 LVDISSKGITNPKQVRKFKGEGMPLHTSTKKGDLYVTFEVLFPTTLSEEQKTKIK 118
+V + + T P Q K +G+ S GD YV F V P L+E Q+ I+
Sbjct: 457 VV-LKIRPGTQPGQKVVLKKKGIKTKNSYTFGDQYVHFNVSIPNNLTERQRELIE 618
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.138 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,324,287
Number of Sequences: 63676
Number of extensions: 47502
Number of successful extensions: 238
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of query: 121
length of database: 12,639,632
effective HSP length: 97
effective length of query: 24
effective length of database: 6,463,060
effective search space: 155113440
effective search space used: 155113440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)
Medicago: description of AC145329.3